jgi.p|Nanoce1779_2|597997, mRNA_7258 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597997
Unique NamemRNA_7258
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length382
Alignment locationscaffold_19:69762..70143 +

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Properties
Property NameValue
TranscriptId598083
TrackFilteredModels2
ProteinId597997
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:69762..70143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597997gene_7258Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597997mRNA_7258-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7258CDS_7258Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7258 ID=mRNA_7258|Name=jgi.p|Nanoce1779_2|597997|organism=Nannochloropsis oceanica|type=mRNA|length=382bp
AGAAGGATGGGCCGTCGGAGCGCAAGAATCGTGCTACTGTTGCTACTGCT
GCTACTGCTGCTGCTGCTGCGGCTGCTGCTGCTGCCGCTGCTGCCGCTGC
TGCCGTTTCTGCCGCTGCTGGTAGTGTTGGGTGAATGTGCGCAAGAAGAT
GTAGGACGGAGAAACATGGAGGGCGAATATTGGGGTTGCGACAAAGGCAA
AGGGAGTGATGGAGCTGCCCATGCCTTCTTTTGCTGCTGCGTTGACATAA
TTAAATGCTGTTCTGCTGGTGCGGGCGATCCTCCTTCCGCTGCTGTCGCT
GCTGCTGCTGCTGCTGCTGTTGGAGCTGCACTGGTGTCAGGATAGGCTGA
TGGCAGAGGTTTTGCGAAGGGGGCTTGCAAAT
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protein sequence of jgi.p|Nanoce1779_2|597997

>mRNA_7258-protein ID=mRNA_7258-protein|Name=jgi.p|Nanoce1779_2|597997|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MGRRSARIVLLLLLLLLLLLLRLLLLPLLPLLPFLPLLVVLGECAQEDVG
RRNMEGEYWGCDKGKGSDGAAHAFFCCCVDIIKCCSAGAGDPPSAAVAAA
AAAAVGAALVSG*
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mRNA from alignment at scaffold_19:69762..70143+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7258 ID=mRNA_7258|Name=jgi.p|Nanoce1779_2|597997|organism=Nannochloropsis oceanica|type=mRNA|length=382bp|location=Sequence derived from alignment at scaffold_19:69762..70143+ (Nannochloropsis oceanica)
AGAAGGATGGGCCGTCGGAGCGCAAGAATCGTGCTACTGTTGCTACTGCT
GCTACTGCTGCTGCTGCTGCGGCTGCTGCTGCTGCCGCTGCTGCCGCTGC
TGCCGTTTCTGCCGCTGCTGGTAGTGTTGGGTGAATGTGCGCAAGAAGAT
GTAGGACGGAGAAACATGGAGGGCGAATATTGGGGTTGCGACAAAGGCAA
AGGGAGTGATGGAGCTGCCCATGCCTTCTTTTGCTGCTGCGTTGACATAA
TTAAATGCTGTTCTGCTGGTGCGGGCGATCCTCCTTCCGCTGCTGTCGCT
GCTGCTGCTGCTGCTGCTGTTGGAGCTGCACTGGTGTCAGGATAGGCTGA
TGGCAGAGGTTTTGCGAAGGGGGCTTGCAAAT
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Coding sequence (CDS) from alignment at scaffold_19:69762..70143+

>mRNA_7258 ID=mRNA_7258|Name=jgi.p|Nanoce1779_2|597997|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_19:69762..70143+ (Nannochloropsis oceanica)
ATGGGCCGTCGGAGCGCAAGAATCGTGCTACTGTTGCTACTGCTGCTACT
GCTGCTGCTGCTGCGGCTGCTGCTGCTGCCGCTGCTGCCGCTGCTGCCGT
TTCTGCCGCTGCTGGTAGTGTTGGGTGAATGTGCGCAAGAAGATGTAGGA
CGGAGAAACATGGAGGGCGAATATTGGGGTTGCGACAAAGGCAAAGGGAG
TGATGGAGCTGCCCATGCCTTCTTTTGCTGCTGCGTTGACATAATTAAAT
GCTGTTCTGCTGGTGCGGGCGATCCTCCTTCCGCTGCTGTCGCTGCTGCT
GCTGCTGCTGCTGTTGGAGCTGCACTGGTGTCAGGATAG
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Synonyms
Publications