jgi.p|Nanoce1779_2|128522, mRNA_7251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|128522
Unique NamemRNA_7251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_19:46379..50293 +

Link to JBrowse

Properties
Property NameValue
TranscriptId128608
TrackFilteredModels2
ProteinId128522
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:46379..50293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128522gene_7251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128522mRNA_7251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7251CDS_7251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7251 ID=mRNA_7251|Name=jgi.p|Nanoce1779_2|128522|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
TCAAGCATCAATATTGGAATGATGCCTGGCTCCATTTTCACACGACCGCA
AACAACATACTAGCCTGGTTTACCAGTCTTCCCTTCTCTTATCCCATGAC
TACATCCTCCTCCTCCCCAACTCCCTGCCCCATCTCCTCTCCCTCCTTCA
TCTCCTCTTCACGAAGCATGTGCATCCCCTCCCTTCCCCTCTCCATCCTT
TTTCTCTTCCTCCTCCTACTCTTCTTCGACCCTCCCCTTCCTCTTCCTCC
CCTGAAGGCCACCGCTCAAGCATCTCCCCCCCCTCCTTCCACCACCTCAA
CCTCTTTTCCCTCCTCCTCTTCACCTCCATCTGCTCCTCCTCCTCCTCCT
CCTCCTCTCCCCCATCTGTTTCCTTCCACTGCTTCATTGCCCCCCCCACC
TCAAGGGACACGAAGTAACGAGAGAAAAAGAGAAAGAGGAGGAGAAGACG
GAGGGTGGAAAGGAAGGGAAAAGGCTTGGGAGGAAAACGAAGCTCGCCGC
TCTCCGGTCCTTGCTCAAACTCCGACGATCACGGAGAGGAGAAGGAATGA
AACTGGCGTAAAGACGTGGGATGGTCCGAATGTATAAATACAAAGCCTTC
TGTGTGTTTCCATCGATAATTAAACAAAGAACAAGTAACAGCTAACCCAA
AGCAAGAAAGCTATAGATCAAGTAAAACACA
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protein sequence of jgi.p|Nanoce1779_2|128522

>mRNA_7251-protein ID=mRNA_7251-protein|Name=jgi.p|Nanoce1779_2|128522|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MTTSSSSPTPCPISSPSFISSSRSMCIPSLPLSILFLFLLLLFFDPPLPL
PPLKATAQASPPPPSTTSTSFPSSSSPPSAPPPPPPPLPHLFPSTASLPP
PPQGTRSNERKRERGGEDGGWKGREKAWEENEARRSPVLAQTPTITERRR
NETGVKTWDGPNV*
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mRNA from alignment at scaffold_19:46379..50293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7251 ID=mRNA_7251|Name=jgi.p|Nanoce1779_2|128522|organism=Nannochloropsis oceanica|type=mRNA|length=3915bp|location=Sequence derived from alignment at scaffold_19:46379..50293+ (Nannochloropsis oceanica)
TCAAGCATCAATATTGGAATGATGCCTGGCTCCATTTTCACACGACCGCA
AACAACATACTAGCCTGGTTTACCAGTCTTCCCTTCTCTTATCCCATGAC
TACATCCTCCTCCTCCCCAACTCCCTGCCCCATCTCCTCTCCCTCCTTCA
TCTCCTCTTCACGAAGCATGTGCATCCCCTCCCTTCCCCTCTCCATCCTT
TTTCTCTTCCTCCTCCTACTCTTCTTCGACCCTCCCCTTCCTCTTCCTCC
CCTGAAGGCCACCGCTCAAGCATCTCCCCCCCCTCCTTCCACCACCTCAA
CCTCTTTTCCCTCCTCCTCTTCACCTCCATCTGCTCCTCCTCCTCCTCCT
CCTCCTCTCCCCCATCTGTTTCCTTCCACTGCTTCATTGCCCCCCCCACC
TCAAGGGACACGAAGTAACGAGAGAAAAAGAGAAAGAGGAGGAGAAGACG
GAGGGTGGAAAGGAAGGGAAAAGGCTTGGGAGGAAAACGAAGCTCGCCGC
TCTCCGGTCCTTGCTCAAACTCCGACGATCACAGAAGAAGGAGGAAAAGG
AGGAGGGAGAGAAAGATCAGGAGGACGAGGAAGGGAGGGAGGACGAGGAC
GAGGACGAGGACGAGGAGGCCGAGACGGAAGCGAGGAAGATCATGGAGGG
GGTGAGGAAAGAAGAAAGCGAGTGTGTTCGGGTGAGGGAGAGACTTGGCA
GTGGCAAGTTTTCTGAGGTAGGTAGGTGGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGATTGGCCTTCAGCCGTGGCGAATTTC
CCAAGGTGAGAAAAGGAGGGGAAGAGGAAGGGAAGGAGGGGGGGAAGGAC
TGATGCAAACCTTTCTTCCCACTCAAATACTTATTTATTCAGGTGTTTCT
CGCCCGTCTGGTGCGCTCCTCGTCTCGTGCTCCAGCTAGAGGGGGGGGTG
AAGGATCTTTTGTCGATGCTGGAGAAGAAAGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGAAGAAGAAGAAGAAGAAGAGGATAAGGAAGAAAAAGAAGA
AGATGCTGATGACGATGATGACGTCGTCGTGCTGAAAGTGTTGCGGCCTG
TCCCTCTTTGGCGCGTGGAGCGGGAGGGTAAAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GTATCTCGAATCAACTCTAATTTCCCTATTCCCTCTCTCTTGGATGTGCA
CAGGTTCGCATCTTGCAGTGGTTGCGGGGAGGGCCCAATATCATTGCACT
GAGAGGACGCACTTCGACATTCAGGTAGGTAGGGAGGGAAGGAGGGAGGA
AGGGAGGGAGCGAGGAAGGGAAAGAGGGCGCAAGGGAGAAAGGGAGAGGG
GAAAAGGAGGAAGGAGGGAATGGAGGGGAGGGAAAGAGAGAGGGAAGGAG
GGAAGGAGGGCGGGAGGGTTATATATTTTATCCGCTCACACACATTATAA
CTCTCTCTTTCATCTCTCACGCACTCATTCTGTTGATGTTTCTCGCTCTC
CTTCCTCTGTCCGCAGGCAAGCCCTCTTGTTGGAGTACTTAGGGCCAGAA
GCCCGGCCGCTAGGCCACGGGGAAGAAGGTACCTCCCTCCCTCCCCTCCT
CCTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCTCTTTTTGCT
TTCGCGCATTCACACTCCCCCCCCCCTTCCCTCTTTCCCCTCCCTTTCTC
CCTCCCTGCCTGTCTCAGATCTCTCCCTCTCTGAGATCCGCTTCTTCGTT
TTTGAGCTCTTGCGGGCGCTGGCCTGGACGCATGCGAGGGGTGTGATACA
CAGGTAGGGAGGTAGGGAGGGAGGGAGGTAGGTAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGAAAGGGACAGAGGAATACCCATTCTTATG
CTCCCCTCCTCCCTCCCTTCTTCCCTCTGCTCCTCCATCAGAGATGTGAA
AAACAAAAATGTCCTCATCAACACCAAGACAAAACAACTGCGGTACGTCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTT
GAATACCACACGTTCTCCCTCCCTCCCTCCCTCCCCCCCTCAGCCTGATT
GACTGGGGTAGTGCCGATGCTCACTCAGAAGGACAATCTCACAATGTCTT
CGTCTCCACGCGGAACTTCAAGGTGAGGGCGGGAGGGAGGGCGGGAGGGA
GGGTGGGAGGGAGGGCGGGAGCGAAAGTGTTCGAATATCAGGAGGCTGGA
CATCTCTCTTTCCCTTCCTGCCTCCCTCCCTCCCTCCCTCACTCCCAAAT
CCACCCTTGGACAACTATACCCATCCCGCTCCTCCCTCCCTCCCTCCTTC
CCTCCCTCCTTCAGCCTCCCGAGCTCTTGCTGCAGAATCCTTTTTATGGC
CCTCCAATCGACCTGTGGGGCGTCGGCTGTATCCTGGCCGGTAGGGAGGG
AGGGAGGGAGGGGGGGAGGGAGGGAGGGAGGGAGGGGAGGGATAGTCATA
ATGCACGCACAGAGGACATGCCTGATAAACACGTTCTTATCATAACACTC
TGAGTTTATATATGTATCTACATCTATATCTACATCTATATCTATATCTA
TATCTTACACACACATGTATATATACATGCATATACATATATATACATAT
ATATACTTTCACACACTGAGAATATCTCCGAATACACACACACTCTCTCT
TACACAAACACATACACACACATATATATACATGTACATGATATATACTT
ACACACAATGAGGTTACATCCGAATGGAAATAAACATACACATAAATACA
TACTATATCCATGAATAATACACTGAGGGCAGGCCTCCTCTTCAAGCGCG
AGCCATTCTTCCGTGGGGTCAACGACAGGTACGTGCCCGCCCTCCCCCCC
GTCCTCCCTCCCGCCCTCCCCCCCCACCCTCCAAATCCAGCAGCAGCGCA
AAAATATTTGTGGTGAACGTGAAAAAAAAATAAAAATTACAACGCTCATA
TGGCTCTGACACTCATCCCTCCATCCATTCCTCCCTCCCTCCCTCCCACA
GGGACCAGCTGCGGCGCGTGGCTTCAGTGTTGGGTTCGACGGGGCTTAAT
CAATACAAAGGCAAATGTGATATTCAACAGCAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAAGGGTAAGGAGAGA
GGGAGGAATGATTACCAAGGCAAAATGTGACATGCACCAGCAGGAGGAGG
AGAAGGAGAACGAGGAGGAAAGAAGGCGTGCGTGAAGAGGAGGAGGAGGA
GGAAGGCACCAGGCCCCTTCCTCGTCTACAAGAGCCGACATGTGTACGTT
TATTCGGCTTGGTTCACCTGTGCCCTCCCTCCCTCCCTCCCTTCTATCCT
CCCTCCCCAGCCCCCTTCCTCGCGAGCCCTGGTCCTCGTTCATTAATGAC
AAAAATCGACATTTGTGTTCGCCTGAAGCGCTGGACCTCCTCGACGGGCT
GCTGCGGTGAGGAAGGAGGGAGGGAGGGAGGGAGGGAAGATTGGGCCTTG
GAGCCTCACTTGACATACCCATACATGCCTTGATAACATTCACAGATACG
ATCAGAGCGAGCGGTTATCGGCAGCTGATGCCATGAAGCACTCCTTTTTT
GCAGAGATGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGAAGGGAGGGAGAGGAGAAGGAATGAAACTGGCGTAAAGACG
TGGGATGGTCCGAATGTATAAATACAAAGCCTTCTGTGTGTTTCCATCGA
TAATTAAACAAAGAACAAGTAACAGCTAACCCAAAGCAAGAAAGCTATAG
ATCAAGTAAAACACA
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Coding sequence (CDS) from alignment at scaffold_19:46379..50293+

>mRNA_7251 ID=mRNA_7251|Name=jgi.p|Nanoce1779_2|128522|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_19:46379..50293+ (Nannochloropsis oceanica)
ATGACTACATCCTCCTCCTCCCCAACTCCCTGCCCCATCTCCTCTCCCTC
CTTCATCTCCTCTTCACGAAGCATGTGCATCCCCTCCCTTCCCCTCTCCA
TCCTTTTTCTCTTCCTCCTCCTACTCTTCTTCGACCCTCCCCTTCCTCTT
CCTCCCCTGAAGGCCACCGCTCAAGCATCTCCCCCCCCTCCTTCCACCAC
CTCAACCTCTTTTCCCTCCTCCTCTTCACCTCCATCTGCTCCTCCTCCTC
CTCCTCCTCCTCTCCCCCATCTGTTTCCTTCCACTGCTTCATTGCCCCCC
CCACCTCAAGGGACACGAAGTAACGAGAGAAAAAGAGAAAGAGGAGGAGA
AGACGGAGGGTGGAAAGGAAGGGAAAAGGCTTGGGAGGAAAACGAAGCTC
GCCGCTCTCCGGTCCTTGCTCAAACTCCGACGATCACGGAGAGGAGAAGG
AATGAAACTGGCGTAAAGACGTGGGATGGTCCGAATGTATAAATGACTAC
ATCCTCCTCCTCCCCAACTCCCTGCCCCATCTCCTCTCCCTCCTTCATCT
CCTCTTCACGAAGCATGTGCATCCCCTCCCTTCCCCTCTCCATCCTTTTT
CTCTTCCTCCTCCTACTCTTCTTCGACCCTCCCCTTCCTCTTCCTCCCCT
GAAGGCCACCGCTCAAGCATCTCCCCCCCCTCCTTCCACCACCTCAACCT
CTTTTCCCTCCTCCTCTTCACCTCCATCTGCTCCTCCTCCTCCTCCTCCT
CCTCTCCCCCATCTGTTTCCTTCCACTGCTTCATTGCCCCCCCCACCTCA
AGGGACACGAAGTAACGAGAGAAAAAGAGAAAGAGGAGGAGAAGACGGAG
GGTGGAAAGGAAGGGAAAAGGCTTGGGAGGAAAACGAAGCTCGCCGCTCT
CCGGTCCTTGCTCAAACTCCGACGATCACGGAGAGGAGAAGGAATGAAAC
TGGCGTAAAGACGTGGGATGGTCCGAATGTATAA
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Synonyms
Publications