jgi.p|Nanoce1779_2|598100, mRNA_7281 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598100
Unique NamemRNA_7281
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length719
Alignment locationscaffold_19:118981..119699 +

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Properties
Property NameValue
TranscriptId598186
TrackFilteredModels2
ProteinId598100
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:118981..119699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598100gene_7281Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598100mRNA_7281-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7281CDS_7281Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7281 ID=mRNA_7281|Name=jgi.p|Nanoce1779_2|598100|organism=Nannochloropsis oceanica|type=mRNA|length=719bp
GTAGGCGCGCGCCACACGCGTACCACCAAGCAAGGCGGGAGGGGAAATAT
TTTTTTAATATATATTTTAAGCAACAGCAGGAGTAAAAAAGCAGTGGCCT
GATGCACCAGAGTATGTTGTGATGACTCTTTTTTCTCTTTCCATCTTCAG
CCACCATTTTCTGTCGCCTGACCATCTCCTTTATCGGCTTGGTCGTCCTC
GCCCCTCGCGTCAAAAACGAGCGAGAATGAATGACACGCGCTAGGGAGGA
GCGGTAATGGAGGTTGCCTGTTTCCTCCTGCTCCTTAAGCTGTCGCTGCT
GCTGCTGTCCCTGCTGCTGCAATTGCTGCTGCCACTGATGTTATTTACAT
ACAAGACTCACATAATCATCCCCAAGTTAATACCGAGCCTGTGTTGCTCT
CGTGTCCTCTCTACTTCTTCATTGTTTAGCTTGTCCGTAACCATCTTCTT
CCTCTTCATCTCTCTCTGTGTCTCTCATCTATCTCTCTCTTTGTCGTTCT
CTCTTTGCCTTTGCTCTAAAATATTTACGTGCTCCTCCCTCTCCCTGCTA
GCCCTCACTGAATTAGCTCCCTCACTCATCCAACCACGCTGACAAGCTTC
TCCACTACGAGAGGAAAGAGTAAAAGCGTGCGTTGCCTTCACATGGACCA
CGCGATGCTGTTCCATCCTATTCCCTTTCCCTCCCTCTTTCCCTCCCGCC
CTCCCTCCCTCCCAACACC
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protein sequence of jgi.p|Nanoce1779_2|598100

>mRNA_7281-protein ID=mRNA_7281-protein|Name=jgi.p|Nanoce1779_2|598100|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MEVACFLLLLKLSLLLLSLLLQLLLPLMLFTYKTHIIIPKLIPSLCCSRV
LSTSSLFSLSVTIFFLFISLCVSHLSLSLSFSLCLCSKIFTCSSLSLLAL
TELAPSLIQPR*
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mRNA from alignment at scaffold_19:118981..119699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7281 ID=mRNA_7281|Name=jgi.p|Nanoce1779_2|598100|organism=Nannochloropsis oceanica|type=mRNA|length=719bp|location=Sequence derived from alignment at scaffold_19:118981..119699+ (Nannochloropsis oceanica)
GTAGGCGCGCGCCACACGCGTACCACCAAGCAAGGCGGGAGGGGAAATAT
TTTTTTAATATATATTTTAAGCAACAGCAGGAGTAAAAAAGCAGTGGCCT
GATGCACCAGAGTATGTTGTGATGACTCTTTTTTCTCTTTCCATCTTCAG
CCACCATTTTCTGTCGCCTGACCATCTCCTTTATCGGCTTGGTCGTCCTC
GCCCCTCGCGTCAAAAACGAGCGAGAATGAATGACACGCGCTAGGGAGGA
GCGGTAATGGAGGTTGCCTGTTTCCTCCTGCTCCTTAAGCTGTCGCTGCT
GCTGCTGTCCCTGCTGCTGCAATTGCTGCTGCCACTGATGTTATTTACAT
ACAAGACTCACATAATCATCCCCAAGTTAATACCGAGCCTGTGTTGCTCT
CGTGTCCTCTCTACTTCTTCATTGTTTAGCTTGTCCGTAACCATCTTCTT
CCTCTTCATCTCTCTCTGTGTCTCTCATCTATCTCTCTCTTTGTCGTTCT
CTCTTTGCCTTTGCTCTAAAATATTTACGTGCTCCTCCCTCTCCCTGCTA
GCCCTCACTGAATTAGCTCCCTCACTCATCCAACCACGCTGACAAGCTTC
TCCACTACGAGAGGAAAGAGTAAAAGCGTGCGTTGCCTTCACATGGACCA
CGCGATGCTGTTCCATCCTATTCCCTTTCCCTCCCTCTTTCCCTCCCGCC
CTCCCTCCCTCCCAACACC
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Coding sequence (CDS) from alignment at scaffold_19:118981..119699+

>mRNA_7281 ID=mRNA_7281|Name=jgi.p|Nanoce1779_2|598100|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_19:118981..119699+ (Nannochloropsis oceanica)
ATGGAGGTTGCCTGTTTCCTCCTGCTCCTTAAGCTGTCGCTGCTGCTGCT
GTCCCTGCTGCTGCAATTGCTGCTGCCACTGATGTTATTTACATACAAGA
CTCACATAATCATCCCCAAGTTAATACCGAGCCTGTGTTGCTCTCGTGTC
CTCTCTACTTCTTCATTGTTTAGCTTGTCCGTAACCATCTTCTTCCTCTT
CATCTCTCTCTGTGTCTCTCATCTATCTCTCTCTTTGTCGTTCTCTCTTT
GCCTTTGCTCTAAAATATTTACGTGCTCCTCCCTCTCCCTGCTAGCCCTC
ACTGAATTAGCTCCCTCACTCATCCAACCACGCTGA
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Synonyms
Publications