jgi.p|Nanoce1779_2|129353, mRNA_7274 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|129353
Unique NamemRNA_7274
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1018
Alignment locationscaffold_19:106009..107129 +

Link to JBrowse

Properties
Property NameValue
TranscriptId129439
TrackFilteredModels2
ProteinId129353
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:106009..107129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|129353gene_7274Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|129353mRNA_7274-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7274CDS_7274Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7274 ID=mRNA_7274|Name=jgi.p|Nanoce1779_2|129353|organism=Nannochloropsis oceanica|type=mRNA|length=1018bp
CCACCTAAATCGAGTTTGGTGGTGCGTCCCACTCTTTGTTTACGGATCCC
ATCCACCACTGCTCTCTAACAAGCCACGACTAACTTATAACCATCCTGTG
CATACACAGGTCTTCATCACTTTACTCCGTCCGCCCACTAACGTCGTGAA
AGCAGCCCCGCCTGACGCACGTATGGCCTCCAGACAGATCTCCGTGCTGC
AACTAGCAGTGCTGCAAGCCGGTGTCCTTCTAGCCATGCTACTCATCCAG
ACTCCCAATCCCAGCCAGGCCTTCCTCCTGCCCAAGATAATACGACAAGG
TCGTGTTGGTGATCAGCAACCGCAACTGCGACTGCGGCATGCCCAGATCT
ACTCCCCCACATCCTTCTACGCCTCGGAACCCAAACGCCTCACTATCACC
GAACAGCTCAAGTTCTCCCCAAACCGATGGAAGCGGAATGGCGAGCCACT
TGAACCTGGTTACGGAGGGATCTGGCCGGGCAACCCTGATGCCAAGACGT
ATAAGGTGACCGTCATGGACCCCCGATCCAAGACTAATTATACGATGGAC
GTTCCTGAGGATCGGTACATTTTCTTTGCCTTTGAAGATGCTGGGGTGGA
CTTGCCGTTAATGAACGGGAAAAGGATGTGCCGCAATGGGTGCTGTACGA
CATGTGCGGTTAAAATGACGGAGGGAAAAGTAAAGATGGAAGCTGCTTTA
GGGCTGTTGCGAGAGATGAAACAGGCGGGATATGCATTGACGTGCTGTTC
ATTGCCCAAGTCGGACATAGTGTGTGAGTTGCAGGATGAGGATGAGGTAT
ACAAAAAACAGTGGGGAGAGACGTTCGAGGGTGGGGGGGTGGAATGGGGC
GGATTTCTGCCGGAGGATGATTAAGAAAAAGGGGAGGAGGAAAATAATCT
CTAGAAAATGGAGAAAGGGGAGAAAGAAAAATGAGGAGAACTAGGTTGGA
GAGAGAGAAGAGAGATTAAATGAGAGGAGAGCTCCGATCCGCTTTTGATT
TTGAGTTGGGGCTACTTG
back to top

protein sequence of jgi.p|Nanoce1779_2|129353

>mRNA_7274-protein ID=mRNA_7274-protein|Name=jgi.p|Nanoce1779_2|129353|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MASRQISVLQLAVLQAGVLLAMLLIQTPNPSQAFLLPKIIRQGRVGDQQP
QLRLRHAQIYSPTSFYASEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGI
WPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGK
RMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIV
CELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD*
back to top

mRNA from alignment at scaffold_19:106009..107129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7274 ID=mRNA_7274|Name=jgi.p|Nanoce1779_2|129353|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at scaffold_19:106009..107129+ (Nannochloropsis oceanica)
CCACCTAAATCGAGTTTGGTGGTGCGTCCCACTCTTTGTTTACGGATCCC
ATCCACCACTGCTCTCTAACAAGCCACGACTAACTTATAACCATCCTGTG
CATACACAGGTCTTCATCACTTTACTCCGTCCGCCCACTAACGTCGTGAA
AGCAGCCCCGCCTGACGCACGTATGGCCTCCAGACAGATCTCCGTGCTGC
AACTAGCAGTGCTGCAAGCCGGTGTCCTTCTAGCCATGCTACTCATCCAG
ACTCCCAATCCCAGCCAGGCCTTCCTCCTGCCCAAGATAATACGACAAGG
TCGTGTTGGTGATCAGCAACCGCAACTGCGACTGCGGCATGCCCAGATCT
ACTCCCCCACATCCTTCTACGCCTCGGAACCCAAACGCCTCACTATCACC
GAACAGCTCAAGTTCTCCCCAAACCGATGGAAGCGGAATGGCGAGCCACT
TGAACCTGGTTACGGAGGGATCTGGCCGGGCAACCCTGATGCCAAGACGT
ATAAGGTAAACTCGGGTGCTTTCGTTGAGAGCGGATCGTGTTGATTCATG
CCGCTCTCTTTTCCCTTACCTCACCCTTCCCTCCCCCTCTCCCGTCTTTC
CCTCCCAGGTGACCGTCATGGACCCCCGATCCAAGACTAATTATACGATG
GACGTTCCTGAGGATCGGTACATTTTCTTTGCCTTTGAAGATGCTGGGGT
GGACTTGCCGTTAATGAACGGGAAAAGGATGTGCCGCAATGGGTGCTGTA
CGACATGTGCGGTTAAAATGACGGAGGGAAAAGTAAAGATGGAAGCTGCT
TTAGGGCTGTTGCGAGAGATGAAACAGGCGGGATATGCATTGACGTGCTG
TTCATTGCCCAAGTCGGACATAGTGTGTGAGTTGCAGGATGAGGATGAGG
TATACAAAAAACAGTGGGGAGAGACGTTCGAGGGTGGGGGGGTGGAATGG
GGCGGATTTCTGCCGGAGGATGATTAAGAAAAAGGGGAGGAGGAAAATAA
TCTCTAGAAAATGGAGAAAGGGGAGAAAGAAAAATGAGGAGAACTAGGTT
GGAGAGAGAGAAGAGAGATTAAATGAGAGGAGAGCTCCGATCCGCTTTTG
ATTTTGAGTTGGGGCTACTTG
back to top

Coding sequence (CDS) from alignment at scaffold_19:106009..107129+

>mRNA_7274 ID=mRNA_7274|Name=jgi.p|Nanoce1779_2|129353|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at scaffold_19:106009..107129+ (Nannochloropsis oceanica)
ATGGCCTCCAGACAGATCTCCGTGCTGCAACTAGCAGTGCTGCAAGCCGG
TGTCCTTCTAGCCATGCTACTCATCCAGACTCCCAATCCCAGCCAGGCCT
TCCTCCTGCCCAAGATAATACGACAAGGTCGTGTTGGTGATCAGCAACCG
CAACTGCGACTGCGGCATGCCCAGATCTACTCCCCCACATCCTTCTACGC
CTCGGAACCCAAACGCCTCACTATCACCGAACAGCTCAAGTTCTCCCCAA
ACCGATGGAAGCGGAATGGCGAGCCACTTGAACCTGGTTACGGAGGGATC
TGGCCGGGCAACCCTGATGCCAAGACGTATAAGGTGACCGTCATGGACCC
CCGATCCAAGACTAATTATACGATGGACGTTCCTGAGGATCGGTACATTT
TCTTTGCCTTTGAAGATGCTGGGGTGGACTTGCCGTTAATGAACGGGAAA
AGGATGTGCCGCAATGGGTGCTGTACGACATGTGCGGTTAAAATGACGGA
GGGAAAAGTAAAGATGGAAGCTGCTTTAGGGCTGTTGCGAGAGATGAAAC
AGGCGGGATATGCATTGACGTGCTGTTCATTGCCCAAGTCGGACATAGTG
TGTGAGTTGCAGGATGAGGATGAGGTATACAAAAAACAGTGGGGAGAGAC
GTTCGAGGGTGGGGGGGTGGAATGGGGCGGATTTCTGCCGGAGGATGATT
AAATGGCCTCCAGACAGATCTCCGTGCTGCAACTAGCAGTGCTGCAAGCC
GGTGTCCTTCTAGCCATGCTACTCATCCAGACTCCCAATCCCAGCCAGGC
CTTCCTCCTGCCCAAGATAATACGACAAGGTCGTGTTGGTGATCAGCAAC
CGCAACTGCGACTGCGGCATGCCCAGATCTACTCCCCCACATCCTTCTAC
GCCTCGGAACCCAAACGCCTCACTATCACCGAACAGCTCAAGTTCTCCCC
AAACCGATGGAAGCGGAATGGCGAGCCACTTGAACCTGGTTACGGAGGGA
TCTGGCCGGGCAACCCTGATGCCAAGACGTATAAGGTGACCGTCATGGAC
CCCCGATCCAAGACTAATTATACGATGGACGTTCCTGAGGATCGGTACAT
TTTCTTTGCCTTTGAAGATGCTGGGGTGGACTTGCCGTTAATGAACGGGA
AAAGGATGTGCCGCAATGGGTGCTGTACGACATGTGCGGTTAAAATGACG
GAGGGAAAAGTAAAGATGGAAGCTGCTTTAGGGCTGTTGCGAGAGATGAA
ACAGGCGGGATATGCATTGACGTGCTGTTCATTGCCCAAGTCGGACATAG
TGTGTGAGTTGCAGGATGAGGATGAGGTATACAAAAAACAGTGGGGAGAG
ACGTTCGAGGGTGGGGGGGTGGAATGGGGCGGATTTCTGCCGGAGGATGA
TTAA
back to top
Synonyms
Publications