jgi.p|Nanoce1779_2|598011, mRNA_7261 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|598011
Unique NamemRNA_7261
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length777
Alignment locationscaffold_19:76804..78075 -

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Properties
Property NameValue
TranscriptId598097
TrackFilteredModels2
ProteinId598011
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:76804..78075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598011gene_7261Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598011mRNA_7261-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7261CDS_7261Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7261 ID=mRNA_7261|Name=jgi.p|Nanoce1779_2|598011|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
GTAGGGTTTTCTGGCGATGACGCCTCTGATGAGACTTGCCCTCAAGCACG
TCCTCGTCCTCTCCCTCCCCTACCTACAGGCAGACGGGGGGAGTCGAATG
GAACCACCAGAGCTGAAGACTTTGTCATGGGTGGACCAGGGGTCGATGCG
ATCCATCTCCTTACCCTTTTCTTCCTTTCCTTGCGAATGCACAAGCACAC
AGGGCAGCCAAGCGAAGAAGCAGGCCGCTGCCGGGAGTATCAATCATCTG
CATAACTTCCCACCCAGCGCGGCCACCCTTCTACGTACACCAACACACAA
ACCACAAACACCGGCGTGACTGACGGAAAGAATCATGGCGTCCGGTCTCT
CAGACTTCAAAAAGCGGGAAGAAGAAAAGAAAGCGCGCCAAGCAGGGGAG
CTTGCCCCCGAGATCGATGCGGCTTCGGGTAAGATGATTAACCCTCACAA
CCCCGACTACATTACCAAGCGGCCGTGGTACCTTGGCGAAAGCGGGCCAT
CCCTCAACCACCACGCAAAGCAGGGGGCAAGAGGGGAGGAGTCCTTGCTG
TCACTGCAAGAAACGGAGGAACTGCTGGCACGCCAAGCCCGACTGCAGCA
GCAAAAGAAGGCGCAGGGGCGGGATAGGGCGACGGTCTTTCGCAAAGGAG
CTTGTGAGAATTGCGGAGCCATGACGCATAAAAAGAAAGAGTGCGTGGAA
CGACCACGCTCTTTGGGGAAGACAGCCAAAATTAGCGGGCTCGACATTGC
GCCGGACGAGGCCGTGCGAGGGGTGGA
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protein sequence of jgi.p|Nanoce1779_2|598011

>mRNA_7261-protein ID=mRNA_7261-protein|Name=jgi.p|Nanoce1779_2|598011|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MTPLMRLALKHVLVLSLPYLQADGGSRMEPPELKTLSWVDQGSMRSISLP
FSSFPCECTSTQGSQAKKQAAAGSINHLHNFPPSAATLLRTPTHKPQTPA
*
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mRNA from alignment at scaffold_19:76804..78075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7261 ID=mRNA_7261|Name=jgi.p|Nanoce1779_2|598011|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp|location=Sequence derived from alignment at scaffold_19:76804..78075- (Nannochloropsis oceanica)
GTAGGGTTTTCTGGCGATGACGCCTCTGATGAGACTTGCCCTCAAGCACG
TCCTCGTCCTCTCCCTCCCCTACCTACAGGCAGACGGGGGGAGTCGAATG
GAACCACCAGAGCTGAAGACTTTGTCATGGGTGGACCAGGGGTCGATGCG
ATCCATCTCCTTACCCTTTTCTTCCTTTCCTTGCGAATGCACAAGCACAC
AGGGCAGCCAAGCGAAGAAGCAGGCCGCTGCCGGGAGTATCAATCATCTG
CATAACTTCCCACCCAGCGCGGCCACCCTTCTACGTACACCAACACACAA
ACCACAAACACCGGCGTGACTGACGGAAAGGTAAGATGCGATCGGAGGAC
CGGAAAGAGGAGGGCGCGATGGGAAGGCAGGTTGGACGTGGACTTGAACT
GCTGGCTGTGTGGAGGATTGTGCTTATGTTGAGCAGTCGGGGTAGGGGGA
AGAGCACGCCTGCGCGAGCCTGCCAGGTGCGCGTAAAAGGCAAAAATGGA
GGAATAGATGGATAAACATTTTTTTGTGTCCATGGATATTCACTGATAGG
TTGGGATTAGGGCTTTATCACCGCGGATGTGTGTAGGTCGCGCCCGGCAA
CATCGATTCCCGTCCTCACCCATGACTCCCTCCTCCCTCTTTTCTCTATT
CCTCCCTCCTTCCGTAGAATCATGGCGTCCGGTCTCTCAGACTTCAAAAA
GCGGGAAGAAGAAAAGAAAGCGCGCCAAGCAGGGGAGCTTGCCCCCGAGA
TCGATGCGGCTTCGGGTAAGATGATTAACCCTCACAACCCCGACTACATT
ACCAAGCGGCCGTGGTACCTTGGCGAAAGCGGGCCATCCCTCAACCACCA
CGCAAAGCAGGGGGCAAGAGGGGAGGAGTCCTTGCTGTCACTGCAAGAAA
CGGAGGAACTGCTGGCACGCCAAGCCCGACTGCAGCAGCAAAAGAAGGCG
CAGGGGCGGGATAGGGCGACGGTCTTTCGCAAAGGAGCTTGTGAGAATTG
CGGAGCCATGACGCATAAAAAGAAAGAGTGCGTGGAACGACCACGCTCTT
TGGGGAAGACAGGTAAGGGGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGGAGGTGAAGAGTGCATCGATGCGTGCCACTAGCTGATCACT
AAACCCTCCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCCCCACCTTTCCT
CCTTTCCACTCACACGACAGCCAAAATTAGCGGGCTCGACATTGCGCCGG
ACGAGGCCGTGCGAGGGGTGGA
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Coding sequence (CDS) from alignment at scaffold_19:76804..78075-

>mRNA_7261 ID=mRNA_7261|Name=jgi.p|Nanoce1779_2|598011|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_19:76804..78075- (Nannochloropsis oceanica)
ATGACGCCTCTGATGAGACTTGCCCTCAAGCACGTCCTCGTCCTCTCCCT
CCCCTACCTACAGGCAGACGGGGGGAGTCGAATGGAACCACCAGAGCTGA
AGACTTTGTCATGGGTGGACCAGGGGTCGATGCGATCCATCTCCTTACCC
TTTTCTTCCTTTCCTTGCGAATGCACAAGCACACAGGGCAGCCAAGCGAA
GAAGCAGGCCGCTGCCGGGAGTATCAATCATCTGCATAACTTCCCACCCA
GCGCGGCCACCCTTCTACGTACACCAACACACAAACCACAAACACCGGCG
TGA
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Synonyms
Publications