jgi.p|Nanoce1779_2|598070, mRNA_7272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598070
Unique NamemRNA_7272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1075
Alignment locationscaffold_19:103359..104776 -

Link to JBrowse

Properties
Property NameValue
TranscriptId598156
TrackFilteredModels2
ProteinId598070
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:103359..104776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598070gene_7272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598070mRNA_7272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7272CDS_7272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Nanoce1779_2|598070|organism=Nannochloropsis oceanica|type=mRNA|length=1075bp
ATTGAGGGGACGGAAAGAGGGGCTGCCGGAAGCCGCTTACACAGGCTGCG
TTCAGCCGCGCTGGATGGATGAACGGGAGGCCTCGCATCGCCTGCCGCAT
TTGATGATGCCCTGCTTTCCCTAGTCTTTAGACCATCTAACAACACCGTT
GCCATTCCCACGTCCGTGCCATCATGCCTGTGTATGTATGCCTGAAGGTC
TACAGTTTGATTTGGGGGTTGCGCGGTTGGTTGGGTGGTGGGAGACCGGG
GCAAGGGGAAGAGAAGGAAAGGAGCGAAGGTATACGCAAGGCAAGCACAA
CGCACACAAGCACGTCCACTCACACCCACCATTATCACACTTGTATACAC
AGGGAGTCACCATCCTTGTTGTCCGTAGGAGAGGAAGCAGCTAAGTAGGG
CCTCTATCTTGCCGCACCAGTGCAAAGATGCCCCCCAAGGTCCAACAAAA
GACAAAGGAGCAAAAGCTCGCCGCCGCCATGGCGGGCGGAAAGAGCAAGA
AGAAGAAGTGGTCCAAGGGCAAGATGCGTGAGAAGGTCGCCAACAAGGTG
CTTTTCGACGAGGAGATGTACAACAACCGTCTGTTGACGGAGATCCCCAA
GTCCAAGCTCATCACTCCTTCCTCTCTGGTCGAGCGCCTCAAGATTAATG
GTTCTCTGGCCCGTGCCGCTCTGCGTGAGCTCAAGGAGAAGGGTCTGATT
AAACCCATCTCGGTGCACCACTCCCAGATCATCTACACACGCGCCATCGC
CGCCGCCGAGTAACTTTAAGAGACGAAGACGACGATGAGAGCTTTGTGTA
GATTACATAGGAAAAGAACCGACAAGGGGCGAAAAAGACGAGCTGGATAG
GAACAAATGGAGGGTACGGCAGATTGTGGGGAGCCACCCTTTCTTTTCGG
AACTTTTTCTTTGGCATTGGGAATACGGCCAAGAGACACGTCATCCAAAG
GATGGAGGTGAGGTGGTAATGTGTGTGCCTGAGGGGGGAAGTAGGTTAGG
TTTTCCTCGCTCCTCTAGGCTTAAGGTGCGGGCACCAGACTCAAGAAAGA
ACCAAGAAGAAAGGCAACGAAAGGA
back to top

protein sequence of jgi.p|Nanoce1779_2|598070

>mRNA_7272-protein ID=mRNA_7272-protein|Name=jgi.p|Nanoce1779_2|598070|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNN
RLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQ
IIYTRAIAAAE*
back to top

mRNA from alignment at scaffold_19:103359..104776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Nanoce1779_2|598070|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at scaffold_19:103359..104776- (Nannochloropsis oceanica)
ATTGAGGGGACGGAAAGAGGGGCTGCCGGAAGCCGCTTACACAGGCTGCG
TTCAGCCGCGCTGGATGGATGAACGGGAGGCCTCGCATCGCCTGCCGCAT
TTGATGATGCCCTGCTTTCCCTAGTCTTTAGACCATCTAACAACACCGTT
GCCATTCCCACGTCCGTGCCATCATGCCTGTGTATGTATGCCTGAAGGTC
TACAGTTTGATTTGGGGGTTGCGCGGTTGGTTGGGTGGTGGGAGACCGGG
GCAAGGGGAAGAGAAGGAAAGGAGCGAAGGTATACGCAAGGCAAGCACAA
CGCACACAAGCACGTCCACTCACACCCACCATTATCACACTTGTATACAC
AGGGAGTCACCATCCTTGTTGTCCGTAGGAGAGGAAGCAGCTAAGTAGGG
CCTCTATCTTGCCGCACCAGTGCAAAGATGGTAAGTCACGGGTGGGATGA
AGAGAGCGAGGGAGGGAGGGGAGGGAAAAGAGCAAAGAGCATGCCAGCAA
CGGAGGACTATTAGCTGCCATGAGTGCTTTGTAGTGCCCTGTATACATGT
GTATCAGATAGTGGAGCATGCTCGCCTGTCTAGCCACACAACAAGACGTA
ATGCTCATCCCATCATCTCTTTCCCCCCTCCCTTCCCTCCGTCTCACCAC
AGCCCCCCAAGGTCCAACAAAAGACAAAGGAGCAAAAGCTCGCCGCCGCC
ATGGCGGGCGGAAAGAGCAAGAAGAAGGTTCGTGTACACCTTGAAGCGGG
ACTGGAGTATTGGGAGTGGGGAAGTGTCCTTCTATTCAAAGGGGACACGT
ACTCAATTCTTTTTTCCTCCCTTTCCTCCCCTTCCCCCTCTCGAGCAGAA
GTGGTCCAAGGGCAAGATGCGTGAGAAGGTCGCCAACAAGGTGCTTTTCG
ACGAGGAGATGTACAACAACCGTCTGTTGACGGAGATCCCCAAGTCCAAG
CTCATCACTCCTTCCTCTCTGGTCGAGCGCCTCAAGATTAATGGTTCTCT
GGCCCGTGCCGCTCTGCGTGAGCTCAAGGAGAAGGGTCTGATTAAACCCA
TCTCGGTGCACCACTCCCAGATCATCTACACACGCGCCATCGCCGCCGCC
GAGTAACTTTAAGAGACGAAGACGACGATGAGAGCTTTGTGTAGATTACA
TAGGAAAAGAACCGACAAGGGGCGAAAAAGACGAGCTGGATAGGAACAAA
TGGAGGGTACGGCAGATTGTGGGGAGCCACCCTTTCTTTTCGGAACTTTT
TCTTTGGCATTGGGAATACGGCCAAGAGACACGTCATCCAAAGGATGGAG
GTGAGGTGGTAATGTGTGTGCCTGAGGGGGGAAGTAGGTTAGGTTTTCCT
CGCTCCTCTAGGCTTAAGGTGCGGGCACCAGACTCAAGAAAGAACCAAGA
AGAAAGGCAACGAAAGGA
back to top

Coding sequence (CDS) from alignment at scaffold_19:103359..104776-

>mRNA_7272 ID=mRNA_7272|Name=jgi.p|Nanoce1779_2|598070|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_19:103359..104776- (Nannochloropsis oceanica)
AAGTGGTCCAAGGGCAAGATGCGTGAGAAGGTCGCCAACAAGGTGCTTTT
CGACGAGGAGATGTACAACAACCGTCTGTTGACGGAGATCCCCAAGTCCA
AGCTCATCACTCCTTCCTCTCTGGTCGAGCGCCTCAAGATTAATGGTTCT
CTGGCCCGTGCCGCTCTGCGTGAGCTCAAGGAGAAGGGTCTGATTAAACC
CATCTCGGTGCACCACTCCCAGATCATCTACACACGCGCCATCGCCGCCG
CCGAGTAACCCCCCAAGGTCCAACAAAAGACAAAGGAGCAAAAGCTCGCC
GCCGCCATGGCGGGCGGAAAGAGCAAGAAGAAGATGAAGTGGTCCAAGGG
CAAGATGCGTGAGAAGGTCGCCAACAAGGTGCTTTTCGACGAGGAGATGT
ACAACAACCGTCTGTTGACGGAGATCCCCAAGTCCAAGCTCATCACTCCT
TCCTCTCTGGTCGAGCGCCTCAAGATTAATGGTTCTCTGGCCCGTGCCGC
TCTGCGTGAGCTCAAGGAGAAGGGTCTGATTAAACCCATCTCGGTGCACC
ACTCCCAGATCATCTACACACGCGCCATCGCCGCCGCCGAGTAACCCCCC
AAGGTCCAACAAAAGACAAAGGAGCAAAAGCTCGCCGCCGCCATGGCGGG
CGGAAAGAGCAAGAAGAAGATGAAGTGGTCCAAGGGCAAGATGCGTGAGA
AGGTCGCCAACAAGGTGCTTTTCGACGAGGAGATGTACAACAACCGTCTG
TTGACGGAGATCCCCAAGTCCAAGCTCATCACTCCTTCCTCTCTGGTCGA
GCGCCTCAAGATTAATGGTTCTCTGGCCCGTGCCGCTCTGCGTGAGCTCA
AGGAGAAGGGTCTGATTAAACCCATCTCGGTGCACCACTCCCAGATCATC
TACACACGCGCCATCGCCGCCGCCGAGTAACCCCCCAAGGTCCAACAAAA
GACAAAGGAGCAAAAGCTCGCCGCCGCCATGGCGGGCGGAAAGAGCAAGA
AGAAGATG
back to top
Synonyms
Publications