jgi.p|Nanoce1779_2|567758, mRNA_7270 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567758
Unique NamemRNA_7270
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1380
Alignment locationscaffold_19:100006..101385 -

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Properties
Property NameValue
TranscriptId567844
TrackFilteredModels2
ProteinId567758
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:100006..101385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567758gene_7270Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7270CDS_7270Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567758mRNA_7270-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7270 ID=mRNA_7270|Name=jgi.p|Nanoce1779_2|567758|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGGCCGGCACCAGCAAGAGCAATGCCTGGGAGGTGGCGAATAAGCAAAC
GGGAGACTTCTATTACGTGTATAAAGTGCAGGCATTGGACAGGATGCTGG
GAGCGAAATGGGACAGTCTGCATAGGGGGTGGGAGTGGATGAGTAACTCC
TGTCGGGTGGCCTTGCGGACGCGGCTATACGCGACAAGGGAAGAGATTTG
TCAGAGGGATGATAGTTTGATCCCAATCACGAGCAGCTTCCAGCGGTGTG
TGAATAAACTGACACAGAGGGACTGGCCGTTGCTGTGGACGTGCATGCGG
GCGGAACTTTTTCTTCAAGCCGAGGGATTGAGGAGGGATGTGGTGCGGCA
CATGCGAGGAAGGGAGGCGCGTTTAGAGGAGAAAGGGGTGGTGGGTGGGT
ATCGATATCTCCTACAGGATCTATTGTGGTGTTTCTCGGTGTACAGCGCC
TGGGTCTTTGAAGTGTCGTCGTTTTTCATGAAGATGAACGATCAAATCTC
GGGAGAGAGGTTCCGGACGACGACGATATGTGGGGAGGGAGAGAGGGAAG
GAGGGGGGGAGAACACATTGTACTTGTCGGAGGTGGCATTGGTGGCTTTT
CGTGAAAATGTTTTGATGCATTTTATGATCCGGACGCCGGTGATGCGGGC
AGTGGAGGGAGAAAGGGAAGGAGAGGGGATGAGATTGGCCGAGTTTTTTA
AGGAGGGCGGCGACGATGGTGGGGGTGGTGGTGGTCGTAGTGGTGCAGAG
GAGGAAGAGGACATAGGAAAGGAAGGGGGAAAGGGGGGAAAAGGAGGGTG
GAAGAGGAAGAGGGAGGGAAGGGGGATGTCGGGCGCGCCTCGGGCGAGTG
CCCAGCAGCAAGAGCTAGTGGAGTCGGAGGAGGGGGAGGTGGACGACCAA
GTTCTTGCGACACGCGTACGATCACATTACGCCACTGGTACCACCACCAC
TGCCACTGCTGCTGCTGCTGGTGATGATGATGATGATGATTGTCGACGGG
GGTCACACCGAAGGAGGATCACCGCGAACCTAGCGGAGGAGCTGATCATG
TTGGGTAATATGGTCGAAGAATTAGACGTGCTGGAACAGGGGGGTGGGAA
GCAGTCTGAGGCGTTTCGACAGAGGCTGCTGAAACCGTTGCGGGCCACGC
TGGCGGAACTACGCGTGGATGGGCTCGGAGGAGAGGGAGGAGGTACGGGT
GGAGAGGAGCTTGGGTTGAGGGAAGAGGAGGACATGGAGGGGCCGGAAGT
GATGATGACGTTGAACGAAAATGGAGACCAGTTAAGCAGAGCGCGGGATG
GGTTTCGTCGACTTCGTCGAGGGCAGGGTTTATGTGATGATAGGGGTGGG
AGGGGAAGGAAGCGGATGCGTTTGGTGTAA
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protein sequence of jgi.p|Nanoce1779_2|567758

>mRNA_7270-protein ID=mRNA_7270-protein|Name=jgi.p|Nanoce1779_2|567758|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MAGTSKSNAWEVANKQTGDFYYVYKVQALDRMLGAKWDSLHRGWEWMSNS
CRVALRTRLYATREEICQRDDSLIPITSSFQRCVNKLTQRDWPLLWTCMR
AELFLQAEGLRRDVVRHMRGREARLEEKGVVGGYRYLLQDLLWCFSVYSA
WVFEVSSFFMKMNDQISGERFRTTTICGEGEREGGGENTLYLSEVALVAF
RENVLMHFMIRTPVMRAVEGEREGEGMRLAEFFKEGGDDGGGGGGRSGAE
EEEDIGKEGGKGGKGGWKRKREGRGMSGAPRASAQQQELVESEEGEVDDQ
VLATRVRSHYATGTTTTATAAAAGDDDDDDCRRGSHRRRITANLAEELIM
LGNMVEELDVLEQGGGKQSEAFRQRLLKPLRATLAELRVDGLGGEGGGTG
GEELGLREEEDMEGPEVMMTLNENGDQLSRARDGFRRLRRGQGLCDDRGG
RGRKRMRLV*
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mRNA from alignment at scaffold_19:100006..101385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7270 ID=mRNA_7270|Name=jgi.p|Nanoce1779_2|567758|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp|location=Sequence derived from alignment at scaffold_19:100006..101385- (Nannochloropsis oceanica)
ATGGCCGGCACCAGCAAGAGCAATGCCTGGGAGGTGGCGAATAAGCAAAC
GGGAGACTTCTATTACGTGTATAAAGTGCAGGCATTGGACAGGATGCTGG
GAGCGAAATGGGACAGTCTGCATAGGGGGTGGGAGTGGATGAGTAACTCC
TGTCGGGTGGCCTTGCGGACGCGGCTATACGCGACAAGGGAAGAGATTTG
TCAGAGGGATGATAGTTTGATCCCAATCACGAGCAGCTTCCAGCGGTGTG
TGAATAAACTGACACAGAGGGACTGGCCGTTGCTGTGGACGTGCATGCGG
GCGGAACTTTTTCTTCAAGCCGAGGGATTGAGGAGGGATGTGGTGCGGCA
CATGCGAGGAAGGGAGGCGCGTTTAGAGGAGAAAGGGGTGGTGGGTGGGT
ATCGATATCTCCTACAGGATCTATTGTGGTGTTTCTCGGTGTACAGCGCC
TGGGTCTTTGAAGTGTCGTCGTTTTTCATGAAGATGAACGATCAAATCTC
GGGAGAGAGGTTCCGGACGACGACGATATGTGGGGAGGGAGAGAGGGAAG
GAGGGGGGGAGAACACATTGTACTTGTCGGAGGTGGCATTGGTGGCTTTT
CGTGAAAATGTTTTGATGCATTTTATGATCCGGACGCCGGTGATGCGGGC
AGTGGAGGGAGAAAGGGAAGGAGAGGGGATGAGATTGGCCGAGTTTTTTA
AGGAGGGCGGCGACGATGGTGGGGGTGGTGGTGGTCGTAGTGGTGCAGAG
GAGGAAGAGGACATAGGAAAGGAAGGGGGAAAGGGGGGAAAAGGAGGGTG
GAAGAGGAAGAGGGAGGGAAGGGGGATGTCGGGCGCGCCTCGGGCGAGTG
CCCAGCAGCAAGAGCTAGTGGAGTCGGAGGAGGGGGAGGTGGACGACCAA
GTTCTTGCGACACGCGTACGATCACATTACGCCACTGGTACCACCACCAC
TGCCACTGCTGCTGCTGCTGGTGATGATGATGATGATGATTGTCGACGGG
GGTCACACCGAAGGAGGATCACCGCGAACCTAGCGGAGGAGCTGATCATG
TTGGGTAATATGGTCGAAGAATTAGACGTGCTGGAACAGGGGGGTGGGAA
GCAGTCTGAGGCGTTTCGACAGAGGCTGCTGAAACCGTTGCGGGCCACGC
TGGCGGAACTACGCGTGGATGGGCTCGGAGGAGAGGGAGGAGGTACGGGT
GGAGAGGAGCTTGGGTTGAGGGAAGAGGAGGACATGGAGGGGCCGGAAGT
GATGATGACGTTGAACGAAAATGGAGACCAGTTAAGCAGAGCGCGGGATG
GGTTTCGTCGACTTCGTCGAGGGCAGGGTTTATGTGATGATAGGGGTGGG
AGGGGAAGGAAGCGGATGCGTTTGGTGTAA
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Coding sequence (CDS) from alignment at scaffold_19:100006..101385-

>mRNA_7270 ID=mRNA_7270|Name=jgi.p|Nanoce1779_2|567758|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_19:100006..101385- (Nannochloropsis oceanica)
ATGGCCGGCACCAGCAAGAGCAATGCCTGGGAGGTGGCGAATAAGCAAAC
GGGAGACTTCTATTACGTGTATAAAGTGCAGGCATTGGACAGGATGCTGG
GAGCGAAATGGGACAGTCTGCATAGGGGGTGGGAGTGGATGAGTAACTCC
TGTCGGGTGGCCTTGCGGACGCGGCTATACGCGACAAGGGAAGAGATTTG
TCAGAGGGATGATAGTTTGATCCCAATCACGAGCAGCTTCCAGCGGTGTG
TGAATAAACTGACACAGAGGGACTGGCCGTTGCTGTGGACGTGCATGCGG
GCGGAACTTTTTCTTCAAGCCGAGGGATTGAGGAGGGATGTGGTGCGGCA
CATGCGAGGAAGGGAGGCGCGTTTAGAGGAGAAAGGGGTGGTGGGTGGGT
ATCGATATCTCCTACAGGATCTATTGTGGTGTTTCTCGGTGTACAGCGCC
TGGGTCTTTGAAGTGTCGTCGTTTTTCATGAAGATGAACGATCAAATCTC
GGGAGAGAGGTTCCGGACGACGACGATATGTGGGGAGGGAGAGAGGGAAG
GAGGGGGGGAGAACACATTGTACTTGTCGGAGGTGGCATTGGTGGCTTTT
CGTGAAAATGTTTTGATGCATTTTATGATCCGGACGCCGGTGATGCGGGC
AGTGGAGGGAGAAAGGGAAGGAGAGGGGATGAGATTGGCCGAGTTTTTTA
AGGAGGGCGGCGACGATGGTGGGGGTGGTGGTGGTCGTAGTGGTGCAGAG
GAGGAAGAGGACATAGGAAAGGAAGGGGGAAAGGGGGGAAAAGGAGGGTG
GAAGAGGAAGAGGGAGGGAAGGGGGATGTCGGGCGCGCCTCGGGCGAGTG
CCCAGCAGCAAGAGCTAGTGGAGTCGGAGGAGGGGGAGGTGGACGACCAA
GTTCTTGCGACACGCGTACGATCACATTACGCCACTGGTACCACCACCAC
TGCCACTGCTGCTGCTGCTGGTGATGATGATGATGATGATTGTCGACGGG
GGTCACACCGAAGGAGGATCACCGCGAACCTAGCGGAGGAGCTGATCATG
TTGGGTAATATGGTCGAAGAATTAGACGTGCTGGAACAGGGGGGTGGGAA
GCAGTCTGAGGCGTTTCGACAGAGGCTGCTGAAACCGTTGCGGGCCACGC
TGGCGGAACTACGCGTGGATGGGCTCGGAGGAGAGGGAGGAGGTACGGGT
GGAGAGGAGCTTGGGTTGAGGGAAGAGGAGGACATGGAGGGGCCGGAAGT
GATGATGACGTTGAACGAAAATGGAGACCAGTTAAGCAGAGCGCGGGATG
GGTTTCGTCGACTTCGTCGAGGGCAGGGTTTATGTGATGATAGGGGTGGG
AGGGGAAGGAAGCGGATGCGTTTGGTGTAA
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Synonyms
Publications