jgi.p|Nanoce1779_2|128675, mRNA_7255 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|128675
Unique NamemRNA_7255
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length743
Alignment locationscaffold_19:63621..64363 -

Link to JBrowse

Properties
Property NameValue
TranscriptId128761
TrackFilteredModels2
ProteinId128675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:63621..64363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128675gene_7255Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128675mRNA_7255-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7255CDS_7255Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7255 ID=mRNA_7255|Name=jgi.p|Nanoce1779_2|128675|organism=Nannochloropsis oceanica|type=mRNA|length=743bp
TACAAATGCATTATTCATGTGCGCTTTCATTCCCTATCCCAATCCACTGA
GTACTTTATGAAGTGAAAAATCGACGCTTCGGATATGGGCGCGCATAGGA
GCTGGAAGACGCAAGGGGGAACGATGCCGAAGCCACAGGCTCTTAGAGCT
GAAACTTCTACCTGGCATAGCATTGCTTGGGCCCCTTTTCGAGTGCCAGA
GTCTAGTCATCCTCTATACACATATATAATCTATCCTATTTCTCCCTGCA
TTGCCTTAGGCTCACAGAGTTCGTCCAAGGGCTCCCCCGATACTCCTCGG
AGATATTATATAACCCTCCAAACAACGAGGGCGCTGCGATGTATGGAGCC
TCATGGCCACAACCCCGTCTCCTTGCTGCACCCCCGTGCTACACATCCTC
AAGAGTGCCCGCGTAATGATAGCCTCTTCTCGCCTCGCCCCACTCGTGCT
CCAACATTAACTCTGTCATCGATCCCTGCTGATTCCCTCGGTCTTTCTCC
TCCAACGAGCAGCATGCCCTACACCCGCAGCAGCCAGAATGTTAGCTCGC
CAGCCCCTACAAATATCAGGTACAGAAGCCATCCTCAACGAGCCTTGGCA
TGCTTGCATTGCCGGAGATCCAAAGTAAAGTGCGACAAGAAACAGCCGAC
TTGTACTCGGTAAGTACCCACCAGAGCGGGATGGCGTCATCGTCCCGCGA
AAACACCAGTGGCCTGATGCCGGCAGCCACCCCGTCATGGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|128675

>mRNA_7255-protein ID=mRNA_7255-protein|Name=jgi.p|Nanoce1779_2|128675|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MGAHRSWKTQGGTMPKPQALRAETSTWHSIAWAPFRVPESSHPLYTYIIY
PISPCIALGSQSSSKGSPDTPRRYYITLQTTRALRCMEPHGHNPVSLLHP
RATHPQECPRNDSLFSPRPTRAPTLTLSSIPADSLGLSPPTSSMPYTRSS
QNVSSPAPTNIRYRSHPQRALACLHCRRSKVKCDKKQPTCTR*
back to top

mRNA from alignment at scaffold_19:63621..64363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7255 ID=mRNA_7255|Name=jgi.p|Nanoce1779_2|128675|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at scaffold_19:63621..64363- (Nannochloropsis oceanica)
TACAAATGCATTATTCATGTGCGCTTTCATTCCCTATCCCAATCCACTGA
GTACTTTATGAAGTGAAAAATCGACGCTTCGGATATGGGCGCGCATAGGA
GCTGGAAGACGCAAGGGGGAACGATGCCGAAGCCACAGGCTCTTAGAGCT
GAAACTTCTACCTGGCATAGCATTGCTTGGGCCCCTTTTCGAGTGCCAGA
GTCTAGTCATCCTCTATACACATATATAATCTATCCTATTTCTCCCTGCA
TTGCCTTAGGCTCACAGAGTTCGTCCAAGGGCTCCCCCGATACTCCTCGG
AGATATTATATAACCCTCCAAACAACGAGGGCGCTGCGATGTATGGAGCC
TCATGGCCACAACCCCGTCTCCTTGCTGCACCCCCGTGCTACACATCCTC
AAGAGTGCCCGCGTAATGATAGCCTCTTCTCGCCTCGCCCCACTCGTGCT
CCAACATTAACTCTGTCATCGATCCCTGCTGATTCCCTCGGTCTTTCTCC
TCCAACGAGCAGCATGCCCTACACCCGCAGCAGCCAGAATGTTAGCTCGC
CAGCCCCTACAAATATCAGGTACAGAAGCCATCCTCAACGAGCCTTGGCA
TGCTTGCATTGCCGGAGATCCAAAGTAAAGTGCGACAAGAAACAGCCGAC
TTGTACTCGGTAAGTACCCACCAGAGCGGGATGGCGTCATCGTCCCGCGA
AAACACCAGTGGCCTGATGCCGGCAGCCACCCCGTCATGGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_19:63621..64363-

>mRNA_7255 ID=mRNA_7255|Name=jgi.p|Nanoce1779_2|128675|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_19:63621..64363- (Nannochloropsis oceanica)
ATGGGCGCGCATAGGAGCTGGAAGACGCAAGGGGGAACGATGCCGAAGCC
ACAGGCTCTTAGAGCTGAAACTTCTACCTGGCATAGCATTGCTTGGGCCC
CTTTTCGAGTGCCAGAGTCTAGTCATCCTCTATACACATATATAATCTAT
CCTATTTCTCCCTGCATTGCCTTAGGCTCACAGAGTTCGTCCAAGGGCTC
CCCCGATACTCCTCGGAGATATTATATAACCCTCCAAACAACGAGGGCGC
TGCGATGTATGGAGCCTCATGGCCACAACCCCGTCTCCTTGCTGCACCCC
CGTGCTACACATCCTCAAGAGTGCCCGCGTAATGATAGCCTCTTCTCGCC
TCGCCCCACTCGTGCTCCAACATTAACTCTGTCATCGATCCCTGCTGATT
CCCTCGGTCTTTCTCCTCCAACGAGCAGCATGCCCTACACCCGCAGCAGC
CAGAATGTTAGCTCGCCAGCCCCTACAAATATCAGGTACAGAAGCCATCC
TCAACGAGCCTTGGCATGCTTGCATTGCCGGAGATCCAAAGTAAAGTGCG
ACAAGAAACAGCCGACTTGTACTCGGTAA
back to top
Synonyms
Publications