jgi.p|Nanoce1779_2|598051, mRNA_7268 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598051
Unique NamemRNA_7268
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_19:96826..98123 -

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Properties
Property NameValue
TranscriptId598137
TrackFilteredModels2
ProteinId598051
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:96826..98123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598051gene_7268Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598051mRNA_7268-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7268CDS_7268Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7268 ID=mRNA_7268|Name=jgi.p|Nanoce1779_2|598051|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
GGGAGGTATTGCCTCATGTCCCTATTTCTCGCCTCCCGTCTTTTTTCATT
TCTTATTGCCCTGCGCTCTTCACCAACGCACCCATATAAAGACCCCACTA
CCAGCCTCGCCACTTCCAGACACGTAGCGCCCAGCATCATGTCTTCAGCC
GCCGGAAAAGATGAGACCAAGACGGCCAAAGGTGCCAAGATTGCCGACCT
GGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTTCTGTGTCTCAGG
CCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCACGAGGCCGCC
AAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGAAGGAGAACAA
CGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCAACCCCTACTC
TGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGAGCTCTCCCAC
CACCACCATCACCACCATCAGCAGCAGCAGCAACACTTCAACCGTAACAC
GCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGGGGGTATGCAC
CGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATATGGCTATCCG
CAGCATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGGGTAGGATGGG
TGTAGGTATGGGTGCACCTACTTACGTGGAGAAAATATTCTCCGGGTCGT
TTGCAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTCTCCCACACGC
TCCCCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCACAGTGCCTAT
GAGCATCAAGATGGTGCCCAACATCACTTCCATGGAGGAGGAGGAAGAAA
TGGCGGTGGTGGTAGCTGGGTGAACCACCACTACCAGCAGCAGCAGCAGC
AGCAGCTGCAGCAGCAGCAGCAAGAGCCTCGAGAGTTCGAGGCAAATGAG
C
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protein sequence of jgi.p|Nanoce1779_2|598051

>mRNA_7268-protein ID=mRNA_7268-protein|Name=jgi.p|Nanoce1779_2|598051|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSLFLASRLFSFLIALRSSPTHPYKDPTTSLATSRHVAPSIMSSAAGKDE
TKTAKGAKIADLDADEAGKKFAALSVSQAASKDNCVTAALIHEAAKPTGE
GENVEEMKKENNDSSSSSSSSSSLATPTLRSAARAFVPRAPELSHHHHHH
HQQQQQHFNRNTRQQHHYGEGGRGRGYAPGQQHLEGEQYSAYGYPQHGGY
ICMEGGCEGRMGVGMGAPTYVEKIFSGSFAAFFLCLLPHSLSPTRSPSPF
LSPSSRHTTVPMSIKMVPNITSMEEEEEMAVVVAG*
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mRNA from alignment at scaffold_19:96826..98123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7268 ID=mRNA_7268|Name=jgi.p|Nanoce1779_2|598051|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at scaffold_19:96826..98123- (Nannochloropsis oceanica)
GGGAGGTATTGCCTCATGTCCCTATTTCTCGCCTCCCGTCTTTTTTCATT
TCTTATTGCCCTGCGCTCTTCACCAACGCACCCATATAAAGACCCCACTA
CCAGCCTCGCCACTTCCAGACACGTAGCGCCCAGCATCATGTCTTCAGCC
GCCGGAAAAGATGAGGTAAGTGCAACATCCTCAGTCCATGGCCCACACCA
GAGGACATACAACTCGTCTCATTTATCCACCTGCCCACCCTCCCTCCACC
CTCTTCTTCAATCCCCCTTATACACCCAACCCTCCAATTGCTGCCGCCCC
TGTGAAGACCAAGACGGCCAAAGGTGCCAAGATTGCCGACCTGGACGCGG
ATGAGGCGGGAAAGAAATTCGCAGCGCTTTCTGTGTCTCAGGTAGGTAAA
CGTAAAACATAACGCGCTCAGATCCCAGGGCATGTGTAGAATACACAGGG
AGGCAACTGGATTGATGCCGCATGCAAACTGGTCTTCTTGTAGGGGAAAG
TAAAAAGGAGTGTCGGCGCCCCCAAAATCTATACACGCAAGCCCTCACCT
CCAGTTTTCTATCCACCCCTCCCATCCCCCACACTCTCCCACCCAGGCCG
CCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCACGAGGCCGCCAAG
CCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGAAGGAGAACAACGA
TTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCAACCCCTACTCTGC
GCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGAGCTCTCCCACCAC
CACCATCACCACCATCAGCAGCAGCAGCAACACTTCAACCGTAACACGCG
ACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGGGGGTATGCACCGG
GGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATATGGCTATCCGCAG
CATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGGGTAGGATGGGTGT
AGGTATGGGTGCACCTACTTACGTGGAGAAAATATTCTCCGGGTCGTTTG
CAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTCTCCCACACGCTCC
CCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCACAGTGCCTATGAG
CATCAAGATGGTGCCCAACATCACTTCCATGGAGGAGGAGGAAGAAATGG
CGGTGGTGGTAGCTGGGTGAACCACCACTACCAGCAGCAGCAGCAGCAGC
AGCTGCAGCAGCAGCAGCAAGAGCCTCGAGAGTTCGAGGCAAATGAGC
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Coding sequence (CDS) from alignment at scaffold_19:96826..98123-

>mRNA_7268 ID=mRNA_7268|Name=jgi.p|Nanoce1779_2|598051|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_19:96826..98123- (Nannochloropsis oceanica)
GCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCACGAGGCCGC
CAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGAAGGAGAACA
ACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCAACCCCTACT
CTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGAGCTCTCCCA
CCACCACCATCACCACCATCAGCAGCAGCAGCAACACTTCAACCGTAACA
CGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGGGGGTATGCA
CCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATATGGCTATCC
GCAGCATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGGGTAGGATGG
GTGTAGGTATGGGTGCACCTACTTACGTGGAGAAAATATTCTCCGGGTCG
TTTGCAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTCTCCCACACG
CTCCCCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCACAGTGCCTA
TGAGCATCAAGATGGTGCCCAACATCACTTCCATGGAGGAGGAGGAAGAA
ATGGCGGTGGTGGTAGCTGGGTGAACCAAGACGGCCAAAGGTGCCAAGAT
TGCCGACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGCGCTTTCTG
TGTCTCAGATGTCCCTATTTCTCGCCTCCCGTCTTTTTTCATTTCTTATT
GCCCTGCGCTCTTCACCAACGCACCCATATAAAGACCCCACTACCAGCCT
CGCCACTTCCAGACACGTAGCGCCCAGCATCATGTCTTCAGCCGCCGGAA
AAGATGAGGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTCTTATCCAC
GAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAGATGAAGAA
GGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTGGCAA
CCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAGCGCCCGAG
CTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAACACTTCAA
CCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAGAGGACGGG
GGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATAGTGCATAT
GGCTATCCGCAGCATGGAGGGTATATATGCATGGAGGGAGGGTGTGAGGG
TAGGATGGGTGTAGGTATGGGTGCACCTACTTACGTGGAGAAAATATTCT
CCGGGTCGTTTGCAGCTTTCTTCTTGTGCTTACTCCCTCACTCTCTCTCT
CCCACACGCTCCCCTTCTCCCTTCCTCTCACCATCTTCTCGGCACACCAC
AGTGCCTATGAGCATCAAGATGGTGCCCAACATCACTTCCATGGAGGAGG
AGGAAGAAATGGCGGTGGTGGTAGCTGGGTGAACCAAGACGGCCAAAGGT
GCCAAGATTGCCGACCTGGACGCGGATGAGGCGGGAAAGAAATTCGCAGC
GCTTTCTGTGTCTCAGATGTCCCTATTTCTCGCCTCCCGTCTTTTTTCAT
TTCTTATTGCCCTGCGCTCTTCACCAACGCACCCATATAAAGACCCCACT
ACCAGCCTCGCCACTTCCAGACACGTAGCGCCCAGCATCATGTCTTCAGC
CGCCGGAAAAGATGAGGCCGCCAGCAAGGACAACTGCGTTACTGCCGCTC
TTATCCACGAGGCCGCCAAGCCTACCGGAGAGGGAGAGAATGTGGAAGAG
ATGAAGAAGGAGAACAACGATTCCTCCTCCTCCTCCTCTTCCTCCTCCTC
CCTGGCAACCCCTACTCTGCGCTCAGCTGCCCGTGCGTTCGTACCACGAG
CGCCCGAGCTCTCCCACCACCACCATCACCACCATCAGCAGCAGCAGCAA
CACTTCAACCGTAACACGCGACAACAGCACCATTATGGGGAAGGAGGAAG
AGGACGGGGGTATGCACCGGGGCAGCAGCATCTGGAGGGGGAACAGTATA
GTGCATATGGCTATCCGCAGCATGGAGGGTATATATGCATGGAGGGAGGG
TGTGAGGGTAGGATGGGTGTAGGTATGGGTGCACCTACTTACGTGGAGAA
AATATTCTCCGGGTCGTTTGCAGCTTTCTTCTTGTGCTTACTCCCTCACT
CTCTCTCTCCCACACGCTCCCCTTCTCCCTTCCTCTCACCATCTTCTCGG
CACACCACAGTGCCTATGAGCATCAAGATGGTGCCCAACATCACTTCCAT
GGAGGAGGAGGAAGAAATGGCGGTGGTGGTAGCTGGGTGAACCAAGACGG
CCAAAGGTGCCAAGATTGCCGACCTGGACGCGGATGAGGCGGGAAAGAAA
TTCGCAGCGCTTTCTGTGTCTCAGATGTCCCTATTTCTCGCCTCCCGTCT
TTTTTCATTTCTTATTGCCCTGCGCTCTTCACCAACGCACCCATATAAAG
ACCCCACTACCAGCCTCGCCACTTCCAGACACGTAGCGCCCAGCATCATG
TCTTCAGCCGCCGGAAAAGATGAG
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Synonyms
Publications