jgi.p|Nanoce1779_2|562607, mRNA_725 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|562607
Unique Name	mRNA_725
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2601
Alignment location	scaffold_2:292333..294933 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	562693
Track	FilteredModels2
ProteinId	562607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:292333..294933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562607	gene_725	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_725	CDS_725	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562607	mRNA_725-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:292333..294933-
coding sequence from alignment at scaffold_2:292333..294933-

mRNA sequence

>mRNA_725 ID=mRNA_725|Name=jgi.p|Nanoce1779_2|562607|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp
ATGGCTAGTTATTGGACAACGCTCGGCGAGGTCATTGCTGGCGGGGATAG
CGGGAAGCTTGTCGCTGAGGCGTGCCGATTGGATACCCTCCGATTAACAC
AATACCCGCTCTTGACGCTTCTGCAACGTCTGGTGATTCTGTGCTTGCCT
GTGGCCGGGAGTCCTTCTTGGAAGGCCAACATAATCTCGGCTATTTGCAC
GACTATGGCCGCTGGGTGCCTTTTCTTGTGCATTGTGGTGTTTGGGCAGG
CGCGGCATCGATGCTATCATCCCTCTATGTCTTCGAGCAATGATTCCCTT
GCAACAGCGACAAGTACGACGACATTGGTGGCTGCGGCTGCGGGTGCAGG
GCTTTTTGCGTGGTCGCCTTTGGTATGGCGATACGCAGTTTCAGCCGAGG
TCTTTGCTTTGAACAATGCTCTGCTGGCCCTTCTGCTATACACTACACTC
CGCTTTGCCTCCAGTTGGACATCTCAGGATAGGCGATTTTGGGCCTGCAC
CACTACATTGCTTTGTGGTCTGGCCCTGGCTAATCAGCATACGGCCATTC
TTGTTGAAGTACCGGTTGTGTTCTATTTGGCCTGGTGCCTGCGGCGCGAC
TTGGCGAGGCAGCCGAGCGGTATCATCATCGAGCTTGGGAGATGGTTTAT
TTTGGGCTTATTTCCATTGGTCTACGCACTCTTGAGTGTTTTGTGGCGCC
CTCAAATCGGCAGACTTGGCAACATGATAACATGGCAAGAAATATGGAGC
CAATTACGCCAGGGAGAATTCCCTGATTTACAACCAGCCTCAGATCCGGA
TGATGTAACCTATCGGGAGTCAGCTTACTGTTCGCAGGGTGCTTATGCGT
GGGATCTAATCTTGCGTCAGGGTCAATGGGGTTTGGTGCCTCTGCTGGCG
CTGTTGGGTTATGTCGCAGCCACGGTCTTTACGGCACCGTTCCTGTTACC
TCCGCGCTACAGGGGTGAACGAGCCAAGGTGACACGGGCAACGGACGGAT
ATATTCAGCAAATTCTTACAAATGTACCGGCTCCGCAACCACCATGCACG
CACACTAAGGATGCTCGAAGCCAAGGTCCCTACCACAAAGCCGAGGCAAA
GGCACGCCAAGAGAGTCACCACGTGATTTGGGCTCTTGGAGGAGCCTGGG
TCTTGTCTCTGTTTGCTTTTGACTTTTTCTCGCCAGAGCCACTGAATGAG
AGCGTTGAGTTGTCTTACAACATGATGGCGCGCTTCTGGATGCAAGCTAA
CTTGTTGGTCTTTATGTTGGCAGGCGTTGGTATGGATTGGCTGTCGTGTG
TGGTGGCGCGGGGGCAGTGGCAGGTGGGAAGACAACAGGATTCGCGATTT
TCGTTTAATCTGACGGCCTCATTGGCTCAGGCCGTATGCGTGGTTCTGGC
CTTGTGGCAATTTCAGCAGCACTTTGCGATGTCGGGCCAGTACGCCAACA
CCTACTCCGAAAAATATGCTCGGAGCTTGCTCGCGCCCTTACCGCCGGAT
TCGTTGCTACTCGTAAATCATAAATTGCAATGGAATTCGTTGCGGTACAT
GCAAAGCTGTAAGAACTACCGGCTGGACGTGACGATTCTAAAGTTGTCGC
TCATGAGCCTTCCATGGTGGCCGTCATTGGGCAGTCATCACAGTGGAAAA
GTTATTTTTCCCGGTACACACCACGTTCCAGAAAATCATTGCTTGGCGCG
CGGAGGCCAGGCTTTTGCCATGCATCAGTTTGTGGACGCCAATATCGACC
GGGTTGGGGGCATTTTTGTGGCAGGAAACCTGACATTTTCTCAGACCGAG
GAGCAGCTTCGATCTGTCTTTACAATGCTGCCGATGGGCTTGAACATGCA
GCTTTTTCGGCGCGAAGACGTGTGGACAATGAAAGAATGGCTCAAGCGAA
TCTTTGAAACATGGCATCTTCTTCAGCAGCACTCGCAAAACTTATTGTCA
CTTGCGGAGCTCCCTGCCCTTGATAAGTACCAGCGAGGGAAGTGGGAGTA
TGAAATCAGGCGCGACTATCTAGATCATTTGGCCGAGACTGCGGCGCACG
CGCTCGACGAAGCGATTGGGCACCAGAACCTTTACAACAGAAGTGCGGGA
GGAGGCAACGACGATATGACACACAGCCCCACAACGACCAAAATGTCCTC
CACGCTGGTGCTGAAGCATTTCTTGGATGCGGCATGGTGGCTTGAAGTGC
TAGTTGCACATGACCCTGAGCACACGACACACACACTAAATAACCTGGGC
TTGGCCTATTACCATCTTTTGTACCTCAGCCCCACGGTTTCCTTGGCGAC
CGCCGAGGCTCAATTGCGCCGTGTGCCCCGTGTTAGTCCCTTTAACGATG
CTTCCCTTGCCACCACTGCATCCCAGTGGTACCGGGGGCCTGGTCGCCAG
GAGACAGACTGGCGGATGTGGCTCTTGAATCGCCTAGAATACACTTGGGG
GACGTGTTTGACTCGTCCCGACGCTCAACAATTGCCTGAGGTAGGCAAAT
TGCAGCAGCAGCACAAAATGATTGTTGCCCGGATGCGACCACTTCTTGAG
AAAAAAGAGAATCTGGCTTCCAGGAAATTCAGAGGAGCCGATGATCCATA
G

protein sequence of jgi.p|Nanoce1779_2|562607

>mRNA_725-protein ID=mRNA_725-protein|Name=jgi.p|Nanoce1779_2|562607|organism=Nannochloropsis oceanica|type=polypeptide|length=867bp
MASYWTTLGEVIAGGDSGKLVAEACRLDTLRLTQYPLLTLLQRLVILCLP
VAGSPSWKANIISAICTTMAAGCLFLCIVVFGQARHRCYHPSMSSSNDSL
ATATSTTTLVAAAAGAGLFAWSPLVWRYAVSAEVFALNNALLALLLYTTL
RFASSWTSQDRRFWACTTTLLCGLALANQHTAILVEVPVVFYLAWCLRRD
LARQPSGIIIELGRWFILGLFPLVYALLSVLWRPQIGRLGNMITWQEIWS
QLRQGEFPDLQPASDPDDVTYRESAYCSQGAYAWDLILRQGQWGLVPLLA
LLGYVAATVFTAPFLLPPRYRGERAKVTRATDGYIQQILTNVPAPQPPCT
HTKDARSQGPYHKAEAKARQESHHVIWALGGAWVLSLFAFDFFSPEPLNE
SVELSYNMMARFWMQANLLVFMLAGVGMDWLSCVVARGQWQVGRQQDSRF
SFNLTASLAQAVCVVLALWQFQQHFAMSGQYANTYSEKYARSLLAPLPPD
SLLLVNHKLQWNSLRYMQSCKNYRLDVTILKLSLMSLPWWPSLGSHHSGK
VIFPGTHHVPENHCLARGGQAFAMHQFVDANIDRVGGIFVAGNLTFSQTE
EQLRSVFTMLPMGLNMQLFRREDVWTMKEWLKRIFETWHLLQQHSQNLLS
LAELPALDKYQRGKWEYEIRRDYLDHLAETAAHALDEAIGHQNLYNRSAG
GGNDDMTHSPTTTKMSSTLVLKHFLDAAWWLEVLVAHDPEHTTHTLNNLG
LAYYHLLYLSPTVSLATAEAQLRRVPRVSPFNDASLATTASQWYRGPGRQ
ETDWRMWLLNRLEYTWGTCLTRPDAQQLPEVGKLQQQHKMIVARMRPLLE
KKENLASRKFRGADDP*

mRNA from alignment at scaffold_2:292333..294933-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_725 ID=mRNA_725|Name=jgi.p|Nanoce1779_2|562607|organism=Nannochloropsis oceanica|type=mRNA|length=2601bp|location=Sequence derived from alignment at scaffold_2:292333..294933- (Nannochloropsis oceanica)
ATGGCTAGTTATTGGACAACGCTCGGCGAGGTCATTGCTGGCGGGGATAG
CGGGAAGCTTGTCGCTGAGGCGTGCCGATTGGATACCCTCCGATTAACAC
AATACCCGCTCTTGACGCTTCTGCAACGTCTGGTGATTCTGTGCTTGCCT
GTGGCCGGGAGTCCTTCTTGGAAGGCCAACATAATCTCGGCTATTTGCAC
GACTATGGCCGCTGGGTGCCTTTTCTTGTGCATTGTGGTGTTTGGGCAGG
CGCGGCATCGATGCTATCATCCCTCTATGTCTTCGAGCAATGATTCCCTT
GCAACAGCGACAAGTACGACGACATTGGTGGCTGCGGCTGCGGGTGCAGG
GCTTTTTGCGTGGTCGCCTTTGGTATGGCGATACGCAGTTTCAGCCGAGG
TCTTTGCTTTGAACAATGCTCTGCTGGCCCTTCTGCTATACACTACACTC
CGCTTTGCCTCCAGTTGGACATCTCAGGATAGGCGATTTTGGGCCTGCAC
CACTACATTGCTTTGTGGTCTGGCCCTGGCTAATCAGCATACGGCCATTC
TTGTTGAAGTACCGGTTGTGTTCTATTTGGCCTGGTGCCTGCGGCGCGAC
TTGGCGAGGCAGCCGAGCGGTATCATCATCGAGCTTGGGAGATGGTTTAT
TTTGGGCTTATTTCCATTGGTCTACGCACTCTTGAGTGTTTTGTGGCGCC
CTCAAATCGGCAGACTTGGCAACATGATAACATGGCAAGAAATATGGAGC
CAATTACGCCAGGGAGAATTCCCTGATTTACAACCAGCCTCAGATCCGGA
TGATGTAACCTATCGGGAGTCAGCTTACTGTTCGCAGGGTGCTTATGCGT
GGGATCTAATCTTGCGTCAGGGTCAATGGGGTTTGGTGCCTCTGCTGGCG
CTGTTGGGTTATGTCGCAGCCACGGTCTTTACGGCACCGTTCCTGTTACC
TCCGCGCTACAGGGGTGAACGAGCCAAGGTGACACGGGCAACGGACGGAT
ATATTCAGCAAATTCTTACAAATGTACCGGCTCCGCAACCACCATGCACG
CACACTAAGGATGCTCGAAGCCAAGGTCCCTACCACAAAGCCGAGGCAAA
GGCACGCCAAGAGAGTCACCACGTGATTTGGGCTCTTGGAGGAGCCTGGG
TCTTGTCTCTGTTTGCTTTTGACTTTTTCTCGCCAGAGCCACTGAATGAG
AGCGTTGAGTTGTCTTACAACATGATGGCGCGCTTCTGGATGCAAGCTAA
CTTGTTGGTCTTTATGTTGGCAGGCGTTGGTATGGATTGGCTGTCGTGTG
TGGTGGCGCGGGGGCAGTGGCAGGTGGGAAGACAACAGGATTCGCGATTT
TCGTTTAATCTGACGGCCTCATTGGCTCAGGCCGTATGCGTGGTTCTGGC
CTTGTGGCAATTTCAGCAGCACTTTGCGATGTCGGGCCAGTACGCCAACA
CCTACTCCGAAAAATATGCTCGGAGCTTGCTCGCGCCCTTACCGCCGGAT
TCGTTGCTACTCGTAAATCATAAATTGCAATGGAATTCGTTGCGGTACAT
GCAAAGCTGTAAGAACTACCGGCTGGACGTGACGATTCTAAAGTTGTCGC
TCATGAGCCTTCCATGGTGGCCGTCATTGGGCAGTCATCACAGTGGAAAA
GTTATTTTTCCCGGTACACACCACGTTCCAGAAAATCATTGCTTGGCGCG
CGGAGGCCAGGCTTTTGCCATGCATCAGTTTGTGGACGCCAATATCGACC
GGGTTGGGGGCATTTTTGTGGCAGGAAACCTGACATTTTCTCAGACCGAG
GAGCAGCTTCGATCTGTCTTTACAATGCTGCCGATGGGCTTGAACATGCA
GCTTTTTCGGCGCGAAGACGTGTGGACAATGAAAGAATGGCTCAAGCGAA
TCTTTGAAACATGGCATCTTCTTCAGCAGCACTCGCAAAACTTATTGTCA
CTTGCGGAGCTCCCTGCCCTTGATAAGTACCAGCGAGGGAAGTGGGAGTA
TGAAATCAGGCGCGACTATCTAGATCATTTGGCCGAGACTGCGGCGCACG
CGCTCGACGAAGCGATTGGGCACCAGAACCTTTACAACAGAAGTGCGGGA
GGAGGCAACGACGATATGACACACAGCCCCACAACGACCAAAATGTCCTC
CACGCTGGTGCTGAAGCATTTCTTGGATGCGGCATGGTGGCTTGAAGTGC
TAGTTGCACATGACCCTGAGCACACGACACACACACTAAATAACCTGGGC
TTGGCCTATTACCATCTTTTGTACCTCAGCCCCACGGTTTCCTTGGCGAC
CGCCGAGGCTCAATTGCGCCGTGTGCCCCGTGTTAGTCCCTTTAACGATG
CTTCCCTTGCCACCACTGCATCCCAGTGGTACCGGGGGCCTGGTCGCCAG
GAGACAGACTGGCGGATGTGGCTCTTGAATCGCCTAGAATACACTTGGGG
GACGTGTTTGACTCGTCCCGACGCTCAACAATTGCCTGAGGTAGGCAAAT
TGCAGCAGCAGCACAAAATGATTGTTGCCCGGATGCGACCACTTCTTGAG
AAAAAAGAGAATCTGGCTTCCAGGAAATTCAGAGGAGCCGATGATCCATA
G

Coding sequence (CDS) from alignment at scaffold_2:292333..294933-

>mRNA_725 ID=mRNA_725|Name=jgi.p|Nanoce1779_2|562607|organism=Nannochloropsis oceanica|type=CDS|length=2601bp|location=Sequence derived from alignment at scaffold_2:292333..294933- (Nannochloropsis oceanica)
ATGGCTAGTTATTGGACAACGCTCGGCGAGGTCATTGCTGGCGGGGATAG
CGGGAAGCTTGTCGCTGAGGCGTGCCGATTGGATACCCTCCGATTAACAC
AATACCCGCTCTTGACGCTTCTGCAACGTCTGGTGATTCTGTGCTTGCCT
GTGGCCGGGAGTCCTTCTTGGAAGGCCAACATAATCTCGGCTATTTGCAC
GACTATGGCCGCTGGGTGCCTTTTCTTGTGCATTGTGGTGTTTGGGCAGG
CGCGGCATCGATGCTATCATCCCTCTATGTCTTCGAGCAATGATTCCCTT
GCAACAGCGACAAGTACGACGACATTGGTGGCTGCGGCTGCGGGTGCAGG
GCTTTTTGCGTGGTCGCCTTTGGTATGGCGATACGCAGTTTCAGCCGAGG
TCTTTGCTTTGAACAATGCTCTGCTGGCCCTTCTGCTATACACTACACTC
CGCTTTGCCTCCAGTTGGACATCTCAGGATAGGCGATTTTGGGCCTGCAC
CACTACATTGCTTTGTGGTCTGGCCCTGGCTAATCAGCATACGGCCATTC
TTGTTGAAGTACCGGTTGTGTTCTATTTGGCCTGGTGCCTGCGGCGCGAC
TTGGCGAGGCAGCCGAGCGGTATCATCATCGAGCTTGGGAGATGGTTTAT
TTTGGGCTTATTTCCATTGGTCTACGCACTCTTGAGTGTTTTGTGGCGCC
CTCAAATCGGCAGACTTGGCAACATGATAACATGGCAAGAAATATGGAGC
CAATTACGCCAGGGAGAATTCCCTGATTTACAACCAGCCTCAGATCCGGA
TGATGTAACCTATCGGGAGTCAGCTTACTGTTCGCAGGGTGCTTATGCGT
GGGATCTAATCTTGCGTCAGGGTCAATGGGGTTTGGTGCCTCTGCTGGCG
CTGTTGGGTTATGTCGCAGCCACGGTCTTTACGGCACCGTTCCTGTTACC
TCCGCGCTACAGGGGTGAACGAGCCAAGGTGACACGGGCAACGGACGGAT
ATATTCAGCAAATTCTTACAAATGTACCGGCTCCGCAACCACCATGCACG
CACACTAAGGATGCTCGAAGCCAAGGTCCCTACCACAAAGCCGAGGCAAA
GGCACGCCAAGAGAGTCACCACGTGATTTGGGCTCTTGGAGGAGCCTGGG
TCTTGTCTCTGTTTGCTTTTGACTTTTTCTCGCCAGAGCCACTGAATGAG
AGCGTTGAGTTGTCTTACAACATGATGGCGCGCTTCTGGATGCAAGCTAA
CTTGTTGGTCTTTATGTTGGCAGGCGTTGGTATGGATTGGCTGTCGTGTG
TGGTGGCGCGGGGGCAGTGGCAGGTGGGAAGACAACAGGATTCGCGATTT
TCGTTTAATCTGACGGCCTCATTGGCTCAGGCCGTATGCGTGGTTCTGGC
CTTGTGGCAATTTCAGCAGCACTTTGCGATGTCGGGCCAGTACGCCAACA
CCTACTCCGAAAAATATGCTCGGAGCTTGCTCGCGCCCTTACCGCCGGAT
TCGTTGCTACTCGTAAATCATAAATTGCAATGGAATTCGTTGCGGTACAT
GCAAAGCTGTAAGAACTACCGGCTGGACGTGACGATTCTAAAGTTGTCGC
TCATGAGCCTTCCATGGTGGCCGTCATTGGGCAGTCATCACAGTGGAAAA
GTTATTTTTCCCGGTACACACCACGTTCCAGAAAATCATTGCTTGGCGCG
CGGAGGCCAGGCTTTTGCCATGCATCAGTTTGTGGACGCCAATATCGACC
GGGTTGGGGGCATTTTTGTGGCAGGAAACCTGACATTTTCTCAGACCGAG
GAGCAGCTTCGATCTGTCTTTACAATGCTGCCGATGGGCTTGAACATGCA
GCTTTTTCGGCGCGAAGACGTGTGGACAATGAAAGAATGGCTCAAGCGAA
TCTTTGAAACATGGCATCTTCTTCAGCAGCACTCGCAAAACTTATTGTCA
CTTGCGGAGCTCCCTGCCCTTGATAAGTACCAGCGAGGGAAGTGGGAGTA
TGAAATCAGGCGCGACTATCTAGATCATTTGGCCGAGACTGCGGCGCACG
CGCTCGACGAAGCGATTGGGCACCAGAACCTTTACAACAGAAGTGCGGGA
GGAGGCAACGACGATATGACACACAGCCCCACAACGACCAAAATGTCCTC
CACGCTGGTGCTGAAGCATTTCTTGGATGCGGCATGGTGGCTTGAAGTGC
TAGTTGCACATGACCCTGAGCACACGACACACACACTAAATAACCTGGGC
TTGGCCTATTACCATCTTTTGTACCTCAGCCCCACGGTTTCCTTGGCGAC
CGCCGAGGCTCAATTGCGCCGTGTGCCCCGTGTTAGTCCCTTTAACGATG
CTTCCCTTGCCACCACTGCATCCCAGTGGTACCGGGGGCCTGGTCGCCAG
GAGACAGACTGGCGGATGTGGCTCTTGAATCGCCTAGAATACACTTGGGG
GACGTGTTTGACTCGTCCCGACGCTCAACAATTGCCTGAGGTAGGCAAAT
TGCAGCAGCAGCACAAAATGATTGTTGCCCGGATGCGACCACTTCTTGAG
AAAAAAGAGAATCTGGCTTCCAGGAAATTCAGAGGAGCCGATGATCCATA
G

Synonyms

Publications