jgi.p|Nanoce1779_2|598057, mRNA_7269 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|598057
Unique Name	mRNA_7269
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1249
Alignment location	scaffold_19:98224..99979 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	598143
Track	FilteredModels2
ProteinId	598057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:98224..99979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598057	gene_7269	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|598057	mRNA_7269-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7269	CDS_7269	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:98224..99979+
coding sequence from alignment at scaffold_19:98224..99979+

mRNA sequence

>mRNA_7269 ID=mRNA_7269|Name=jgi.p|Nanoce1779_2|598057|organism=Nannochloropsis oceanica|type=mRNA|length=1249bp
ACAGACCATGCATCTACCCTTATGCCGAGTCCTGGCGCTCCTGGTCATCA
CCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCCAGGCCCGTTGCAG
CATGACCGACTGCAGCAGGGACTAAGGCAATGTACGCCCTCGACAGCAGC
AAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTTGCGGCTGAGACCG
GCGTATCAAAAGCGGCGGATGCCGAGAAATTTGACAAGCTCATTACCGAA
ATGCTGGCGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGCTGACTC
GTTCGACTATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGACCTCCT
CAGACGAAACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAAT
TTTGCCATGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACGGGGGAT
CTTGAAGAGTGGGGACCTGAAGGTCATGGAAGCCAAAATGCGGAAACACC
TCAAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAACATGAAC
ATCCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACGCCGCTGC
CAATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGAGACAAAC
GCCTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGCGAAGGAC
GAGGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCGCCAACCC
TCCCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAGGAGGAGC
AGGAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCTCGCACAG
TCATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGGAGCTGGA
GGCGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCAGAGATCGACGTGG
TGGTAAAGGCTTGTGCGTGAGATTTACGATGGGGTGTAATCGGTAGAGGG
GGTGAAACAGATTTCAGAAATTACAATTAAAGGATCAATCAATCAATCAA
TCAATCATAAAAAGAAAAAAAACGTAAAAATGGCTATGGCAACAGCCACA
GCTACAGCAGCAACAGCAACAACGATAGTAACAGCACCAGTACCAGTACC
CGCACTAACACTAGCTACAGCTACAGCTACAGCTACAGCTACAGCTTTAG
CTACAGCAGCAAAGTGCTTTTGCGAGCTTAACATCACAGAAATTAGCGA

protein sequence of jgi.p|Nanoce1779_2|598057

>mRNA_7269-protein ID=mRNA_7269-protein|Name=jgi.p|Nanoce1779_2|598057|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MHLPLCRVLALLVITPSFYAFLFSAAPGPLQHDRLQQGLRQCTPSTAASP
GARVPSTILLAAETGVSKAADAEKFDKLITEMLASSDLPTLALEKADSFD
YHFMSHLMQRLQTSSDETEIAALNQVGEAVNFAMQQRLAKADFILRGILK
SGDLKVMEAKMRKHLKANELDMAFDVILNMNIQQARADDTDGGNDAAANI
LQHLATMLSEERDKRLSPPTRLLRMLLRAKDEAERQGILLEKLVLANPPK
RPPVLNEETGEEEEQEPLWGVADTQPEELAQSLKDFLEEIKAFEEELEAD
VVERARNLQAEIDVVVKACA*

mRNA from alignment at scaffold_19:98224..99979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7269 ID=mRNA_7269|Name=jgi.p|Nanoce1779_2|598057|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at scaffold_19:98224..99979+ (Nannochloropsis oceanica)
ACAGACCATGCATCTACCCTTATGCCGAGTCCTGGCGCTCCTGGTCATCA
CCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCCAGGCCCGTTGCAG
CATGACCGACTGCAGCAGGGACTAAGGCAATGTACGCCCTCGACAGCAGC
AAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTTGCGGCTGAGACCG
GCGTATCAAAAGCGGCGGATGCCGAGAAGTAAGCCGGATACGAGGGGAGG
GAGGAAGGGATTATTGCAATTCTCATCCCCGGGAGGGAGTTGAAGTATCC
TTCATGCATGTGCTCGACATACACCCACCAACCCCGTATTCGTCATCCCC
CCTCCCTTTCTCTCTACATCAGCGTTTGACCGCCTTGTCTCCTCGGGCCG
TTACTCTTTAGCTGCGGAACAAGCCGATGACCATTACCTCATGAGTCTCC
CTCCCCCCCTCCTCGCCCTACCTCCCTCCCTATCTCCCTCTCTCCTCCCT
TTCTTCCCCAAAGATTTGACAAGCTCATTACCGAAATGCTGGCGTCATCA
GATCTCCCTACACTGGCCCTTGAGAAAGCTGACTCGTTCGACTATCACTT
TATGAGCCATCTCATGCAGCGTCTGCAGACCTCCTCAGACGAAACCGAGA
TTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAATTTTGCCATGCAGCAG
AGACTGGCCAAGGCTGATTTTATTCTACGGGGGATCTTGAAGAGTGGGGA
CCTGAAGGTAGGGAGGTAGGGAGGGAGGAGGGGGCATGGAGTCGTGTGTG
TGTGTGTGTGGGTGTGCGGGTGTGAGTTTGTGGGTGTGTGTGTGTGTGTT
TGTGTGTGTGTGTGGGTGGGTGGGTGGGTTGGTGAATTATCCCCCCAAAG
TGATTCATTTTGATGTCTTCGACCCTCTTTTCCTTCTCCTCTCCCTCTTC
CCCTCTCCTTCTTCCCTGACCCATTTTAGGTCATGGAAGCCAAAATGCGG
AAACACCTCAAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAA
CATGAACATCCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACG
CCGCTGCCAATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGA
GACAAACGCCTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGC
GAAGGACGAGGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCG
CCAACCCTCCCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAG
GAGGAGCAGGAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCT
CGCACAGTCATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGG
AGCTGGAGGCGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCAGAGATC
GACGTGGTGGTAAAGGCTTGTGCGTGAGATTTACGATGGGGTGTAATCGG
TAGAGGGGGTGAAACAGATTTCAGAAATTACAATTAAAGGATCAATCAAT
CAATCAATCAATCATAAAAAGAAAAAAAACGTAAAAATGGCTATGGCAAC
AGCCACAGCTACAGCAGCAACAGCAACAACGATAGTAACAGCACCAGTAC
CAGTACCCGCACTAACACTAGCTACAGCTACAGCTACAGCTACAGCTACA
GCTTTAGCTACAGCAGCAAAGTGCTTTTGCGAGCTTAACATCACAGAAAT
TAGCGA

Coding sequence (CDS) from alignment at scaffold_19:98224..99979+

>mRNA_7269 ID=mRNA_7269|Name=jgi.p|Nanoce1779_2|598057|organism=Nannochloropsis oceanica|type=CDS|length=2889bp|location=Sequence derived from alignment at scaffold_19:98224..99979+ (Nannochloropsis oceanica)
ATGCATCTACCCTTATGCCGAGTCCTGGCGCTCCTGGTCATCACCCCTAG
CTTCTATGCTTTCCTCTTCTCCGCCGCTCCAGGCCCGTTGCAGCATGACC
GACTGCAGCAGGGACTAAGGCAATGTACGCCCTCGACAGCAGCAAGCCCT
GGAGCCCGTGTCCCGTCCACAATTTTGCTTGCGGCTGAGACCGGCGTATC
AAAAGCGGCGGATGCCGAGAAATTTGACAAGCTCATTACCGAAATGCTGG
CGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGCTGACTCGTTCGAC
TATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGACCTCCTCAGACGA
AACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCGGTGAATTTTGCCA
TGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACGGGGGATCTTGAAG
AGTGGGGACCTGAAGGTCATGGAAGCCAAAATGCGGAAACACCTCAAAGC
TAACGAACTGGACATGGCCTTCGATGTCATCCTCAACATGAACATCCAAC
AAGCCCGGGCCGACGACACCGATGGAGGGAACGACGCCGCTGCCAATATT
TTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGAGACAAACGCCTCTC
CCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGCGAAGGACGAGGCGG
AACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCGCCAACCCTCCCAAG
CGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAGGAGGAGCAGGAACC
TTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCTCGCACAGTCATTGA
AAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGGAGCTGGAGGCGGAC
GTGGTCGAGAGAGCAAGGAACCTTCAGGCAGAGATCGACGTGGTGGTAAA
GGCTTGTGCGTGAATGCATCTACCCTTATGCCGAGTCCTGGCGCTCCTGG
TCATCACCCCTAGCTTCTATGCTTTCCTCTTCTCCGCCGCTCCAGGCCCG
TTGCAGCATGACCGACTGCAGCAGGGACTAAGGCAATGTACGCCCTCGAC
AGCAGCAAGCCCTGGAGCCCGTGTCCCGTCCACAATTTTGCTTGCGGCTG
AGACCGGCGTATCAAAAGCGGCGGATGCCGAGAAATTTGACAAGCTCATT
ACCGAAATGCTGGCGTCATCAGATCTCCCTACACTGGCCCTTGAGAAAGC
TGACTCGTTCGACTATCACTTTATGAGCCATCTCATGCAGCGTCTGCAGA
CCTCCTCAGACGAAACCGAGATTGCCGCCTTGAACCAAGTAGGGGAGGCG
GTGAATTTTGCCATGCAGCAGAGACTGGCCAAGGCTGATTTTATTCTACG
GGGGATCTTGAAGAGTGGGGACCTGAAGGTCATGGAAGCCAAAATGCGGA
AACACCTCAAAGCTAACGAACTGGACATGGCCTTCGATGTCATCCTCAAC
ATGAACATCCAACAAGCCCGGGCCGACGACACCGATGGAGGGAACGACGC
CGCTGCCAATATTTTGCAGCATCTTGCCACCATGCTGAGTGAAGAACGAG
ACAAACGCCTCTCCCCCCCAACCCGCCTCCTCCGCATGCTCCTCCGTGCG
AAGGACGAGGCGGAACGGCAGGGGATCCTGCTCGAGAAGCTCGTCCTCGC
CAACCCTCCCAAGCGCCCGCCGGTTCTCAACGAGGAAACGGGGGAGGAGG
AGGAGCAGGAACCTTTGTGGGGCGTGGCAGACACCCAACCAGAGGAGCTC
GCACAGTCATTGAAAGATTTTTTGGAGGAAATTAAGGCGTTCGAGGAGGA
GCTGGAGGCGGACGTGGTCGAGAGAGCAAGGAACCTTCAGGCAGAGATCG
ACGTGGTGGTAAAGGCTTGTGCGTGAATGCATCTACCCTTATGCCGAGTC
CTGGCGCTCCTGGTCATCACCCCTAGCTTCTATGCTTTCCTCTTCTCCGC
CGCTCCAGGCCCGTTGCAGCATGACCGACTGCAGCAGGGACTAAGGCAAT
GTACGCCCTCGACAGCAGCAAGCCCTGGAGCCCGTGTCCCGTCCACAATT
TTGCTTGCGGCTGAGACCGGCGTATCAAAAGCGGCGGATGCCGAGAAATT
TGACAAGCTCATTACCGAAATGCTGGCGTCATCAGATCTCCCTACACTGG
CCCTTGAGAAAGCTGACTCGTTCGACTATCACTTTATGAGCCATCTCATG
CAGCGTCTGCAGACCTCCTCAGACGAAACCGAGATTGCCGCCTTGAACCA
AGTAGGGGAGGCGGTGAATTTTGCCATGCAGCAGAGACTGGCCAAGGCTG
ATTTTATTCTACGGGGGATCTTGAAGAGTGGGGACCTGAAGGTCATGGAA
GCCAAAATGCGGAAACACCTCAAAGCTAACGAACTGGACATGGCCTTCGA
TGTCATCCTCAACATGAACATCCAACAAGCCCGGGCCGACGACACCGATG
GAGGGAACGACGCCGCTGCCAATATTTTGCAGCATCTTGCCACCATGCTG
AGTGAAGAACGAGACAAACGCCTCTCCCCCCCAACCCGCCTCCTCCGCAT
GCTCCTCCGTGCGAAGGACGAGGCGGAACGGCAGGGGATCCTGCTCGAGA
AGCTCGTCCTCGCCAACCCTCCCAAGCGCCCGCCGGTTCTCAACGAGGAA
ACGGGGGAGGAGGAGGAGCAGGAACCTTTGTGGGGCGTGGCAGACACCCA
ACCAGAGGAGCTCGCACAGTCATTGAAAGATTTTTTGGAGGAAATTAAGG
CGTTCGAGGAGGAGCTGGAGGCGGACGTGGTCGAGAGAGCAAGGAACCTT
CAGGCAGAGATCGACGTGGTGGTAAAGGCTTGTGCGTGA

Synonyms

Publications