jgi.p|Nanoce1779_2|531313, mRNA_7278 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|531313
Unique NamemRNA_7278
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length669
Alignment locationscaffold_19:116344..117012 +

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Properties
Property NameValue
TranscriptId531399
TrackFilteredModels2
ProteinId531313
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:116344..117012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531313gene_7278Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531313mRNA_7278-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7278CDS_7278Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7278 ID=mRNA_7278|Name=jgi.p|Nanoce1779_2|531313|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ATGTCGGCCTCTACCTTCCGCCTCCGCGCGCCCGGGGAGAGCTACCAGAC
GCGCAAGGTCGCTTTGGCCGCCGCTTTGGCAGGCGTCGAACTCACAACAA
GCCTTCAAGAAGACCCCGCAGCCCTTGCCCAACTGGTCCCGCATGGCAAG
TCTTTGATTCTTGAAGTGCGATCTACATCATCATCACCATTGTTTCTTGC
CCGGAGCAATGCAGCCTTGCGTTTCCTGGCGGAGAATGCACCGGCCGCGG
GCTTGTACGGCGAGACCCTGTATGAAGCTGGCCTAGTGGATCAATGGCTG
GACTTCTCGTTCAATAGTCTTGAGGTCCCTGCGACGGTGCTGCGCTTACC
TACGGCGGCCCAGGGATCTGTGTCGGATGCCGTGAAGGAGACGGCCCGAC
GGGAAATTTTGGGGGCAGTGGGTGTGCTTGACAAGGCGTTGGGAACAGCG
ACGTTTTTGGCCGGGGATAAGTTGAGCTTGGCGGACGTGGCCATATTTTG
TTCCTTACACGATTTGCTGGTCAGAGGAAACGAGGGCGGGGTACCTACAG
TTGTTGTTGATCGTTTTCCCGGGGTGTGGCGCTGGTTTTTGACCTTGTTA
CACCAGCCATTGTTTCAGAAGGTGGCCGCGCCTAATGCGGCTGCTACAAT
CAAGGCCTTCGAGGCGAGG
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protein sequence of jgi.p|Nanoce1779_2|531313

>mRNA_7278-protein ID=mRNA_7278-protein|Name=jgi.p|Nanoce1779_2|531313|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MSASTFRLRAPGESYQTRKVALAAALAGVELTTSLQEDPAALAQLVPHGK
SLILEVRSTSSSPLFLARSNAALRFLAENAPAAGLYGETLYEAGLVDQWL
DFSFNSLEVPATVLRLPTAAQGSVSDAVKETARREILGAVGVLDKALGTA
TFLAGDKLSLADVAIFCSLHDLLVRGNEGGVPTVVVDRFPGVWRWFLTLL
HQPLFQKVAAPNAAATIKAFEAR
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mRNA from alignment at scaffold_19:116344..117012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7278 ID=mRNA_7278|Name=jgi.p|Nanoce1779_2|531313|organism=Nannochloropsis oceanica|type=mRNA|length=669bp|location=Sequence derived from alignment at scaffold_19:116344..117012+ (Nannochloropsis oceanica)
ATGTCGGCCTCTACCTTCCGCCTCCGCGCGCCCGGGGAGAGCTACCAGAC
GCGCAAGGTCGCTTTGGCCGCCGCTTTGGCAGGCGTCGAACTCACAACAA
GCCTTCAAGAAGACCCCGCAGCCCTTGCCCAACTGGTCCCGCATGGCAAG
TCTTTGATTCTTGAAGTGCGATCTACATCATCATCACCATTGTTTCTTGC
CCGGAGCAATGCAGCCTTGCGTTTCCTGGCGGAGAATGCACCGGCCGCGG
GCTTGTACGGCGAGACCCTGTATGAAGCTGGCCTAGTGGATCAATGGCTG
GACTTCTCGTTCAATAGTCTTGAGGTCCCTGCGACGGTGCTGCGCTTACC
TACGGCGGCCCAGGGATCTGTGTCGGATGCCGTGAAGGAGACGGCCCGAC
GGGAAATTTTGGGGGCAGTGGGTGTGCTTGACAAGGCGTTGGGAACAGCG
ACGTTTTTGGCCGGGGATAAGTTGAGCTTGGCGGACGTGGCCATATTTTG
TTCCTTACACGATTTGCTGGTCAGAGGAAACGAGGGCGGGGTACCTACAG
TTGTTGTTGATCGTTTTCCCGGGGTGTGGCGCTGGTTTTTGACCTTGTTA
CACCAGCCATTGTTTCAGAAGGTGGCCGCGCCTAATGCGGCTGCTACAAT
CAAGGCCTTCGAGGCGAGG
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Coding sequence (CDS) from alignment at scaffold_19:116344..117012+

>mRNA_7278 ID=mRNA_7278|Name=jgi.p|Nanoce1779_2|531313|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at scaffold_19:116344..117012+ (Nannochloropsis oceanica)
ATGTCGGCCTCTACCTTCCGCCTCCGCGCGCCCGGGGAGAGCTACCAGAC
GCGCAAGGTCGCTTTGGCCGCCGCTTTGGCAGGCGTCGAACTCACAACAA
GCCTTCAAGAAGACCCCGCAGCCCTTGCCCAACTGGTCCCGCATGGCAAG
TCTTTGATTCTTGAAGTGCGATCTACATCATCATCACCATTGTTTCTTGC
CCGGAGCAATGCAGCCTTGCGTTTCCTGGCGGAGAATGCACCGGCCGCGG
GCTTGTACGGCGAGACCCTGTATGAAGCTGGCCTAGTGGATCAATGGCTG
GACTTCTCGTTCAATAGTCTTGAGGTCCCTGCGACGGTGCTGCGCTTACC
TACGGCGGCCCAGGGATCTGTGTCGGATGCCGTGAAGGAGACGGCCCGAC
GGGAAATTTTGGGGGCAGTGGGTGTGCTTGACAAGGCGTTGGGAACAGCG
ACGTTTTTGGCCGGGGATAAGTTGAGCTTGGCGGACGTGGCCATATTTTG
TTCCTTACACGATTTGCTGGTCAGAGGAAACGAGGGCGGGGTACCTACAG
TTGTTGTTGATCGTTTTCCCGGGGTGTGGCGCTGGTTTTTGACCTTGTTA
CACCAGCCATTGTTTCAGAAGGTGGCCGCGCCTAATGCGGCTGCTACAAT
CAAGGCCTTCGAGGCGAGG
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Synonyms
Publications