jgi.p|Nanoce1779_2|652075, mRNA_7277 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|652075
Unique Name	mRNA_7277
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1809
Alignment location	scaffold_19:112122..114450 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	652161
Track	FilteredModels2
ProteinId	652075

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:112122..114450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652075	gene_7277	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|652075	mRNA_7277-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7277	CDS_7277	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:112122..114450+
coding sequence from alignment at scaffold_19:112122..114450+

mRNA sequence

>mRNA_7277 ID=mRNA_7277|Name=jgi.p|Nanoce1779_2|652075|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp
ATGGAAGATAGTGAAGACGAGGAGGATATTGTTGTGCGGTTTTTCACGGA
TATTGGGGACGATAACGATGATGAGGAAGAGGAGGAGCAGGAAAAACCAA
GCGGCCCTCGGGCTTATTTCCAAGACCTCGGCTTAATGGCCGAGGCTGCG
GCTGACATGCCCGTGGACTTCCTCACAGATCCCGAAAAGGCGTATTACTA
CTTGGGACGGGAAGAAGGGGGAGGGAGGGAGGGAGGCATGAAGACCTGCA
GACTCATCACGGGGACGTGGCAATTGGACGGGCGGCACGGTTACCACCCG
TTTTTCGTGGATGTCAAGGAAACGGTCAGGGATATGGTGAGGAGGGATGG
GTATACGACGTTCGACGTGGCTCCTTTCTATGGGCAGGTGGAACGGTGGT
TGGGGGAGGTGAGGACGAAGATCGAGGACCCCATGGAGCTGGAAGCGTAC
AAGATTTTCACCAAACTATCCTTCCCACCCGACCAAGCCGACTATCGCCT
TTGCGACGTGGAGGCCGCTGTGGACGCCGCCTTGTTCCGTCTTCGCGCGC
CGCAACTGGATCTGATCCAGCTCCACTGGTGGGATTTCGACGATCCTCGC
TACCTCGACGTTTTGTTTCACCTGGAGGAACTCAAGTTGAAAGGGAAAGT
AAGACACATCGGCGTCACTAATTTTGGAGCCTCACCGCTACAGAGGGCGA
TCGAGAGCGGGGTCAGGATTGTGTCGAACCAAGTGCAATACTCATTGATC
GACCAGAGGGTGAGGACGGTGAAGCTCCGGGCGAGGTTGGAAGGAGGGCA
GGAGGAGGAGGAGGCGATGGAGGACGAGGACGGGAAGAAGGACGAGGATG
ACCCGAGTCGAGGGGCTAGAGCCAGGCCCATGATCTCACTGGCGGATGTG
TGCGTGCGGCAAAACGTCTCCTTGCTCTGTTACGGGACGTTGCTGGGGGG
CTTCCTGAGTGAGAGGTGGATAGGGGTCCCTGAACCCGATCCGAGGGCCT
TCACCTCCACGTCCGAGGAGAAATATTGGGAGATTCTGAGGACATGGGGC
AGCTGGGAAAATTTCCAAATGTTACTTCTGGAGCTGAGGGCCATAGCGAG
GAAGCACCGCGCGAGCGTGGCATTGGTGGCTTTGCGGTGGGTGCTGGACC
AGCCGGGGGTAGGCTCAGTGATTGTAGGGACGAGGCTCGGGTACATCGAT
CATTTAGAAGAGAATAAGAACGTGCTGAAGCTGGCATTGACAGCGCAAGA
TCGCGAAAACTTGGAGAGGGCGGTGAGGGAGGGAGGGAGGGAGATGGGGG
ACGTGGTGGGGGATGTGGGGGTGGAGTATAAACGGGCAGTAATGGAGGTA
GAAGAGAAGTATGTGCAAAGGTCTGATAGGGAGTATTGATAGATGATTTC
CTTCACCTCTTTTCTCTCTCCCTCCTCTATCTTCTTGGATAAAAGGGTTA
GGAATATAGGGCAGGATGTTGGAGGTGGAGAGGGAGATTGGTCAGGTGGG
AATTCGTTTCAAGTGAGCGAAAGAGGAGTGACGATGAGCAAAGAGTGGGT
GAGGGGGACAAAGTAATGCGGTGGGAGGAGAATCAAAACATCTGTAAGAT
ACACAAGACGGAATAAGTGCTTGAAAACTCAATGTGAAGGAAAGAAGACA
CAGGCTCCAAGTTGCTCGTGATGGGCTTCAGGCTGCTCTTGGAAGACATT
CGATTGCACTGCTACTAATTATAAGGTGAGTACAGTAAAAACTTCACGAT
AGCTGCCTTCATTTCAGTGGCTGTAGCTTCAAGGAATAACTCTCCCACTT
TTTATTTTG

protein sequence of jgi.p|Nanoce1779_2|652075

>mRNA_7277-protein ID=mRNA_7277-protein|Name=jgi.p|Nanoce1779_2|652075|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MEDSEDEEDIVVRFFTDIGDDNDDEEEEEQEKPSGPRAYFQDLGLMAEAA
ADMPVDFLTDPEKAYYYLGREEGGGREGGMKTCRLITGTWQLDGRHGYHP
FFVDVKETVRDMVRRDGYTTFDVAPFYGQVERWLGEVRTKIEDPMELEAY
KIFTKLSFPPDQADYRLCDVEAAVDAALFRLRAPQLDLIQLHWWDFDDPR
YLDVLFHLEELKLKGKVRHIGVTNFGASPLQRAIESGVRIVSNQVQYSLI
DQRVRTVKLRARLEGGQEEEEAMEDEDGKKDEDDPSRGARARPMISLADV
CVRQNVSLLCYGTLLGGFLSERWIGVPEPDPRAFTSTSEEKYWEILRTWG
SWENFQMLLLELRAIARKHRASVALVALRWVLDQPGVGSVIVGTRLGYID
HLEENKNVLKLALTAQDRENLERAVREGGREMGDVVGDVGVEYKRAVMEV
EEKYVQRSDREY*

mRNA from alignment at scaffold_19:112122..114450+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7277 ID=mRNA_7277|Name=jgi.p|Nanoce1779_2|652075|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp|location=Sequence derived from alignment at scaffold_19:112122..114450+ (Nannochloropsis oceanica)
ATGGAAGATAGTGAAGACGAGGAGGATATTGTTGTGCGGTTTTTCACGGA
TATTGGGGACGATAACGATGATGAGGAAGAGGAGGAGCAGGAAAAACCAA
GGTGAGGGCGAAGAGAATTGACAAGATAAGGAAGGGTGTGCGTAAACTGA
TTGAGATTGAGTAGGGCAATTATTTAATCAAGGCAAGTCCCTTCTTGCGT
CGCCTGTCACTTATCCCTCCCTCGGTTTCTCTTCCTTCACAAACAGCGGC
CCTCGGGCTTATTTCCAAGACCTCGGCTTAATGGCCGAGGCTGCGGCTGA
CATGCCCGTGGACTTCCTCACAGATCCCGAAAAGGCGTATTACTACTTGG
GACGGGAAGAAGGGGGAGGGAGGGAGGGAGGCATGAAGACCTGCAGACTC
ATCACGGGGACGTGGCAATTGGACGGGCGGCACGGTTACCACCCGTTTTT
CGTGGATGTCAAGGAAACGGTCAGGGATATGGTGAGGAGGGATGGGTATA
CGACGTTCGACGTGGCTCCTTTCTATGGGCAGGTGGAACGGTGGTTGGGG
GAGGTGAGGACGAAGATCGAGGACCCCATGGAGCTGGAAGCGTACAAGGT
AATTTATATTATTATTTATTTATTTTTGTTTATTTCATTTTATTATATTT
AACTATTTCGTTTTGTTTCTTCATCTTTCGATTTTTTTTTACTTGTTTTT
ATTTGGGAAGTAAGTGGATGGCGCTTTCGTTTTTGGGGGCAAGTAAAGCG
GTGGTTGGATGAGGTGAGGATAAGGGACCGCCCGGAGCCGAGGGTTCCTC
CAGGTACGAGGGATGGAGGGAGGGAGGAAGGAAGGATTAATTCTCATCTA
GCAGCCCCTTCCCTGGCCTCAACGCCATACAACTTCTCTCTCTTTACCTT
TCGCGATCGCCTGCGATCGCGTGTCCTTACGCCCCCCCCTTCGTCTCCCT
CCCTCCCTCCCTCTTCCCTCCAGATTTTCACCAAACTATCCTTCCCACCC
GACCAAGCCGACTATCGCCTTTGCGACGTGGAGGCCGCTGTGGACGCCGC
CTTGTTCCGTCTTCGCGCGCCGCAACTGGATCTGATCCAGCTCCACTGGT
GGGATTTCGACGATCCTCGCTACCTCGACGTTTTGTTTCACCTGGAGGAA
CTCAAGTTGAAAGGGAAAGTAAGACACATCGGCGTCACTAATTTTGGAGC
CTCACCGCTACAGAGGGCGATCGAGAGCGGGGTCAGGATTGTGTCGAACC
AAGTGCAATACTCATTGATCGACCAGAGGGTGAGGACGGTGAAGCTCCGG
GCGAGGTTGGAAGGAGGGCAGGAGGAGGAGGAGGCGATGGAGGACGAGGA
CGGGAAGAAGGACGAGGATGACCCGAGTCGAGGGGCTAGAGCCAGGCCCA
TGATCTCACTGGCGGATGTGTGCGTGCGGCAAAACGTCTCCTTGCTCTGT
TACGGGACGTTGCTGGGGGGCTTCCTGAGTGAGAGGTGGATAGGGGTCCC
TGAACCCGATCCGAGGGCCTTCACCTCCACGTCCGAGGAGAAATATTGGG
AGATTCTGAGGACATGGGGCAGCTGGGAAAATTTCCAAATGTTACTTCTG
GAGCTGAGGGCCATAGCGAGGAAGCACCGCGCGAGCGTGGCATTGGTGGC
TTTGCGGTGGGTGCTGGACCAGCCGGGGGTAGGCTCAGTGATTGTAGGGA
CGAGGCTCGGGTACATCGATCATTTAGAAGAGAATAAGAACGTGCTGAAG
CTGGCATTGACAGCGCAAGATCGCGAAAACTTGGAGAGGGCGGTGAGGGA
GGGAGGGAGGGAGATGGGGGACGTGGTGGGGGATGTGGGGGTGGAGTATA
AACGGGCAGTAATGGAGGTAGAAGAGAAGTATGTGCAAAGGTCTGATAGG
GAGTATTGATAGATGATTTCCTTCACCTCTTTTCTCTCTCCCTCCTCTAT
CTTCTTGGATAAAAGGGTTAGGAATATAGGGCAGGATGTTGGAGGTGGAG
AGGGAGATTGGTCAGGTGGGAATTCGTTTCAAGTGAGCGAAAGAGGAGTG
ACGATGAGCAAAGAGTGGGTGAGGGGGACAAAGTAATGCGGTGGGAGGAG
AATCAAAACATCTGTAAGATACACAAGACGGAATAAGTGCTTGAAAACTC
AATGTGAAGGAAAGAAGACACAGGCTCCAAGTTGCTCGTGATGGGCTTCA
GGCTGCTCTTGGAAGACATTCGATTGCACTGCTACTAATTATAAGGTGAG
TACAGTAAAAACTTCACGATAGCTGCCTTCATTTCAGTGGCTGTAGCTTC
AAGGAATAACTCTCCCACTTTTTATTTTG

Coding sequence (CDS) from alignment at scaffold_19:112122..114450+

>mRNA_7277 ID=mRNA_7277|Name=jgi.p|Nanoce1779_2|652075|organism=Nannochloropsis oceanica|type=CDS|length=4167bp|location=Sequence derived from alignment at scaffold_19:112122..114450+ (Nannochloropsis oceanica)
ATGGAAGATAGTGAAGACGAGGAGGATATTGTTGTGCGGTTTTTCACGGA
TATTGGGGACGATAACGATGATGAGGAAGAGGAGGAGCAGGAAAAACCAA
GCGGCCCTCGGGCTTATTTCCAAGACCTCGGCTTAATGGCCGAGGCTGCG
GCTGACATGCCCGTGGACTTCCTCACAGATCCCGAAAAGGCGTATTACTA
CTTGGGACGGGAAGAAGGGGGAGGGAGGGAGGGAGGCATGAAGACCTGCA
GACTCATCACGGGGACGTGGCAATTGGACGGGCGGCACGGTTACCACCCG
TTTTTCGTGGATGTCAAGGAAACGGTCAGGGATATGGTGAGGAGGGATGG
GTATACGACGTTCGACGTGGCTCCTTTCTATGGGCAGGTGGAACGGTGGT
TGGGGGAGGTGAGGACGAAGATCGAGGACCCCATGGAGCTGGAAGCGTAC
AAGATTTTCACCAAACTATCCTTCCCACCCGACCAAGCCGACTATCGCCT
TTGCGACGTGGAGGCCGCTGTGGACGCCGCCTTGTTCCGTCTTCGCGCGC
CGCAACTGGATCTGATCCAGCTCCACTGGTGGGATTTCGACGATCCTCGC
TACCTCGACGTTTTGTTTCACCTGGAGGAACTCAAGTTGAAAGGGAAAGT
AAGACACATCGGCGTCACTAATTTTGGAGCCTCACCGCTACAGAGGGCGA
TCGAGAGCGGGGTCAGGATTGTGTCGAACCAAGTGCAATACTCATTGATC
GACCAGAGGGTGAGGACGGTGAAGCTCCGGGCGAGGTTGGAAGGAGGGCA
GGAGGAGGAGGAGGCGATGGAGGACGAGGACGGGAAGAAGGACGAGGATG
ACCCGAGTCGAGGGGCTAGAGCCAGGCCCATGATCTCACTGGCGGATGTG
TGCGTGCGGCAAAACGTCTCCTTGCTCTGTTACGGGACGTTGCTGGGGGG
CTTCCTGAGTGAGAGGTGGATAGGGGTCCCTGAACCCGATCCGAGGGCCT
TCACCTCCACGTCCGAGGAGAAATATTGGGAGATTCTGAGGACATGGGGC
AGCTGGGAAAATTTCCAAATGTTACTTCTGGAGCTGAGGGCCATAGCGAG
GAAGCACCGCGCGAGCGTGGCATTGGTGGCTTTGCGGTGGGTGCTGGACC
AGCCGGGGGTAGGCTCAGTGATTGTAGGGACGAGGCTCGGGTACATCGAT
CATTTAGAAGAGAATAAGAACGTGCTGAAGCTGGCATTGACAGCGCAAGA
TCGCGAAAACTTGGAGAGGGCGGTGAGGGAGGGAGGGAGGGAGATGGGGG
ACGTGGTGGGGGATGTGGGGGTGGAGTATAAACGGGCAGTAATGGAGGTA
GAAGAGAAGTATGTGCAAAGGTCTGATAGGGAGTATTGAATGGAAGATAG
TGAAGACGAGGAGGATATTGTTGTGCGGTTTTTCACGGATATTGGGGACG
ATAACGATGATGAGGAAGAGGAGGAGCAGGAAAAACCAAGCGGCCCTCGG
GCTTATTTCCAAGACCTCGGCTTAATGGCCGAGGCTGCGGCTGACATGCC
CGTGGACTTCCTCACAGATCCCGAAAAGGCGTATTACTACTTGGGACGGG
AAGAAGGGGGAGGGAGGGAGGGAGGCATGAAGACCTGCAGACTCATCACG
GGGACGTGGCAATTGGACGGGCGGCACGGTTACCACCCGTTTTTCGTGGA
TGTCAAGGAAACGGTCAGGGATATGGTGAGGAGGGATGGGTATACGACGT
TCGACGTGGCTCCTTTCTATGGGCAGGTGGAACGGTGGTTGGGGGAGGTG
AGGACGAAGATCGAGGACCCCATGGAGCTGGAAGCGTACAAGATTTTCAC
CAAACTATCCTTCCCACCCGACCAAGCCGACTATCGCCTTTGCGACGTGG
AGGCCGCTGTGGACGCCGCCTTGTTCCGTCTTCGCGCGCCGCAACTGGAT
CTGATCCAGCTCCACTGGTGGGATTTCGACGATCCTCGCTACCTCGACGT
TTTGTTTCACCTGGAGGAACTCAAGTTGAAAGGGAAAGTAAGACACATCG
GCGTCACTAATTTTGGAGCCTCACCGCTACAGAGGGCGATCGAGAGCGGG
GTCAGGATTGTGTCGAACCAAGTGCAATACTCATTGATCGACCAGAGGGT
GAGGACGGTGAAGCTCCGGGCGAGGTTGGAAGGAGGGCAGGAGGAGGAGG
AGGCGATGGAGGACGAGGACGGGAAGAAGGACGAGGATGACCCGAGTCGA
GGGGCTAGAGCCAGGCCCATGATCTCACTGGCGGATGTGTGCGTGCGGCA
AAACGTCTCCTTGCTCTGTTACGGGACGTTGCTGGGGGGCTTCCTGAGTG
AGAGGTGGATAGGGGTCCCTGAACCCGATCCGAGGGCCTTCACCTCCACG
TCCGAGGAGAAATATTGGGAGATTCTGAGGACATGGGGCAGCTGGGAAAA
TTTCCAAATGTTACTTCTGGAGCTGAGGGCCATAGCGAGGAAGCACCGCG
CGAGCGTGGCATTGGTGGCTTTGCGGTGGGTGCTGGACCAGCCGGGGGTA
GGCTCAGTGATTGTAGGGACGAGGCTCGGGTACATCGATCATTTAGAAGA
GAATAAGAACGTGCTGAAGCTGGCATTGACAGCGCAAGATCGCGAAAACT
TGGAGAGGGCGGTGAGGGAGGGAGGGAGGGAGATGGGGGACGTGGTGGGG
GATGTGGGGGTGGAGTATAAACGGGCAGTAATGGAGGTAGAAGAGAAGTA
TGTGCAAAGGTCTGATAGGGAGTATTGAATGGAAGATAGTGAAGACGAGG
AGGATATTGTTGTGCGGTTTTTCACGGATATTGGGGACGATAACGATGAT
GAGGAAGAGGAGGAGCAGGAAAAACCAAGCGGCCCTCGGGCTTATTTCCA
AGACCTCGGCTTAATGGCCGAGGCTGCGGCTGACATGCCCGTGGACTTCC
TCACAGATCCCGAAAAGGCGTATTACTACTTGGGACGGGAAGAAGGGGGA
GGGAGGGAGGGAGGCATGAAGACCTGCAGACTCATCACGGGGACGTGGCA
ATTGGACGGGCGGCACGGTTACCACCCGTTTTTCGTGGATGTCAAGGAAA
CGGTCAGGGATATGGTGAGGAGGGATGGGTATACGACGTTCGACGTGGCT
CCTTTCTATGGGCAGGTGGAACGGTGGTTGGGGGAGGTGAGGACGAAGAT
CGAGGACCCCATGGAGCTGGAAGCGTACAAGATTTTCACCAAACTATCCT
TCCCACCCGACCAAGCCGACTATCGCCTTTGCGACGTGGAGGCCGCTGTG
GACGCCGCCTTGTTCCGTCTTCGCGCGCCGCAACTGGATCTGATCCAGCT
CCACTGGTGGGATTTCGACGATCCTCGCTACCTCGACGTTTTGTTTCACC
TGGAGGAACTCAAGTTGAAAGGGAAAGTAAGACACATCGGCGTCACTAAT
TTTGGAGCCTCACCGCTACAGAGGGCGATCGAGAGCGGGGTCAGGATTGT
GTCGAACCAAGTGCAATACTCATTGATCGACCAGAGGGTGAGGACGGTGA
AGCTCCGGGCGAGGTTGGAAGGAGGGCAGGAGGAGGAGGAGGCGATGGAG
GACGAGGACGGGAAGAAGGACGAGGATGACCCGAGTCGAGGGGCTAGAGC
CAGGCCCATGATCTCACTGGCGGATGTGTGCGTGCGGCAAAACGTCTCCT
TGCTCTGTTACGGGACGTTGCTGGGGGGCTTCCTGAGTGAGAGGTGGATA
GGGGTCCCTGAACCCGATCCGAGGGCCTTCACCTCCACGTCCGAGGAGAA
ATATTGGGAGATTCTGAGGACATGGGGCAGCTGGGAAAATTTCCAAATGT
TACTTCTGGAGCTGAGGGCCATAGCGAGGAAGCACCGCGCGAGCGTGGCA
TTGGTGGCTTTGCGGTGGGTGCTGGACCAGCCGGGGGTAGGCTCAGTGAT
TGTAGGGACGAGGCTCGGGTACATCGATCATTTAGAAGAGAATAAGAACG
TGCTGAAGCTGGCATTGACAGCGCAAGATCGCGAAAACTTGGAGAGGGCG
GTGAGGGAGGGAGGGAGGGAGATGGGGGACGTGGTGGGGGATGTGGGGGT
GGAGTATAAACGGGCAGTAATGGAGGTAGAAGAGAAGTATGTGCAAAGGT
CTGATAGGGAGTATTGA

Synonyms

Publications