jgi.p|Nanoce1779_2|597953, mRNA_7246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597953
Unique NamemRNA_7246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1159
Alignment locationscaffold_19:20932..22335 +

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Properties
Property NameValue
TranscriptId598039
TrackFilteredModels2
ProteinId597953
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:20932..22335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597953gene_7246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597953mRNA_7246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7246CDS_7246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7246 ID=mRNA_7246|Name=jgi.p|Nanoce1779_2|597953|organism=Nannochloropsis oceanica|type=mRNA|length=1159bp
ACAGCTAGGCATCCAACCAGAGGCCGTGTCCGCATTTCACCATGCCCCGC
CCCTCCACCACCACTCCCTCCATCCTCCTGGTCCTACTCCTCCTCGCCCT
TTCCCTTATTCTCTCTCCCGCCCTGGAAACCAAGGACTTCAAAGCCGCCG
CCGGTGCCGCTGTAGATGCTGTAGAAGACGCTGCAGCAGCGGCAGGCCAC
GCCGCCTCGGACCTTCTCCACTCTGCGGAAGCCGCGGTGGGAGACACGCT
AGAAGCCATCGAGTCGGCCATTGCTCCTTCCGAGGAAGCATCCTCGTCCC
TGAATATGGTCTACTTCGGGATGCCCTTTAAGATAGACGACATCGATTTC
AGCCAAGGAGAGACGGGCACCACCGTCGATGGGCTCAAGGCCAAGATCGA
GAAGGAGTACAACATCCCAGCCAGCGAGCAGATGATTGTTCATGATGGGG
TGCTCTTGACCAACGCGGTGAAGCTTGCCTCGAAGAATATCGAGCCCGGC
ACCACGCTTGAAGTCAGGCACAAAATCGCCATCAAGGAGGGCACGAAGAT
GCCCATGGACAAGCAGGGCTTCACTCCCGAGGAGATGAAGGAGCTTTTCA
ACATCGATCTCGCCAGCTTTCGCGCAATTTGGGAGGTCAAGTCGGAGGCA
GGGAGGGAGCTCTTGAAGGAAGGCAAGGCCCTCATGAAGGAGAAGAGAAA
CGTATTGACAGCCCTCGTGAAGAAACTCGGGGCTTTTTTCCAGGGGTTGG
GCAGGAAGGTGAAGGAGGGGGCGAGGAAAGTCCTGAACGTGTTTGGAGGG
TTGAGGAAGGGAGGGAAGAAGAAGGCAGAACTCTAGAGCGTTTTTTTTGG
GGTGGCCACCCTCCCTCCCTCCCTGCTTTCCACTTTCTTTCCCTCCCTTT
CTTGGTTCCTGCCTTCCTGTCTCTTTCTGAAAGCTGATTGACTTTCAGAA
GAAAGAGTGGAATGAGGTTGAAGAGACGAGGAGGGAAGAGGGAAAGAAGG
AGGGAGGGGTGACTGCATGCAGCGAAGGACGGAAGCGGGCGAAACATGAT
AATTTAAGAAAGATGAAAAAAGAAGAAAAAAAAAAAAAAGCAGGGGAAGG
TTCAAAAAGAAGAAGAGAAAGTTGAAGAGGAGGAAAAAGAAGACGAAGGA
ATACAATTA
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protein sequence of jgi.p|Nanoce1779_2|597953

>mRNA_7246-protein ID=mRNA_7246-protein|Name=jgi.p|Nanoce1779_2|597953|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MPRPSTTTPSILLVLLLLALSLILSPALETKDFKAAAGAAVDAVEDAAAA
AGHAASDLLHSAEAAVGDTLEAIESAIAPSEEASSSLNMVYFGMPFKIDD
IDFSQGETGTTVDGLKAKIEKEYNIPASEQMIVHDGVLLTNAVKLASKNI
EPGTTLEVRHKIAIKEGTKMPMDKQGFTPEEMKELFNIDLASFRAIWEVK
SEAGRELLKEGKALMKEKRNVLTALVKKLGAFFQGLGRKVKEGARKVLNV
FGGLRKGGKKKAEL*
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mRNA from alignment at scaffold_19:20932..22335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7246 ID=mRNA_7246|Name=jgi.p|Nanoce1779_2|597953|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at scaffold_19:20932..22335+ (Nannochloropsis oceanica)
ACAGCTAGGCATCCAACCAGAGGCCGTGTCCGCATTTCACCATGCCCCGC
CCCTCCACCACCACTCCCTCCATCCTCCTGGTCCTACTCCTCCTCGCCCT
TTCCCTTATTCTCTCTCCCGCCCTGGAAACCAAGGACTTCAAAGCCGCCG
CCGGTGCCGCTGTAGATGCTGTAGAAGACGCTGCAGCAGCGGCAGGCCAC
GCCGCCTCGGACCTTCTCCACTCTGCGGAAGCCGCGGTGGGAGACACGCT
AGAAGCCATCGAGTCGGCCATTGCTCCTTCCGAGGAAGCATCCTCGTCCC
TGAATATGGTCTACTTCGGGATGCCCTTTAAGATAGACGACATCGATTTC
AGCCAAGGAGAGACGGGCACCACCGTCGATGGGCTCAAGGCCAAGATCGA
GAAGGAGTACAACATCCCAGCCAGCGAGCAGGTAGGTTAGTGGGTGTGAT
TTACCCTTCCACTCTTCCTCCCCCTCTCTCTTCCTCCATTCTCCCCAATT
TACCCTCTCCTGTCCGCCTTTTCAGACGATTGAGGGCTCACCCTCCTCTC
TCTCTCCCTCCTTTTCTCCCGCCCCATAGATGATTGTTCATGATGGGGTG
CTCTTGACCAACGCGGTGAAGCTTGCCTCGAAGAATATCGAGCCCGGCAC
CACGCTTGAAGTCAGGTAAGCAAGACAGTAATCTGTACCTATTTTTGTTG
TGTGTGTTTTTTTCTATTTTCAATGATGCAAAAATAAATATTCATTTTTA
TCGATTCCACAGGCACAAAATCGCCATCAAGGAGGGCACGAAGATGCCCA
TGGACAAGCAGGGCTTCACTCCCGAGGAGATGAAGGAGCTTTTCAACATC
GATCTCGCCAGCTTTCGCGCAATTTGGGAGGTCAAGTCGGAGGCAGGGAG
GGAGCTCTTGAAGGAAGGCAAGGCCCTCATGAAGGAGAAGAGAAACGTAT
TGACAGCCCTCGTGAAGAAACTCGGGGCTTTTTTCCAGGGGTTGGGCAGG
AAGGTGAAGGAGGGGGCGAGGAAAGTCCTGAACGTGTTTGGAGGGTTGAG
GAAGGGAGGGAAGAAGAAGGCAGAACTCTAGAGCGTTTTTTTTGGGGTGG
CCACCCTCCCTCCCTCCCTGCTTTCCACTTTCTTTCCCTCCCTTTCTTGG
TTCCTGCCTTCCTGTCTCTTTCTGAAAGCTGATTGACTTTCAGAAGAAAG
AGTGGAATGAGGTTGAAGAGACGAGGAGGGAAGAGGGAAAGAAGGAGGGA
GGGGTGACTGCATGCAGCGAAGGACGGAAGCGGGCGAAACATGATAATTT
AAGAAAGATGAAAAAAGAAGAAAAAAAAAAAAAAGCAGGGGAAGGTTCAA
AAAGAAGAAGAGAAAGTTGAAGAGGAGGAAAAAGAAGACGAAGGAATACA
ATTA
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Coding sequence (CDS) from alignment at scaffold_19:20932..22335+

>mRNA_7246 ID=mRNA_7246|Name=jgi.p|Nanoce1779_2|597953|organism=Nannochloropsis oceanica|type=CDS|length=2385bp|location=Sequence derived from alignment at scaffold_19:20932..22335+ (Nannochloropsis oceanica)
ATGCCCCGCCCCTCCACCACCACTCCCTCCATCCTCCTGGTCCTACTCCT
CCTCGCCCTTTCCCTTATTCTCTCTCCCGCCCTGGAAACCAAGGACTTCA
AAGCCGCCGCCGGTGCCGCTGTAGATGCTGTAGAAGACGCTGCAGCAGCG
GCAGGCCACGCCGCCTCGGACCTTCTCCACTCTGCGGAAGCCGCGGTGGG
AGACACGCTAGAAGCCATCGAGTCGGCCATTGCTCCTTCCGAGGAAGCAT
CCTCGTCCCTGAATATGGTCTACTTCGGGATGCCCTTTAAGATAGACGAC
ATCGATTTCAGCCAAGGAGAGACGGGCACCACCGTCGATGGGCTCAAGGC
CAAGATCGAGAAGGAGTACAACATCCCAGCCAGCGAGCAGATGATTGTTC
ATGATGGGGTGCTCTTGACCAACGCGGTGAAGCTTGCCTCGAAGAATATC
GAGCCCGGCACCACGCTTGAAGTCAGGCACAAAATCGCCATCAAGGAGGG
CACGAAGATGCCCATGGACAAGCAGGGCTTCACTCCCGAGGAGATGAAGG
AGCTTTTCAACATCGATCTCGCCAGCTTTCGCGCAATTTGGGAGGTCAAG
TCGGAGGCAGGGAGGGAGCTCTTGAAGGAAGGCAAGGCCCTCATGAAGGA
GAAGAGAAACGTATTGACAGCCCTCGTGAAGAAACTCGGGGCTTTTTTCC
AGGGGTTGGGCAGGAAGGTGAAGGAGGGGGCGAGGAAAGTCCTGAACGTG
TTTGGAGGGTTGAGGAAGGGAGGGAAGAAGAAGGCAGAACTCTAGATGCC
CCGCCCCTCCACCACCACTCCCTCCATCCTCCTGGTCCTACTCCTCCTCG
CCCTTTCCCTTATTCTCTCTCCCGCCCTGGAAACCAAGGACTTCAAAGCC
GCCGCCGGTGCCGCTGTAGATGCTGTAGAAGACGCTGCAGCAGCGGCAGG
CCACGCCGCCTCGGACCTTCTCCACTCTGCGGAAGCCGCGGTGGGAGACA
CGCTAGAAGCCATCGAGTCGGCCATTGCTCCTTCCGAGGAAGCATCCTCG
TCCCTGAATATGGTCTACTTCGGGATGCCCTTTAAGATAGACGACATCGA
TTTCAGCCAAGGAGAGACGGGCACCACCGTCGATGGGCTCAAGGCCAAGA
TCGAGAAGGAGTACAACATCCCAGCCAGCGAGCAGATGATTGTTCATGAT
GGGGTGCTCTTGACCAACGCGGTGAAGCTTGCCTCGAAGAATATCGAGCC
CGGCACCACGCTTGAAGTCAGGCACAAAATCGCCATCAAGGAGGGCACGA
AGATGCCCATGGACAAGCAGGGCTTCACTCCCGAGGAGATGAAGGAGCTT
TTCAACATCGATCTCGCCAGCTTTCGCGCAATTTGGGAGGTCAAGTCGGA
GGCAGGGAGGGAGCTCTTGAAGGAAGGCAAGGCCCTCATGAAGGAGAAGA
GAAACGTATTGACAGCCCTCGTGAAGAAACTCGGGGCTTTTTTCCAGGGG
TTGGGCAGGAAGGTGAAGGAGGGGGCGAGGAAAGTCCTGAACGTGTTTGG
AGGGTTGAGGAAGGGAGGGAAGAAGAAGGCAGAACTCTAGATGCCCCGCC
CCTCCACCACCACTCCCTCCATCCTCCTGGTCCTACTCCTCCTCGCCCTT
TCCCTTATTCTCTCTCCCGCCCTGGAAACCAAGGACTTCAAAGCCGCCGC
CGGTGCCGCTGTAGATGCTGTAGAAGACGCTGCAGCAGCGGCAGGCCACG
CCGCCTCGGACCTTCTCCACTCTGCGGAAGCCGCGGTGGGAGACACGCTA
GAAGCCATCGAGTCGGCCATTGCTCCTTCCGAGGAAGCATCCTCGTCCCT
GAATATGGTCTACTTCGGGATGCCCTTTAAGATAGACGACATCGATTTCA
GCCAAGGAGAGACGGGCACCACCGTCGATGGGCTCAAGGCCAAGATCGAG
AAGGAGTACAACATCCCAGCCAGCGAGCAGATGATTGTTCATGATGGGGT
GCTCTTGACCAACGCGGTGAAGCTTGCCTCGAAGAATATCGAGCCCGGCA
CCACGCTTGAAGTCAGGCACAAAATCGCCATCAAGGAGGGCACGAAGATG
CCCATGGACAAGCAGGGCTTCACTCCCGAGGAGATGAAGGAGCTTTTCAA
CATCGATCTCGCCAGCTTTCGCGCAATTTGGGAGGTCAAGTCGGAGGCAG
GGAGGGAGCTCTTGAAGGAAGGCAAGGCCCTCATGAAGGAGAAGAGAAAC
GTATTGACAGCCCTCGTGAAGAAACTCGGGGCTTTTTTCCAGGGGTTGGG
CAGGAAGGTGAAGGAGGGGGCGAGGAAAGTCCTGAACGTGTTTGGAGGGT
TGAGGAAGGGAGGGAAGAAGAAGGCAGAACTCTAG
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Synonyms
Publications