jgi.p|Nanoce1779_2|567764, mRNA_7276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567764
Unique NamemRNA_7276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1176
Alignment locationscaffold_19:109565..110848 -

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Properties
Property NameValue
TranscriptId567850
TrackFilteredModels2
ProteinId567764
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:109565..110848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567764gene_7276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567764mRNA_7276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7276CDS_7276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7276 ID=mRNA_7276|Name=jgi.p|Nanoce1779_2|567764|organism=Nannochloropsis oceanica|type=mRNA|length=1176bp
ATGATCTGGCTGGTGGTTTGTTTTATCGGTATCATGGGCTCGTTTATTGC
CTATGGAATCGTGATGGAATTTGCGACGTCGGGAGGGAGGAAGCTGCATG
AGTTGAGCTTGATCTTCGTGACCTCATTGCTGTACTCAGGGACGGCGTAT
GTAGGCCGGTACGTGCGTGCCGAGAAGCCGACGACGGTGGCGCCGAGTCG
ACTCATGGTGTTGGCCATGACGAGTATGGGATCCACTTATTGCAGTGTGC
GGAGTCTCAGATACGTGATCTACCCAGTTCAAGTCCTGGCCAAGAGCTGC
AAGCCCATCCCCGTAATGCTCATGGGCGCTATAATGGGCAAGAAATATCC
GTTAAAAAAATACGTTAATGTTTTGATTATAACGGCCGGTGTCGCCATGT
TCATGATGGGAAAGCAGTCCAACAACAGCAACAGCAGCAAAACCAAGGAG
AATGCCTCGACAGCTGGCGCGATCTTGCTCTTTATTTCCCTGTCTTTTGA
CGGAGGGACCGGGGCTTACGAGGACAAGCTGATGGCAACCCACCACGTAG
GCCCCTTCGACCTCATGTACAACATGCACCTCGGCAAGGCGATCCTGGCC
GGGATCGGGTTGATTGTCATGGGCCAAATCAATTATTTTATCTTGATGTG
CCATGAGACGGGCTTCCTCCTTCTCCTTCTTGGGGTGAGTGGTGCCTTTG
GCCAGGTGTTCATCTTTGTGACGATTTCGAAGTTTGGAGCCTTGACCTGC
TCGATAATGGGATTGGCTAGGAAGGTCGTGACCCTTGTGGCATCTATATA
TATCTACGGTCATTCCTTAAACGGCATCCAGACGCTCGGGTTGGTGGTGG
CCTTCGCAGCGATGATATCCGGTTTCTTCGAACGGAAGGGCAAGGGAGGG
CATGGTGGTGGTCATGGAGGAGGGGGAGGGGGAGGGAAGACGGGGGAGGT
CTTGGATAGGGAGGGAGGAAGTATGAGCGGTGATGATGGGAGTGGAGGAG
GGAATGGGAAGAACAGCATGGCAGCTTTGGTGGAAAGGGAGAGGAGAGAG
ATACTGAAGCTGGAGGCGAAACCTTTGTTGGCGGCGGCGGATGAGGACGG
GGAGGAGGATGACGAGGGGGAGGGAGGGCTCGTAGGAGATAGAAGATGCT
CAAGACCGAATACAGTGACAGTGTAA
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protein sequence of jgi.p|Nanoce1779_2|567764

>mRNA_7276-protein ID=mRNA_7276-protein|Name=jgi.p|Nanoce1779_2|567764|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MIWLVVCFIGIMGSFIAYGIVMEFATSGGRKLHELSLIFVTSLLYSGTAY
VGRYVRAEKPTTVAPSRLMVLAMTSMGSTYCSVRSLRYVIYPVQVLAKSC
KPIPVMLMGAIMGKKYPLKKYVNVLIITAGVAMFMMGKQSNNSNSSKTKE
NASTAGAILLFISLSFDGGTGAYEDKLMATHHVGPFDLMYNMHLGKAILA
GIGLIVMGQINYFILMCHETGFLLLLLGVSGAFGQVFIFVTISKFGALTC
SIMGLARKVVTLVASIYIYGHSLNGIQTLGLVVAFAAMISGFFERKGKGG
HGGGHGGGGGGGKTGEVLDREGGSMSGDDGSGGGNGKNSMAALVERERRE
ILKLEAKPLLAAADEDGEEDDEGEGGLVGDRRCSRPNTVTV*
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mRNA from alignment at scaffold_19:109565..110848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7276 ID=mRNA_7276|Name=jgi.p|Nanoce1779_2|567764|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp|location=Sequence derived from alignment at scaffold_19:109565..110848- (Nannochloropsis oceanica)
ATGATCTGGCTGGTGGTTTGTTTTATCGGTATCATGGGCTCGTTTATTGC
CTATGGAATCGTGATGGAATTTGCGACGTCGGGAGGGAGGAAGCTGCATG
AGTTGAGCTTGATCTTCGTGACCTCATTGCTGTACTCAGGGACGGCGTAT
GTAGGCCGGTACGTGCGTGCCGAGAAGCCGACGACGGTGGCGCCGAGTCG
ACTCATGGTGTTGGCCATGACGAGTATGGGATCCACTTATTGCAGTGTGC
GGAGTCTCAGGTAACGCTCAAATTATATCATTCACGTTATATTATGATTC
ATTCATCTCTTGTATATTCATTTACTGATTGAATTTTCTTCATTTCTTTC
CGCCCTCTTCATCTCCAGATACGTGATCTACCCAGTTCAAGTCCTGGCCA
AGAGCTGCAAGCCCATCCCCGTAATGCTCATGGGCGCTATAATGGGCAAG
AAATATCCGTTAAAAAAATACGTTAATGTTTTGATTATAACGGCCGGTGT
CGCCATGTTCATGATGGGAAAGCAGTCCAACAACAGCAACAGCAGCAAAA
CCAAGGAGAATGCCTCGACAGCTGGCGCGATCTTGCTCTTTATTTCCCTG
TCTTTTGACGGAGGGACCGGGGCTTACGAGGACAAGCTGATGGCAACCCA
CCACGTAGGCCCCTTCGACCTCATGTACAACATGCACCTCGGCAAGGCGA
TCCTGGCCGGGATCGGGTTGATTGTCATGGGCCAAATCAATTATTTTATC
TTGATGTGCCATGAGACGGGCTTCCTCCTTCTCCTTCTTGGGGTGAGTGG
TGCCTTTGGCCAGGTGTTCATCTTTGTGACGATTTCGAAGTTTGGAGCCT
TGACCTGCTCGATAATGGGATTGGCTAGGAAGGTCGTGACCCTTGTGGCA
TCTATATATATCTACGGTCATTCCTTAAACGGCATCCAGACGCTCGGGTT
GGTGGTGGCCTTCGCAGCGATGATATCCGGTTTCTTCGAACGGAAGGGCA
AGGGAGGGCATGGTGGTGGTCATGGAGGAGGGGGAGGGGGAGGGAAGACG
GGGGAGGTCTTGGATAGGGAGGGAGGAAGTATGAGCGGTGATGATGGGAG
TGGAGGAGGGAATGGGAAGAACAGCATGGCAGCTTTGGTGGAAAGGGAGA
GGAGAGAGATACTGAAGCTGGAGGCGAAACCTTTGTTGGCGGCGGCGGAT
GAGGACGGGGAGGAGGATGACGAGGGGGAGGGAGGGCTCGTAGGAGATAG
AAGATGCTCAAGACCGAATACAGTGACAGTGTAA
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Coding sequence (CDS) from alignment at scaffold_19:109565..110848-

>mRNA_7276 ID=mRNA_7276|Name=jgi.p|Nanoce1779_2|567764|organism=Nannochloropsis oceanica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_19:109565..110848- (Nannochloropsis oceanica)
ATACGTGATCTACCCAGTTCAAGTCCTGGCCAAGAGCTGCAAGCCCATCC
CCGTAATGCTCATGGGCGCTATAATGGGCAAGAAATATCCGTTAAAAAAA
TACGTTAATGTTTTGATTATAACGGCCGGTGTCGCCATGTTCATGATGGG
AAAGCAGTCCAACAACAGCAACAGCAGCAAAACCAAGGAGAATGCCTCGA
CAGCTGGCGCGATCTTGCTCTTTATTTCCCTGTCTTTTGACGGAGGGACC
GGGGCTTACGAGGACAAGCTGATGGCAACCCACCACGTAGGCCCCTTCGA
CCTCATGTACAACATGCACCTCGGCAAGGCGATCCTGGCCGGGATCGGGT
TGATTGTCATGGGCCAAATCAATTATTTTATCTTGATGTGCCATGAGACG
GGCTTCCTCCTTCTCCTTCTTGGGGTGAGTGGTGCCTTTGGCCAGGTGTT
CATCTTTGTGACGATTTCGAAGTTTGGAGCCTTGACCTGCTCGATAATGG
GATTGGCTAGGAAGGTCGTGACCCTTGTGGCATCTATATATATCTACGGT
CATTCCTTAAACGGCATCCAGACGCTCGGGTTGGTGGTGGCCTTCGCAGC
GATGATATCCGGTTTCTTCGAACGGAAGGGCAAGGGAGGGCATGGTGGTG
GTCATGGAGGAGGGGGAGGGGGAGGGAAGACGGGGGAGGTCTTGGATAGG
GAGGGAGGAAGTATGAGCGGTGATGATGGGAGTGGAGGAGGGAATGGGAA
GAACAGCATGGCAGCTTTGGTGGAAAGGGAGAGGAGAGAGATACTGAAGC
TGGAGGCGAAACCTTTGTTGGCGGCGGCGGATGAGGACGGGGAGGAGGAT
GACGAGGGGGAGGGAGGGCTCGTAGGAGATAGAAGATGCTCAAGACCGAA
TACAGTGACAGTGTAAATGATCTGGCTGGTGGTTTGTTTTATCGGTATCA
TGGGCTCGTTTATTGCCTATGGAATCGTGATGGAATTTGCGACGTCGGGA
GGGAGGAAGCTGCATGAGTTGAGCTTGATCTTCGTGACCTCATTGCTGTA
CTCAGGGACGGCGTATGTAGGCCGGTACGTGCGTGCCGAGAAGCCGACGA
CGGTGGCGCCGAGTCGACTCATGGTGTTGGCCATGACGAGTATGGGATCC
ACTTATTGCAGTGTGCGGAGTCTCAGATACGTGATCTACCCAGTTCAAGT
CCTGGCCAAGAGCTGCAAGCCCATCCCCGTAATGCTCATGGGCGCTATAA
TGGGCAAGAAATATCCGTTAAAAAAATACGTTAATGTTTTGATTATAACG
GCCGGTGTCGCCATGTTCATGATGGGAAAGCAGTCCAACAACAGCAACAG
CAGCAAAACCAAGGAGAATGCCTCGACAGCTGGCGCGATCTTGCTCTTTA
TTTCCCTGTCTTTTGACGGAGGGACCGGGGCTTACGAGGACAAGCTGATG
GCAACCCACCACGTAGGCCCCTTCGACCTCATGTACAACATGCACCTCGG
CAAGGCGATCCTGGCCGGGATCGGGTTGATTGTCATGGGCCAAATCAATT
ATTTTATCTTGATGTGCCATGAGACGGGCTTCCTCCTTCTCCTTCTTGGG
GTGAGTGGTGCCTTTGGCCAGGTGTTCATCTTTGTGACGATTTCGAAGTT
TGGAGCCTTGACCTGCTCGATAATGGGATTGGCTAGGAAGGTCGTGACCC
TTGTGGCATCTATATATATCTACGGTCATTCCTTAAACGGCATCCAGACG
CTCGGGTTGGTGGTGGCCTTCGCAGCGATGATATCCGGTTTCTTCGAACG
GAAGGGCAAGGGAGGGCATGGTGGTGGTCATGGAGGAGGGGGAGGGGGAG
GGAAGACGGGGGAGGTCTTGGATAGGGAGGGAGGAAGTATGAGCGGTGAT
GATGGGAGTGGAGGAGGGAATGGGAAGAACAGCATGGCAGCTTTGGTGGA
AAGGGAGAGGAGAGAGATACTGAAGCTGGAGGCGAAACCTTTGTTGGCGG
CGGCGGATGAGGACGGGGAGGAGGATGACGAGGGGGAGGGAGGGCTCGTA
GGAGATAGAAGATGCTCAAGACCGAATACAGTGACAGTGTAAATGATCTG
GCTGGTGGTTTGTTTTATCGGTATCATGGGCTCGTTTATTGCCTATGGAA
TCGTGATGGAATTTGCGACGTCGGGAGGGAGGAAGCTGCATGAGTTGAGC
TTGATCTTCGTGACCTCATTGCTGTACTCAGGGACGGCGTATGTAGGCCG
GTACGTGCGTGCCGAGAAGCCGACGACGGTGGCGCCGAGTCGACTCATGG
TGTTGGCCATGACGAGTATGGGATCCACTTATTGCAGTGTGCGGAGTCTC
AG
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Synonyms
Publications