jgi.p|Nanoce1779_2|128733, mRNA_7256 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|128733
Unique NamemRNA_7256
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_19:65893..66964 +

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Properties
Property NameValue
TranscriptId128819
TrackFilteredModels2
ProteinId128733
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:65893..66964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128733gene_7256Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128733mRNA_7256-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7256CDS_7256Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7256 ID=mRNA_7256|Name=jgi.p|Nanoce1779_2|128733|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
GGGAGGGAGGGAGGGAGGGAGGGGGTCGCCCCTACTTCCGGCGAGGAAGA
GGAGGAGGACGGGGTTGAGGAGGAAGGAAGCAGCGCGATGGCATCAGAGA
GAAAGGAGGAGATAGATCCCACGTTCCCTTCCTTCATCCCTCCTTGTCCG
GCAGTGCCGCTGCTGCAGCTGCTGGTGCAGCCATCTTTGCCCTTCCTCCT
CCTCGGGCAAGTGGGGTTCTCCGTGCCAGCCCTGTGGATGATGACTCTGC
TTGTGCTGTTACTGCTGGTGCTGTTACTGCTGGTGCTGCTGTCGCTGGAG
CTGTTACAATTCTGCCTATTGGACACGTCAGTAATTGGGCCCGTTGGGAG
AGGAAAGATGGAAGGTGGAGGACGTGTGAAGGAGGAGGAGGAGGAAGAAG
AGGAGGAGAAAGCGGGGCACGGATGGGGTAGGGAGCTTGCAGTGAAAACA
GATGAGCCTGAAAGGCTTCACGTAAGAAGAAGAGGGAATGAGGGAATGAG
GGAGGTGAGAAGCGGATATCAAGATACAGATCTACTGAACGGTAAGCCGA
AGCCCAGGAGGAAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAG
GGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAAGAGGGAGGG
AAAGAAGGAGGGAGGGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGG
AAAGAAGGCGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGAA
AGAAAGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAGGAGGGATGCCTAC
CTTCTCTTTGACGCTTTGTTAGTGTCTGATGCTGCTTCTCTCGCTGCAGC
CCTTGATGGACCCCAGGCCCGCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|128733

>mRNA_7256-protein ID=mRNA_7256-protein|Name=jgi.p|Nanoce1779_2|128733|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MASERKEEIDPTFPSFIPPCPAVPLLQLLVQPSLPFLLLGQVGFSVPALW
MMTLLVLLLLVLLLLVLLSLELLQFCLLDTSVIGPVGRGKMEGGGRVKEE
EEEEEEEKAGHGWGRELAVKTDEPERLHVRRRGNEGMREVRSGYQDTDLL
NGKPKPRRKGGKEGGRERRREGKKEGGKEGGRERKREGKKEGGGKKEGGK
EGGRERRREGKKEGGKEGGRERKREGKKAGGKEGGMPTFSLTLC*
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mRNA from alignment at scaffold_19:65893..66964+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7256 ID=mRNA_7256|Name=jgi.p|Nanoce1779_2|128733|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp|location=Sequence derived from alignment at scaffold_19:65893..66964+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGGAGGGGGTCGCCCCTACTTCCGGCGAGGAAGA
GGAGGAGGACGGGGTTGAGGAGGAAGGAAGCAGCGCGATGGCATCAGAGA
GAAAGGAGGAGATAGATCCCACGTTCCCTTCCTTCATCCCTCCTTGTCCG
GCAGTGCCGCTGCTGCAGCTGCTGGTGCAGCCATCTTTGCCCTTCCTCCT
CCTCGGGCAAGTGGGGTTCTCCGTGCCAGCCCTGTGGATGATGACTCTGC
TTGTGCTGTTACTGCTGGTGCTGTTACTGCTGGTGCTGCTGTCGCTGGAG
CTGTTACAATTCTGCCTATTGGACACGTCAGTAATTGGGCCCGTTGGGAG
AGGAAAGATGGAAGGTGGAGGACGTGTGAAGGAGGAGGAGGAGGAAGAAG
AGGAGGAGAAAGCGGGGCACGGATGGGGTAGGGAGCTTGCAGTGAAAACA
GATGAGCCTGAAAGGCTTCACGTAAGAAGAAGAGGGAATGAGGGAATGAG
GGAGGTGAGAAGCGGATATCAAGATACAGATCTACTGAACGGTAAGCCGA
AGCCCAGGAGGAAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAG
GGAAAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAGGCGGGAGGG
AAAGAAAGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAAGAGGGAGGGAA
AGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAG
AAAGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAAGAGGGAGGGAAAGAA
GGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAAG
AGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGCG
GGAGGGAAAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAAGAGGG
AGGGAAAGAAGGCGGGAGGGAAAGAAGGAGGGATGCCTACCTTCTCTTTG
ACGCTTTGTTAGTGTCTGATGCTGCTTCTCTCGCTGCAGCCCTTGATGGA
CCCCAGGCCCGCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_19:65893..66964+

>mRNA_7256 ID=mRNA_7256|Name=jgi.p|Nanoce1779_2|128733|organism=Nannochloropsis oceanica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_19:65893..66964+ (Nannochloropsis oceanica)
ATGGCATCAGAGAGAAAGGAGGAGATAGATCCCACGTTCCCTTCCTTCAT
CCCTCCTTGTCCGGCAGTGCCGCTGCTGCAGCTGCTGGTGCAGCCATCTT
TGCCCTTCCTCCTCCTCGGGCAAGTGGGGTTCTCCGTGCCAGCCCTGTGG
ATGATGACTCTGCTTGTGCTGTTACTGCTGGTGCTGTTACTGCTGGTGCT
GCTGTCGCTGGAGCTGTTACAATTCTGCCTATTGGACACGTCAGTAATTG
GGCCCGTTGGGAGAGGAAAGATGGAAGGTGGAGGACGTGTGAAGGAGGAG
GAGGAGGAAGAAGAGGAGGAGAAAGCGGGGCACGGATGGGGTAGGGAGCT
TGCAGTGAAAACAGATGAGCCTGAAAGGCTTCACGTAAGAAGAAGAGGGA
ATGAGGGAATGAGGGAGGTGAGAAGCGGATATCAAGATACAGATCTACTG
AACGGTAAGCCGAAGCCCAGGAGGAAGGGAGGGAAAGAAGGAGGGAGGGA
AAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAA
GAAAGAGGGAGGGAAAGAAGGAGGGAGGGGGAAAGAAGGAGGGAGGGAAA
GAAGGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAGGAGGGAGGGAAAGA
AGGCGGGAGGGAAAGAAAGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAG
GAGGGATGCCTACCTTCTCTTTGACGCTTTGTTAGATGGCATCAGAGAGA
AAGGAGGAGATAGATCCCACGTTCCCTTCCTTCATCCCTCCTTGTCCGGC
AGTGCCGCTGCTGCAGCTGCTGGTGCAGCCATCTTTGCCCTTCCTCCTCC
TCGGGCAAGTGGGGTTCTCCGTGCCAGCCCTGTGGATGATGACTCTGCTT
GTGCTGTTACTGCTGGTGCTGTTACTGCTGGTGCTGCTGTCGCTGGAGCT
GTTACAATTCTGCCTATTGGACACGTCAGTAATTGGGCCCGTTGGGAGAG
GAAAGATGGAAGGTGGAGGACGTGTGAAGGAGGAGGAGGAGGAAGAAGAG
GAGGAGAAAGCGGGGCACGGATGGGGTAGGGAGCTTGCAGTGAAAACAGA
TGAGCCTGAAAGGCTTCACGTAAGAAGAAGAGGGAATGAGGGAATGAGGG
AGGTGAGAAGCGGATATCAAGATACAGATCTACTGAACGGTAAGCCGAAG
CCCAGGAGGAAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGG
AAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAAGAGGGAGGGAA
AGAAGGAGGGAGGGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAA
AGAAGGCGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGAAAG
AAAGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAGGAGGGATGCCTACCT
TCTCTTTGACGCTTTGTTAGATGGCATCAGAGAGAAAGGAGGAGATAGAT
CCCACGTTCCCTTCCTTCATCCCTCCTTGTCCGGCAGTGCCGCTGCTGCA
GCTGCTGGTGCAGCCATCTTTGCCCTTCCTCCTCCTCGGGCAAGTGGGGT
TCTCCGTGCCAGCCCTGTGGATGATGACTCTGCTTGTGCTGTTACTGCTG
GTGCTGTTACTGCTGGTGCTGCTGTCGCTGGAGCTGTTACAATTCTGCCT
ATTGGACACGTCAGTAATTGGGCCCGTTGGGAGAGGAAAGATGGAAGGTG
GAGGACGTGTGAAGGAGGAGGAGGAGGAAGAAGAGGAGGAGAAAGCGGGG
CACGGATGGGGTAGGGAGCTTGCAGTGAAAACAGATGAGCCTGAAAGGCT
TCACGTAAGAAGAAGAGGGAATGAGGGAATGAGGGAGGTGAGAAGCGGAT
ATCAAGATACAGATCTACTGAACGGTAAGCCGAAGCCCAGGAGGAAGGGA
GGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGG
GAAAGAAGGAGGGAGGGAAAGAAAGAGGGAGGGAAAGAAGGAGGGAGGGG
GAAAGAAGGAGGGAGGGAAAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGA
AAGAAGGAGGGAGGGAAAGAAGGCGGGAGGGAAAGAAAGAGGGAGGGAAA
GAAGGCGGGAGGGAAAGAAGGAGGGATGCCTACCTTCTCTTTGACGCTTT
GTTAG
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Synonyms
Publications