jgi.p|Nanoce1779_2|545053, mRNA_7275 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|545053
Unique Name	mRNA_7275
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1785
Alignment location	scaffold_19:107143..108927 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	545139
Track	FilteredModels2
ProteinId	545053

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:107143..108927 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545053	gene_7275	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545053	mRNA_7275-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7275	CDS_7275	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:107143..108927-
coding sequence from alignment at scaffold_19:107143..108927-

mRNA sequence

>mRNA_7275 ID=mRNA_7275|Name=jgi.p|Nanoce1779_2|545053|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
GACCGATTTTGCCCCATCCTTCCCCCATCCCACACACCACAGAGATGACT
GCAGCACCGCGACTTTGATCCATCAGCACTGCCACATTCTCAGCAATATG
GAATACACTCCGAGGGTCCTACCCTGGCAGGATTGGGCCGAATGGACCGA
GACTAGCAAGTGGCTCTTTTCACCCGACACAGACAGCCGGCTGCGGGGTG
TAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGACTTCCCGTGGCCATA
GACGCCACCGCATCCCTGTTAGAAGTAGCTTTACTTGAAAGTGGTCTTAA
TGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGTACGGCATGGTGATCA
CACGGGCTATCAATGGTCTCGTCGAAGGGCTACAAACCAAATTTTATGCT
GAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGATCTCGCAGTGGCTGGT
AGATCTCCGTCACGAAGCTACACATGCGAGTCTTCCTTCGCTGGCCACAC
TTAGAATGGGGGCCCAGCATTTATTGGATTGGCTTTACCGAGGGTACTGG
GAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGCCGCCGCCACTTACAT
TTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCACAGGAAGAATCCCCTA
ATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAAAAAGGTGTGGGGAAT
GGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAGCAGTAGCAGCAGCAG
CAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGACGGCTAGTGACGCTC
GTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCGGTCACACCCTCCTTT
GTCACCACCTTCCTCCTTCCTGCCCTGGTACGCATCTCACCAGAAGAAAG
CTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCTTCCTCCTCCCCGACC
ACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCCTCAGCAGTCTCAACA
AAACCAACCACATTCCCTACAACAATCCTACACACCCCTCCTGAGATCAA
AGCAATGCACGAAGCCAAGCATCGACAGCTATATGCTCCCTTGCTAATTC
GCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCCTTATTTTCCCGACTT
GCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAAAAGAGTAACTGTAGG
AGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAGAAGCAGCAGCAGAAG
AAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACCTCCCCCTTCCCGTAT
ACCTACAGCATGTGGCTCTCATACCTTCGAAGCAAAGACTGGCACTCCCA
CTTTGCCTATGGACGATCCGAGGCTTTATTTGCCTTGCGACGGGCCCCTG
GGATACGGTTTAATTTAAGGGACAAGGCGCAGGGCAGCTGGACGAGTGCA
GAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCCTGTGCAGACACAGGG
GCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGGAGGAAGTGGAGGAAG
AGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTGAGGTGTAAGGAGTGG
ATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCTTGACAGCAAGGGGTT
CTGAAGTTAAGGAAATGAGAGGCAAAATAATCGATCAAATTTAAACTGGT
GAGAAGAGGGAAACGAAGTAGTTGAGACCGTGTTGTTGATTGAATCAGGG
CAAAATACAAAGTTTTGTTGCTTTCCTTTCTACCG

protein sequence of jgi.p|Nanoce1779_2|545053

>mRNA_7275-protein ID=mRNA_7275-protein|Name=jgi.p|Nanoce1779_2|545053|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MEYTPRVLPWQDWAEWTETSKWLFSPDTDSRLRGVGRVKAWRARGRLPVA
IDATASLLEVALLESGLNGSRSALELRNLYGMVITRAINGLVEGLQTKFY
AEPVNAVAARLGISQWLVDLRHEATHASLPSLATLRMGAQHLLDWLYRGY
WEKQAHDLESAAAAATYILVSYKNVALAAQEESPNALCRACRAPKEKGVG
NGNGSNGSSGNSSSSSSSSSSISGGGGIKTASDARLAEALDGLLASVTPS
FVTTFLLPALVRISPEESSSSSSSPETSFFLLPDHHLEAEAAAVAASAVS
TKPTTFPTTILHTPPEIKAMHEAKHRQLYAPLLIRLQRKFPGFAHSLFSR
LAATGMVQCREGKRVTVGEEEKAARTAESEAAAEEGGVTSPPSPTTSPFP
YTYSMWLSYLRSKDWHSHFAYGRSEALFALRRAPGIRFNLRDKAQGSWTS
AEREYMCSPACLPVQTQGLGLGPWVGVGEEEVEEEKGEEGEEEGWVRCKE
WMPCPLGGPILRLDSKGF*

mRNA from alignment at scaffold_19:107143..108927-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7275 ID=mRNA_7275|Name=jgi.p|Nanoce1779_2|545053|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp|location=Sequence derived from alignment at scaffold_19:107143..108927- (Nannochloropsis oceanica)
GACCGATTTTGCCCCATCCTTCCCCCATCCCACACACCACAGAGATGACT
GCAGCACCGCGACTTTGATCCATCAGCACTGCCACATTCTCAGCAATATG
GAATACACTCCGAGGGTCCTACCCTGGCAGGATTGGGCCGAATGGACCGA
GACTAGCAAGTGGCTCTTTTCACCCGACACAGACAGCCGGCTGCGGGGTG
TAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGACTTCCCGTGGCCATA
GACGCCACCGCATCCCTGTTAGAAGTAGCTTTACTTGAAAGTGGTCTTAA
TGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGTACGGCATGGTGATCA
CACGGGCTATCAATGGTCTCGTCGAAGGGCTACAAACCAAATTTTATGCT
GAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGATCTCGCAGTGGCTGGT
AGATCTCCGTCACGAAGCTACACATGCGAGTCTTCCTTCGCTGGCCACAC
TTAGAATGGGGGCCCAGCATTTATTGGATTGGCTTTACCGAGGGTACTGG
GAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGCCGCCGCCACTTACAT
TTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCACAGGAAGAATCCCCTA
ATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAAAAAGGTGTGGGGAAT
GGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAGCAGTAGCAGCAGCAG
CAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGACGGCTAGTGACGCTC
GTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCGGTCACACCCTCCTTT
GTCACCACCTTCCTCCTTCCTGCCCTGGTACGCATCTCACCAGAAGAAAG
CTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCTTCCTCCTCCCCGACC
ACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCCTCAGCAGTCTCAACA
AAACCAACCACATTCCCTACAACAATCCTACACACCCCTCCTGAGATCAA
AGCAATGCACGAAGCCAAGCATCGACAGCTATATGCTCCCTTGCTAATTC
GCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCCTTATTTTCCCGACTT
GCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAAAAGAGTAACTGTAGG
AGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAGAAGCAGCAGCAGAAG
AAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACCTCCCCCTTCCCGTAT
ACCTACAGCATGTGGCTCTCATACCTTCGAAGCAAAGACTGGCACTCCCA
CTTTGCCTATGGACGATCCGAGGCTTTATTTGCCTTGCGACGGGCCCCTG
GGATACGGTTTAATTTAAGGGACAAGGCGCAGGGCAGCTGGACGAGTGCA
GAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCCTGTGCAGACACAGGG
GCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGGAGGAAGTGGAGGAAG
AGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTGAGGTGTAAGGAGTGG
ATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCTTGACAGCAAGGGGTT
CTGAAGTTAAGGAAATGAGAGGCAAAATAATCGATCAAATTTAAACTGGT
GAGAAGAGGGAAACGAAGTAGTTGAGACCGTGTTGTTGATTGAATCAGGG
CAAAATACAAAGTTTTGTTGCTTTCCTTTCTACCG

Coding sequence (CDS) from alignment at scaffold_19:107143..108927-

>mRNA_7275 ID=mRNA_7275|Name=jgi.p|Nanoce1779_2|545053|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_19:107143..108927- (Nannochloropsis oceanica)
ATGGAATACACTCCGAGGGTCCTACCCTGGCAGGATTGGGCCGAATGGAC
CGAGACTAGCAAGTGGCTCTTTTCACCCGACACAGACAGCCGGCTGCGGG
GTGTAGGGCGAGTCAAGGCCTGGCGTGCCCGGGGTCGACTTCCCGTGGCC
ATAGACGCCACCGCATCCCTGTTAGAAGTAGCTTTACTTGAAAGTGGTCT
TAATGGGAGTCGATCGGCGTTGGAGCTTCGGAATTTGTACGGCATGGTGA
TCACACGGGCTATCAATGGTCTCGTCGAAGGGCTACAAACCAAATTTTAT
GCTGAGCCAGTAAATGCCGTGGCTGCCCGCTTGGGGATCTCGCAGTGGCT
GGTAGATCTCCGTCACGAAGCTACACATGCGAGTCTTCCTTCGCTGGCCA
CACTTAGAATGGGGGCCCAGCATTTATTGGATTGGCTTTACCGAGGGTAC
TGGGAGAAGCAGGCGCATGACCTGGAGTCAGCCGCCGCCGCCGCCACTTA
CATTTTGGTTTCCTATAAAAATGTGGCGCTGGCGGCACAGGAAGAATCCC
CTAATGCCCTGTGCCGAGCATGTCGGGCACCGAAAGAAAAAGGTGTGGGG
AATGGGAATGGCAGCAATGGCAGCAGTGGCAACAGTAGCAGTAGCAGCAG
CAGCAGCAGTAGTATTAGCGGTGGTGGTGGAATCAAGACGGCTAGTGACG
CTCGTTTGGCTGAAGCCTTGGATGGACTCCTCGCTTCGGTCACACCCTCC
TTTGTCACCACCTTCCTCCTTCCTGCCCTGGTACGCATCTCACCAGAAGA
AAGCTCCTCCTCCTCTTCCTCCCCCGAGACCTCCTTCTTCCTCCTCCCCG
ACCACCACCTCGAAGCCGAAGCGGCAGCAGTGGCCGCCTCAGCAGTCTCA
ACAAAACCAACCACATTCCCTACAACAATCCTACACACCCCTCCTGAGAT
CAAAGCAATGCACGAAGCCAAGCATCGACAGCTATATGCTCCCTTGCTAA
TTCGCCTCCAACGAAAATTTCCGGGCTTCGCCCACTCCTTATTTTCCCGA
CTTGCTGCCACCGGCATGGTTCAGTGTAGAGAAGGGAAAAGAGTAACTGT
AGGAGAAGAAGAGAAAGCAGCAAGAACAGCAGAATCAGAAGCAGCAGCAG
AAGAAGGAGGAGTAACAAGCCCCCCCTCCCCCACCACCTCCCCCTTCCCG
TATACCTACAGCATGTGGCTCTCATACCTTCGAAGCAAAGACTGGCACTC
CCACTTTGCCTATGGACGATCCGAGGCTTTATTTGCCTTGCGACGGGCCC
CTGGGATACGGTTTAATTTAAGGGACAAGGCGCAGGGCAGCTGGACGAGT
GCAGAGAGGGAATATATGTGCTCTCCGGCTTGTCTTCCTGTGCAGACACA
GGGGCTGGGCCTCGGGCCGTGGGTTGGGGTTGGAGAGGAGGAAGTGGAGG
AAGAGAAGGGTGAAGAGGGGGAGGAAGAGGGTTGGGTGAGGTGTAAGGAG
TGGATGCCTTGTCCTTTGGGAGGGCCTATACTGAGGCTTGACAGCAAGGG
GTTCTGA

Synonyms

Publications