jgi.p|Nanoce1779_2|507408, mRNA_7279 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|507408
Unique NamemRNA_7279
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length300
Alignment locationscaffold_19:117228..117527 -

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Properties
Property NameValue
TranscriptId507494
TrackFilteredModels2
ProteinId507408
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:117228..117527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|507408gene_7279Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7279CDS_7279Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|507408mRNA_7279-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7279 ID=mRNA_7279|Name=jgi.p|Nanoce1779_2|507408|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
TCCATCTCTTGTCCTTTCGCCGGGCTCTTGACCAGCATCCCTGTTATCTC
GAACGATGCGCCCACACCCCCACAGTTCGCAGGAGTAGCAAACTCGAACC
CCTCCGTCTTCTCCACCTCCAATACCGCCTGCATCGACATGGCCGTCGAG
CCATCATTCAACTCGATAAAGAGCAAGGCTCCCTTGTTGGCTTCGCGGAT
CGTGCGCGCCCACCCCTTGATTGTCACGATCTTTCCTACTGCTACCCCCC
CCCCAACCTCCACCAGAATCTCTTTGATGACAGTTCGACCACGCCGGAAT
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protein sequence of jgi.p|Nanoce1779_2|507408

>mRNA_7279-protein ID=mRNA_7279-protein|Name=jgi.p|Nanoce1779_2|507408|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
SISCPFAGLLTSIPVISNDAPTPPQFAGVANSNPSVFSTSNTACIDMAVE
PSFNSIKSKAPLLASRIVRAHPLIVTIFPTATPPPTSTRISLMTVRPRRN
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mRNA from alignment at scaffold_19:117228..117527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7279 ID=mRNA_7279|Name=jgi.p|Nanoce1779_2|507408|organism=Nannochloropsis oceanica|type=mRNA|length=300bp|location=Sequence derived from alignment at scaffold_19:117228..117527- (Nannochloropsis oceanica)
TCCATCTCTTGTCCTTTCGCCGGGCTCTTGACCAGCATCCCTGTTATCTC
GAACGATGCGCCCACACCCCCACAGTTCGCAGGAGTAGCAAACTCGAACC
CCTCCGTCTTCTCCACCTCCAATACCGCCTGCATCGACATGGCCGTCGAG
CCATCATTCAACTCGATAAAGAGCAAGGCTCCCTTGTTGGCTTCGCGGAT
CGTGCGCGCCCACCCCTTGATTGTCACGATCTTTCCTACTGCTACCCCCC
CCCCAACCTCCACCAGAATCTCTTTGATGACAGTTCGACCACGCCGGAAT
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Coding sequence (CDS) from alignment at scaffold_19:117228..117527-

>mRNA_7279 ID=mRNA_7279|Name=jgi.p|Nanoce1779_2|507408|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_19:117228..117527- (Nannochloropsis oceanica)
TCCATCTCTTGTCCTTTCGCCGGGCTCTTGACCAGCATCCCTGTTATCTC
GAACGATGCGCCCACACCCCCACAGTTCGCAGGAGTAGCAAACTCGAACC
CCTCCGTCTTCTCCACCTCCAATACCGCCTGCATCGACATGGCCGTCGAG
CCATCATTCAACTCGATAAAGAGCAAGGCTCCCTTGTTGGCTTCGCGGAT
CGTGCGCGCCCACCCCTTGATTGTCACGATCTTTCCTACTGCTACCCCCC
CCCCAACCTCCACCAGAATCTCTTTGATGACAGTTCGACCACGCCGGAAT
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Synonyms
Publications