jgi.p|Nanoce1779_2|597985, mRNA_7253 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597985
Unique NamemRNA_7253
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length721
Alignment locationscaffold_19:59366..60086 -

Link to JBrowse

Properties
Property NameValue
TranscriptId598071
TrackFilteredModels2
ProteinId597985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:59366..60086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597985gene_7253Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597985mRNA_7253-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7253CDS_7253Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7253 ID=mRNA_7253|Name=jgi.p|Nanoce1779_2|597985|organism=Nannochloropsis oceanica|type=mRNA|length=721bp
CTACACGTCTGTCACGCCTGTGCCCGCAAGCACCGCTGCCAGCAAATGTT
TGCTTCATTGCGTGGAGCAGGTCAAGCACGGACGCCGCTACTTGCCCATT
TGCTTTCCCAGGCCATAGCAAGTGTGGTAGCCGATTTGTTTCTGAGGAGC
GCCCTGCTTCCTCTTCCTTCTGTTTTTGATAGAGGGGGTTTCCACTACAG
CCATTTTCCCAGTGGTTGGCCCCCCTTTTCACAGGGACACGACCAAGCAT
TCCGCCCTTCTGTTGCAGTGAGGTTGAAGGCCGAGAACCAAAAAATGTAA
ATGATTTGCTCATTGGCCAGCCTTTTGTGGTCTTAACTCCCCATGAGGTG
TAGATTAGACCAAACATTAAAAACGGGCATTGACTGAAGCTGATGCTCTT
GGAGAGCTGCATAGAGGCTCGCCTGCATATGTGCCCTTCCCCTCCCACCC
TTCCTCTAGACTGATCCAGTCAGGGACAAACATTCGCCACATAAAGGAAA
GGAAATGACATGTCAGGCTCAGGCCAGGGCTGACAGAATTCACTCAAGGA
CTTCAGTTGTCAGCCCTCTGGGTGCAACATATTCTGTTCCCTTCTCATGC
CATTCCCTCCCTTCCCTCCCTCCTTCCTTGAAGCATCAGACAGAGGCCAT
TTTGCCACGACGTCGCAATGTGCAGAGCGAGAGCAGCAACAGCAGCAGCA
GAAATCACGGTCATGACCCAG
back to top

protein sequence of jgi.p|Nanoce1779_2|597985

>mRNA_7253-protein ID=mRNA_7253-protein|Name=jgi.p|Nanoce1779_2|597985|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MFASLRGAGQARTPLLAHLLSQAIASVVADLFLRSALLPLPSVFDRGGFH
YSHFPSGWPPFSQGHDQAFRPSVAVRLKAENQKM*
back to top

mRNA from alignment at scaffold_19:59366..60086-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7253 ID=mRNA_7253|Name=jgi.p|Nanoce1779_2|597985|organism=Nannochloropsis oceanica|type=mRNA|length=721bp|location=Sequence derived from alignment at scaffold_19:59366..60086- (Nannochloropsis oceanica)
CTACACGTCTGTCACGCCTGTGCCCGCAAGCACCGCTGCCAGCAAATGTT
TGCTTCATTGCGTGGAGCAGGTCAAGCACGGACGCCGCTACTTGCCCATT
TGCTTTCCCAGGCCATAGCAAGTGTGGTAGCCGATTTGTTTCTGAGGAGC
GCCCTGCTTCCTCTTCCTTCTGTTTTTGATAGAGGGGGTTTCCACTACAG
CCATTTTCCCAGTGGTTGGCCCCCCTTTTCACAGGGACACGACCAAGCAT
TCCGCCCTTCTGTTGCAGTGAGGTTGAAGGCCGAGAACCAAAAAATGTAA
ATGATTTGCTCATTGGCCAGCCTTTTGTGGTCTTAACTCCCCATGAGGTG
TAGATTAGACCAAACATTAAAAACGGGCATTGACTGAAGCTGATGCTCTT
GGAGAGCTGCATAGAGGCTCGCCTGCATATGTGCCCTTCCCCTCCCACCC
TTCCTCTAGACTGATCCAGTCAGGGACAAACATTCGCCACATAAAGGAAA
GGAAATGACATGTCAGGCTCAGGCCAGGGCTGACAGAATTCACTCAAGGA
CTTCAGTTGTCAGCCCTCTGGGTGCAACATATTCTGTTCCCTTCTCATGC
CATTCCCTCCCTTCCCTCCCTCCTTCCTTGAAGCATCAGACAGAGGCCAT
TTTGCCACGACGTCGCAATGTGCAGAGCGAGAGCAGCAACAGCAGCAGCA
GAAATCACGGTCATGACCCAG
back to top

Coding sequence (CDS) from alignment at scaffold_19:59366..60086-

>mRNA_7253 ID=mRNA_7253|Name=jgi.p|Nanoce1779_2|597985|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_19:59366..60086- (Nannochloropsis oceanica)
ATGTTTGCTTCATTGCGTGGAGCAGGTCAAGCACGGACGCCGCTACTTGC
CCATTTGCTTTCCCAGGCCATAGCAAGTGTGGTAGCCGATTTGTTTCTGA
GGAGCGCCCTGCTTCCTCTTCCTTCTGTTTTTGATAGAGGGGGTTTCCAC
TACAGCCATTTTCCCAGTGGTTGGCCCCCCTTTTCACAGGGACACGACCA
AGCATTCCGCCCTTCTGTTGCAGTGAGGTTGAAGGCCGAGAACCAAAAAA
TGTAA
back to top
Synonyms
Publications