jgi.p|Nanoce1779_2|598072, mRNA_7273 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598072
Unique NamemRNA_7273
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1229
Alignment locationscaffold_19:104771..105999 -

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Properties
Property NameValue
TranscriptId598158
TrackFilteredModels2
ProteinId598072
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:104771..105999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598072gene_7273Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598072mRNA_7273-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7273CDS_7273Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7273 ID=mRNA_7273|Name=jgi.p|Nanoce1779_2|598072|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
AAGACGAGAGACACTTCAACCTTGTTGTTCGCTGGCACCTAGGGTGCACA
CCCGCAGTCACACAGAGCGCCAGTCTTCTTCTTCTTATCATCTTGATTAA
GCTTCCTGATGTATTTTCTCACTCTTTTTCGACCCCGCAGACACTATTTC
ATCTGGTCTTTTGCGCCCGCAGCACCACTTCACGAACCGGGGGTGGAGAA
GTAATTGCAAGACCAAGGCAAACGAGACGAGAGAATGACCCACCGGCACC
ATCAAATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGG
GAGGATGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGA
CTTCTTACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGC
GAGGCGTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAAC
ATTTTTGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGA
CGTGGGTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCT
GTCAGTGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGG
GAGAAGGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGG
GGATTTGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAGAGGGGGGGT
TTGCGGAGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTG
GCGGCCGCCGTAAAAGCAAGCACCGTCTTTTATTTCTATCTACTTCCCGC
AGTACTAGACAAACTTACGCCCTGGCTATTTTCTCGCTTGGAAAGAGCCA
GACCAGGTCACCTGACATACATTTTCAATACATGGGCACCAGCCTCGGCC
GAACTCGAGACGCGGTTCCTGGCCCCGCCGTACGATCGGGCAGAGCAGAG
CAAGCGTGGCTTCTTTCTCTTTCAATCATGATAAAACAGTAGAGAGTATC
ACAGATTATATTTGGTAAAGTCTAAAAGAAAAGAGTTGGACATCAAAATG
TTGACATTTGCCTGTGGGTGGGGAGGTTGACGGGAGCTGCATTTTTACAT
GAACAGCCTTTCGTTGGCTCTGCCATTCATTCTAAGCAGCCCCAAAAAAT
ACAATGGTATCAGGATCCAAAAGACTTGGCATATTTACTTTATGCCTGTT
GTTTGCTTGAATTTTCCGAAATTATTGAG
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protein sequence of jgi.p|Nanoce1779_2|598072

>mRNA_7273-protein ID=mRNA_7273-protein|Name=jgi.p|Nanoce1779_2|598072|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MTHRHHQMHDSGISTPLQSTGGEDDDPELAKKMRLYPQDFLLVKPQIGTF
GFAWARGVVSPFVSSKRDKMDNIFAVIGSLLTGSAVVMDVGCGDGAFLLE
AARFGCQCYGLEIDAVLAELAREKAKEQKKSNLVQIFEGDLFDVLSDLNA
EEEGGFAERKEEGSGRDSHALVAAAVKASTVFYFYLLPAVLDKLTPWLFS
RLERARPGHLTYIFNTWAPASAELETRFLAPPYDRAEQSKRGFFLFQS*
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mRNA from alignment at scaffold_19:104771..105999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7273 ID=mRNA_7273|Name=jgi.p|Nanoce1779_2|598072|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at scaffold_19:104771..105999- (Nannochloropsis oceanica)
AAGACGAGAGACACTTCAACCTTGTTGTTCGCTGGCACCTAGGGTGCACA
CCCGCAGTCACACAGAGCGCCAGTCTTCTTCTTCTTATCATCTTGATTAA
GCTTCCTGATGTATTTTCTCACTCTTTTTCGACCCCGCAGACACTATTTC
ATCTGGTCTTTTGCGCCCGCAGCACCACTTCACGAACCGGGGGTGGAGAA
GTAATTGCAAGACCAAGGCAAACGAGACGAGAGAATGACCCACCGGCACC
ATCAAATGCATGATTCTGGTATATCAACACCCCTTCAAAGTACTGGTGGG
GAGGATGACGACCCAGAGCTGGCCAAGAAAATGCGACTGTACCCACAAGA
CTTCTTACTGGTGAAGCCTCAGATCGGCACATTCGGGTTTGCCTGGGCGC
GAGGCGTGGTCAGTCCCTTTGTCAGCAGCAAACGAGACAAGATGGACAAC
ATTTTTGCAGTCATCGGAAGTTTGTTGACCGGGTCCGCGGTGGTGATGGA
CGTGGGTTGTGGGGATGGAGCTTTTTTGCTTGAGGCCGCTCGATTTGGCT
GTCAGTGCTACGGACTCGAGATTGATGCAGTGCTCGCAGAGCTTGCGCGG
GAGAAGGCCAAGGAGCAAAAAAAGAGCAATTTAGTTCAGATATTTGAGGG
GGATTTGTTTGATGTTTTGAGTGATTTGAATGCGGAAGAAGAGGGGGGGT
TTGCGGAGAGGAAGGAAGAGGGCAGTGGGAGAGATAGTCACGCCCTGGTG
GCGGCCGCCGTAAAAGCAAGCACCGTCTTTTATTTCTATCTACTTCCCGC
AGTACTAGACAAACTTACGCCCTGGCTATTTTCTCGCTTGGAAAGAGCCA
GACCAGGTCACCTGACATACATTTTCAATACATGGGCACCAGCCTCGGCC
GAACTCGAGACGCGGTTCCTGGCCCCGCCGTACGATCGGGCAGAGCAGAG
CAAGCGTGGCTTCTTTCTCTTTCAATCATGATAAAACAGTAGAGAGTATC
ACAGATTATATTTGGTAAAGTCTAAAAGAAAAGAGTTGGACATCAAAATG
TTGACATTTGCCTGTGGGTGGGGAGGTTGACGGGAGCTGCATTTTTACAT
GAACAGCCTTTCGTTGGCTCTGCCATTCATTCTAAGCAGCCCCAAAAAAT
ACAATGGTATCAGGATCCAAAAGACTTGGCATATTTACTTTATGCCTGTT
GTTTGCTTGAATTTTCCGAAATTATTGAG
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Coding sequence (CDS) from alignment at scaffold_19:104771..105999-

>mRNA_7273 ID=mRNA_7273|Name=jgi.p|Nanoce1779_2|598072|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_19:104771..105999- (Nannochloropsis oceanica)
ATGACCCACCGGCACCATCAAATGCATGATTCTGGTATATCAACACCCCT
TCAAAGTACTGGTGGGGAGGATGACGACCCAGAGCTGGCCAAGAAAATGC
GACTGTACCCACAAGACTTCTTACTGGTGAAGCCTCAGATCGGCACATTC
GGGTTTGCCTGGGCGCGAGGCGTGGTCAGTCCCTTTGTCAGCAGCAAACG
AGACAAGATGGACAACATTTTTGCAGTCATCGGAAGTTTGTTGACCGGGT
CCGCGGTGGTGATGGACGTGGGTTGTGGGGATGGAGCTTTTTTGCTTGAG
GCCGCTCGATTTGGCTGTCAGTGCTACGGACTCGAGATTGATGCAGTGCT
CGCAGAGCTTGCGCGGGAGAAGGCCAAGGAGCAAAAAAAGAGCAATTTAG
TTCAGATATTTGAGGGGGATTTGTTTGATGTTTTGAGTGATTTGAATGCG
GAAGAAGAGGGGGGGTTTGCGGAGAGGAAGGAAGAGGGCAGTGGGAGAGA
TAGTCACGCCCTGGTGGCGGCCGCCGTAAAAGCAAGCACCGTCTTTTATT
TCTATCTACTTCCCGCAGTACTAGACAAACTTACGCCCTGGCTATTTTCT
CGCTTGGAAAGAGCCAGACCAGGTCACCTGACATACATTTTCAATACATG
GGCACCAGCCTCGGCCGAACTCGAGACGCGGTTCCTGGCCCCGCCGTACG
ATCGGGCAGAGCAGAGCAAGCGTGGCTTCTTTCTCTTTCAATCATGA
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Synonyms
Publications