jgi.p|Nanoce1779_2|128695, mRNA_7254 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|128695
Unique NamemRNA_7254
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1095
Alignment locationscaffold_19:61309..62403 -

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Properties
Property NameValue
TranscriptId128781
TrackFilteredModels2
ProteinId128695
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:61309..62403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128695gene_7254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128695mRNA_7254-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7254CDS_7254Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Nanoce1779_2|128695|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATACACTATATGCAGGTACAATTAACTTGCTTTGCCACCAGATGTAGCGC
ACACGCTCTCTTCCTCTTCCTCTTCCTCTTCCTCCTTGCCATCGTTCTTG
TCGTCCTCCTCCTCCTCCTTGTCCTCCTCCTTCCCCTCGTCCTCGTTTCC
TTCCTCCACCTTGCCCTCCTCCTCCTCCTCCTTGTCTTCGTTCTCCGACC
CGATGGCTCCTGTCCACAAGCGTCTGGTTACGGACAGCTTCTTAGCCCCC
TGCCCGCCACCCTCAAGCGCATATCAGCAATATCAGCTGCAGCAGCTGTT
ACTCGCCTCCCATCATCTCAAGCAGATACAGCAGCAGCAGCAGCAGCAGC
ATCAAAAGGTAGTGGAAGCGCTGGCCGTCATGCATAATGGTACACCCCTT
TCCCCCCGCCTTCTTCGTCCTCATGGACAAGAGCAACGACCACAACGACA
ACCGTACCAAACGCAACCGCAACTCCGGTCTCAGGCACTAAACGCTCTTT
GCTCTACTACACTCGTTCCTCGCCCTTCGTTCTCCTCCACCTCTTCCTCC
TCCACCGCTACATCCGCTGCCTTGCTATCTTTCCAGAACACCTCTACATG
CACAGACCCAAACACAAAGACGACGACCACCACCACCACCAGCAGCAGTA
GCAGCAGCAGCAGTGCCAGCTCGTGCTTGGATCCTCTCTCCTTCAACCTT
TCTCCATCCCACCCTTTCTTTCCTCTATTCCCTTCACTCCACCTCTCTCA
CCATCCTGCAGGGTACGTCCGAGACCAGGCAACCCTCACGAAGACTACAA
CGACGACGTAAACACTTCATTTGCACCTTACGGGCGTTGTGTGAGGGTAA
GAAAAAGGAGGAATTTAAACCGCGGAGGGGTGTAATTTCGAAGGTCTTCA
AAAGGGGGGGGCTAACGTGTCTACTGCTTCGACCACATCTCATGGAGGAT
ACCTTATAATTGCTTCGACTGAATGGTCTACCTCAACTTTAACATACATG
GGAGTAAATCCTACATTTTAGATAAACTGGTTACATAATTTTTAATGACC
CAAAAGAAGCAAAAGTATATTGGGGGGCTCTGCTTATAGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|128695

>mRNA_7254-protein ID=mRNA_7254-protein|Name=jgi.p|Nanoce1779_2|128695|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MAPVHKRLVTDSFLAPCPPPSSAYQQYQLQQLLLASHHLKQIQQQQQQQH
QKVVEALAVMHNGTPLSPRLLRPHGQEQRPQRQPYQTQPQLRSQALNALC
STTLVPRPSFSSTSSSSTATSAALLSFQNTSTCTDPNTKTTTTTTTSSSS
SSSSASSCLDPLSFNLSPSHPFFPLFPSLHLSHHPAGYVRDQATLTKTTT
TT*
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mRNA from alignment at scaffold_19:61309..62403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Nanoce1779_2|128695|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at scaffold_19:61309..62403- (Nannochloropsis oceanica)
ATACACTATATGCAGGTACAATTAACTTGCTTTGCCACCAGATGTAGCGC
ACACGCTCTCTTCCTCTTCCTCTTCCTCTTCCTCCTTGCCATCGTTCTTG
TCGTCCTCCTCCTCCTCCTTGTCCTCCTCCTTCCCCTCGTCCTCGTTTCC
TTCCTCCACCTTGCCCTCCTCCTCCTCCTCCTTGTCTTCGTTCTCCGACC
CGATGGCTCCTGTCCACAAGCGTCTGGTTACGGACAGCTTCTTAGCCCCC
TGCCCGCCACCCTCAAGCGCATATCAGCAATATCAGCTGCAGCAGCTGTT
ACTCGCCTCCCATCATCTCAAGCAGATACAGCAGCAGCAGCAGCAGCAGC
ATCAAAAGGTAGTGGAAGCGCTGGCCGTCATGCATAATGGTACACCCCTT
TCCCCCCGCCTTCTTCGTCCTCATGGACAAGAGCAACGACCACAACGACA
ACCGTACCAAACGCAACCGCAACTCCGGTCTCAGGCACTAAACGCTCTTT
GCTCTACTACACTCGTTCCTCGCCCTTCGTTCTCCTCCACCTCTTCCTCC
TCCACCGCTACATCCGCTGCCTTGCTATCTTTCCAGAACACCTCTACATG
CACAGACCCAAACACAAAGACGACGACCACCACCACCACCAGCAGCAGTA
GCAGCAGCAGCAGTGCCAGCTCGTGCTTGGATCCTCTCTCCTTCAACCTT
TCTCCATCCCACCCTTTCTTTCCTCTATTCCCTTCACTCCACCTCTCTCA
CCATCCTGCAGGGTACGTCCGAGACCAGGCAACCCTCACGAAGACTACAA
CGACGACGTAAACACTTCATTTGCACCTTACGGGCGTTGTGTGAGGGTAA
GAAAAAGGAGGAATTTAAACCGCGGAGGGGTGTAATTTCGAAGGTCTTCA
AAAGGGGGGGGCTAACGTGTCTACTGCTTCGACCACATCTCATGGAGGAT
ACCTTATAATTGCTTCGACTGAATGGTCTACCTCAACTTTAACATACATG
GGAGTAAATCCTACATTTTAGATAAACTGGTTACATAATTTTTAATGACC
CAAAAGAAGCAAAAGTATATTGGGGGGCTCTGCTTATAGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_19:61309..62403-

>mRNA_7254 ID=mRNA_7254|Name=jgi.p|Nanoce1779_2|128695|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_19:61309..62403- (Nannochloropsis oceanica)
ATGGCTCCTGTCCACAAGCGTCTGGTTACGGACAGCTTCTTAGCCCCCTG
CCCGCCACCCTCAAGCGCATATCAGCAATATCAGCTGCAGCAGCTGTTAC
TCGCCTCCCATCATCTCAAGCAGATACAGCAGCAGCAGCAGCAGCAGCAT
CAAAAGGTAGTGGAAGCGCTGGCCGTCATGCATAATGGTACACCCCTTTC
CCCCCGCCTTCTTCGTCCTCATGGACAAGAGCAACGACCACAACGACAAC
CGTACCAAACGCAACCGCAACTCCGGTCTCAGGCACTAAACGCTCTTTGC
TCTACTACACTCGTTCCTCGCCCTTCGTTCTCCTCCACCTCTTCCTCCTC
CACCGCTACATCCGCTGCCTTGCTATCTTTCCAGAACACCTCTACATGCA
CAGACCCAAACACAAAGACGACGACCACCACCACCACCAGCAGCAGTAGC
AGCAGCAGCAGTGCCAGCTCGTGCTTGGATCCTCTCTCCTTCAACCTTTC
TCCATCCCACCCTTTCTTTCCTCTATTCCCTTCACTCCACCTCTCTCACC
ATCCTGCAGGGTACGTCCGAGACCAGGCAACCCTCACGAAGACTACAACG
ACGACGTAA
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Synonyms
Publications