jgi.p|Nanoce1779_2|558379, mRNA_7271 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|558379
Unique NamemRNA_7271
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2373
Alignment locationscaffold_19:102061..104776 -

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Properties
Property NameValue
TranscriptId558465
TrackFilteredModels2
ProteinId558379
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:102061..104776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558379gene_7271Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7271CDS_7271Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|558379mRNA_7271-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7271 ID=mRNA_7271|Name=jgi.p|Nanoce1779_2|558379|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
ATTGAGGGGACGGAAAGAGGGGCTGCCGGAAGCCGCTTACACAGGCTGCG
TTCAGCCGCGCTGGATGGATGAACGGGAGGCCTCGCATCGCCTGCCGCAT
TTGATGATGCCCTGCTTTCCCTAGTCTTTAGACCATCTAACAACACCGTT
GCCATTCCCACGTCCGTGCCATCATGCCTGTGTATGTATGCCTGAAGGTC
TACAGTTTGATTTGGGGGTTGCGCGGTTGGTTGGGTGGTGGGAGACCGGG
GCAAGGGGAAGAGAAGGAAAGGAGCGAAGGTATACGCAAGGCAAGCACAA
CGCACACAAGCACGTCCACTCACACCCACCATTATCACACTTGTATACAC
AGGGAGTCACCATCCTTGTTGTCCGTAGGAGAGGAAGCAGCTAAGTAGGG
CCTCTATCTTGCCGCACCAGTGCAAAGATGCCCCCCAAGGTCCAACAAAA
GACAAAGGAGCAAAAGCTCGCCGCCGCCATGGCGGGCGGAAAGAGCAAGA
AGAAGAAGTGGTCCAAGGGCAAGATGCGTGAGAAGGTCGCCAACAAGGTG
CTTTTCGACGAGGAGATGTACAACAACCGTCTGTTGACGGAGATCCCCAA
GTCCAAGCTCATCACTCCTTCCTCTCTGGTCGAGCGCCTCAAGATTAATG
GTTCTCTGGCCCGTGCCGCTCTGCGTGAGCTCAAGGAGAAGGGTCTGATT
AAACCCATCTCGGTGCACCACTCCCAGATCATCTACACACGCGCCATCGC
CGCCGCCGAGTAACTTTAAGAGACGAAGACGACGATGAGAGCTTTGTGTA
GATTACATAGGAAAAGAACCGACAAGGGGCGAAAAAGACGAGCTGGATAG
GAACAAATGGAGGGTACGGCAGATTGTGGGGAGCCACCCTTTCTTTTCGG
AACTTTTTCTTTGGCATTGGGAATACGGCCAAGAGACACGTCATCCAAAG
GATGGAGGTGAGGTGGTAATGTGTGTGCCTGAGGGGGGAAGTAGGTTAGG
TTTTCCTCGCTCCTCTAGGCTTAAGGTGCGGGCACCAGACTCAAGAAAGA
ACCAAGAAGAAAGGCAACGAAAGGACTAGATTGACCTTTGTAGGGGATTG
CTTGTCGTTATTTTTTTTTGTCCGCTGGAATATATATTTCAAATCGTTGT
GATGGAAAGTAGGTTGCAGCACAAGAGGTGGGGGGTCCAACGGCAACACG
CCGCCCCTTCTTGTTCCACGCACGTCTCGGCTCCTCTTTGCCCACCTCTT
TTGATGCTCACGACACACTCCAACAAACACGTCTCTTAGTTGCATGGCTT
TGGCATACCACTGAACTCCTCTCTTCATTCTATCCACAGTGCCACAGGTC
TTCTCGGCCATGCACCACCAGCCTTGAGCCGCGTCCTTCCGTGCCAGCAC
CATCATCAGCAACAACATTAACGCAATGGCCTCCTCCGGCATCTACTTCG
ATCTCCCAGGCTTTGAGCTCCTGCGGCCTGTCGCTTCAACTTCTTCCTCC
TCCTCTCACTTTTCTGCCAGTGCCAGTAATGAGCCTCCTATGCTCCCCTC
GTCGTTCTCCACATCCACTTCCATGTCATTACCAACGATTAGCAGCGTGG
AGCAGGCCGTCTCCCAGGACCGGCGGCAAAAGCAACGCCGCTTGGAAAAG
GATCGAAGATTTGCCTTTTCGACAAGCACGAAGATGACGAGCAGGGACGA
GGAGGAGGAGGAGGAGGATGCTGGGGTTAGAGGTGGAGTGCTGTCACTAT
CGTCGCTGCGGCAAGAATTGGAGTCGCCCTGGAATTGTGTCAAGTGCACA
TGCCTGAACGCGCCGCAGAACCGAAGCTGCGAGGCTTGTGGTGGGTTGAA
TCAATGGCGGGTCCGCTTGCATGAGAAGAACGCGGCGGCGACGAGGGCGC
ATCGACAGCAAGAGCGACAGGCACAGGAGCAGCATCAAGAGAGATTCAAG
GATTTGATGGAATTGGAAGAGGAAGAGGAAGAGAACGACGACGACGACGA
CGATGTAGTGGTGATAGGGGATGAGGGAAAATGGAATAAAGTGTCATCTT
CCTCTACATCCCCTTCCTTGATCTCAGCAGCAGCAGCAGCAGCAACAGCA
GCTGCAACAGCAGGAGCGCCGCTAGCAGTTTTACTTCGAGCAAACCCCGT
GCTAATTCACGGCGGTGGACCCTTCCGTTTACTGCCCTCCGACTTGCATT
TGCATTGCCTAGGCTTTTTACACGACCATTTCGAATACGTTCGATTGAGA
ACAGTGAGTAAGGCATGGGCGGGCATGGCCGAGCATGAGAGTCTCTGGCG
ACCCCTAGTCGAGAGGGATTGTGGAGAATTGATGACAAGAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|558379

>mRNA_7271-protein ID=mRNA_7271-protein|Name=jgi.p|Nanoce1779_2|558379|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MASSGIYFDLPGFELLRPVASTSSSSSHFSASASNEPPMLPSSFSTSTSM
SLPTISSVEQAVSQDRRQKQRRLEKDRRFAFSTSTKMTSRDEEEEEEDAG
VRGGVLSLSSLRQELESPWNCVKCTCLNAPQNRSCEACGGLNQWRVRLHE
KNAAATRAHRQQERQAQEQHQERFKDLMELEEEEEENDDDDDDVVVIGDE
GKWNKVSSSSTSPSLISAAAAAATAAATAGAPLAVLLRANPVLIHGGGPF
RLLPSDLHLHCLGFLHDHFEYVRLRTVSKAWAGMAEHESLWRPLVERDCG
ELMTRAAAAAAAAAAA
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mRNA from alignment at scaffold_19:102061..104776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7271 ID=mRNA_7271|Name=jgi.p|Nanoce1779_2|558379|organism=Nannochloropsis oceanica|type=mRNA|length=2716bp|location=Sequence derived from alignment at scaffold_19:102061..104776- (Nannochloropsis oceanica)
ATTGAGGGGACGGAAAGAGGGGCTGCCGGAAGCCGCTTACACAGGCTGCG
TTCAGCCGCGCTGGATGGATGAACGGGAGGCCTCGCATCGCCTGCCGCAT
TTGATGATGCCCTGCTTTCCCTAGTCTTTAGACCATCTAACAACACCGTT
GCCATTCCCACGTCCGTGCCATCATGCCTGTGTATGTATGCCTGAAGGTC
TACAGTTTGATTTGGGGGTTGCGCGGTTGGTTGGGTGGTGGGAGACCGGG
GCAAGGGGAAGAGAAGGAAAGGAGCGAAGGTATACGCAAGGCAAGCACAA
CGCACACAAGCACGTCCACTCACACCCACCATTATCACACTTGTATACAC
AGGGAGTCACCATCCTTGTTGTCCGTAGGAGAGGAAGCAGCTAAGTAGGG
CCTCTATCTTGCCGCACCAGTGCAAAGATGGTAAGTCACGGGTGGGATGA
AGAGAGCGAGGGAGGGAGGGGAGGGAAAAGAGCAAAGAGCATGCCAGCAA
CGGAGGACTATTAGCTGCCATGAGTGCTTTGTAGTGCCCTGTATACATGT
GTATCAGATAGTGGAGCATGCTCGCCTGTCTAGCCACACAACAAGACGTA
ATGCTCATCCCATCATCTCTTTCCCCCCTCCCTTCCCTCCGTCTCACCAC
AGCCCCCCAAGGTCCAACAAAAGACAAAGGAGCAAAAGCTCGCCGCCGCC
ATGGCGGGCGGAAAGAGCAAGAAGAAGGTTCGTGTACACCTTGAAGCGGG
ACTGGAGTATTGGGAGTGGGGAAGTGTCCTTCTATTCAAAGGGGACACGT
ACTCAATTCTTTTTTCCTCCCTTTCCTCCCCTTCCCCCTCTCGAGCAGAA
GTGGTCCAAGGGCAAGATGCGTGAGAAGGTCGCCAACAAGGTGCTTTTCG
ACGAGGAGATGTACAACAACCGTCTGTTGACGGAGATCCCCAAGTCCAAG
CTCATCACTCCTTCCTCTCTGGTCGAGCGCCTCAAGATTAATGGTTCTCT
GGCCCGTGCCGCTCTGCGTGAGCTCAAGGAGAAGGGTCTGATTAAACCCA
TCTCGGTGCACCACTCCCAGATCATCTACACACGCGCCATCGCCGCCGCC
GAGTAACTTTAAGAGACGAAGACGACGATGAGAGCTTTGTGTAGATTACA
TAGGAAAAGAACCGACAAGGGGCGAAAAAGACGAGCTGGATAGGAACAAA
TGGAGGGTACGGCAGATTGTGGGGAGCCACCCTTTCTTTTCGGAACTTTT
TCTTTGGCATTGGGAATACGGCCAAGAGACACGTCATCCAAAGGATGGAG
GTGAGGTGGTAATGTGTGTGCCTGAGGGGGGAAGTAGGTTAGGTTTTCCT
CGCTCCTCTAGGCTTAAGGTGCGGGCACCAGACTCAAGAAAGAACCAAGA
AGAAAGGCAACGAAAGGACTAGATTGACCTTTGTAGGGGATTGCTTGTCG
TTATTTTTTTTTGTCCGCTGGAATATATATTTCAAATCGTTGTGATGGAA
AGTAGGTTGCAGCACAAGAGGTGGGGGGTCCAACGGCAACACGCCGCCCC
TTCTTGTTCCACGCACGTCTCGGCTCCTCTTTGCCCACCTCTTTTGATGC
TCACGACACACTCCAACAAACACGTCTCTTAGTTGCATGGCTTTGGCATA
CCACTGAACTCCTCTCTTCATTCTATCCACAGTGCCACAGGTCTTCTCGG
CCATGCACCACCAGCCTTGAGCCGCGTCCTTCCGTGCCAGCACCATCATC
AGCAACAACATTAACGCAATGGCCTCCTCCGGCATCTACTTCGATCTCCC
AGGCTTTGAGCTCCTGCGGCCTGTCGCTTCAACTTCTTCCTCCTCCTCTC
ACTTTTCTGCCAGTGCCAGTAATGAGCCTCCTATGCTCCCCTCGTCGTTC
TCCACATCCACTTCCATGTCATTACCAACGATTAGCAGCGTGGAGCAGGC
CGTCTCCCAGGACCGGCGGCAAAAGCAACGCCGCTTGGAAAAGGATCGAA
GATTTGCCTTTTCGACAAGCACGAAGATGACGAGCAGGGACGAGGAGGAG
GAGGAGGAGGATGCTGGGGTTAGAGGTGGAGTGCTGTCACTATCGTCGCT
GCGGCAAGAATTGGAGTCGCCCTGGAATTGTGTCAAGTGCACATGCCTGA
ACGCGCCGCAGAACCGAAGCTGCGAGGCTTGTGGTGGGTTGAATCAATGG
CGGGTCCGCTTGCATGAGAAGAACGCGGCGGCGACGAGGGCGCATCGACA
GCAAGAGCGACAGGCACAGGAGCAGCATCAAGAGAGATTCAAGGATTTGA
TGGAATTGGAAGAGGAAGAGGAAGAGAACGACGACGACGACGACGATGTA
GTGGTGATAGGGGATGAGGGAAAATGGAATAAAGTGTCATCTTCCTCTAC
ATCCCCTTCCTTGATCTCAGCAGCAGCAGCAGCAGCAACAGCAGCTGCAA
CAGCAGGAGCGCCGCTAGCAGTTTTACTTCGAGCAAACCCCGTGCTAATT
CACGGCGGTGGACCCTTCCGTTTACTGCCCTCCGACTTGCATTTGCATTG
CCTAGGCTTTTTACACGACCATTTCGAATACGTTCGATTGAGAACAGTGA
GTAAGGCATGGGCGGGCATGGCCGAGCATGAGAGTCTCTGGCGACCCCTA
GTCGAGAGGGATTGTGGAGAATTGATGACAAGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at scaffold_19:102061..104776-

>mRNA_7271 ID=mRNA_7271|Name=jgi.p|Nanoce1779_2|558379|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_19:102061..104776- (Nannochloropsis oceanica)
ATGGCCTCCTCCGGCATCTACTTCGATCTCCCAGGCTTTGAGCTCCTGCG
GCCTGTCGCTTCAACTTCTTCCTCCTCCTCTCACTTTTCTGCCAGTGCCA
GTAATGAGCCTCCTATGCTCCCCTCGTCGTTCTCCACATCCACTTCCATG
TCATTACCAACGATTAGCAGCGTGGAGCAGGCCGTCTCCCAGGACCGGCG
GCAAAAGCAACGCCGCTTGGAAAAGGATCGAAGATTTGCCTTTTCGACAA
GCACGAAGATGACGAGCAGGGACGAGGAGGAGGAGGAGGAGGATGCTGGG
GTTAGAGGTGGAGTGCTGTCACTATCGTCGCTGCGGCAAGAATTGGAGTC
GCCCTGGAATTGTGTCAAGTGCACATGCCTGAACGCGCCGCAGAACCGAA
GCTGCGAGGCTTGTGGTGGGTTGAATCAATGGCGGGTCCGCTTGCATGAG
AAGAACGCGGCGGCGACGAGGGCGCATCGACAGCAAGAGCGACAGGCACA
GGAGCAGCATCAAGAGAGATTCAAGGATTTGATGGAATTGGAAGAGGAAG
AGGAAGAGAACGACGACGACGACGACGATGTAGTGGTGATAGGGGATGAG
GGAAAATGGAATAAAGTGTCATCTTCCTCTACATCCCCTTCCTTGATCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCTGCAACAGCAGGAGCGCCGCTAG
CAGTTTTACTTCGAGCAAACCCCGTGCTAATTCACGGCGGTGGACCCTTC
CGTTTACTGCCCTCCGACTTGCATTTGCATTGCCTAGGCTTTTTACACGA
CCATTTCGAATACGTTCGATTGAGAACAGTGAGTAAGGCATGGGCGGGCA
TGGCCGAGCATGAGAGTCTCTGGCGACCCCTAGTCGAGAGGGATTGTGGA
GAATTGATGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
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Synonyms
Publications