jgi.p|Nanoce1779_2|597929, mRNA_7242 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597929
Unique NamemRNA_7242
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1035
Alignment locationscaffold_19:3148..4972 -

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Properties
Property NameValue
TranscriptId598015
TrackFilteredModels2
ProteinId597929
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:3148..4972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597929gene_7242Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597929mRNA_7242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7242CDS_7242Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7242 ID=mRNA_7242|Name=jgi.p|Nanoce1779_2|597929|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp
ACAGGCCAAGGCCTTAAACTGCTTACAAAGCTCCTTTGCTCCTCCTCCTG
TCCTTCTTCTCGACCCCACCAGGCCGACAAGAGACAAGACAAAGAACACA
ACCAAAGAAACGATGCAACAGCAACAGGGCAAGAGTAGCAAAAGTATGGA
CATTGACGGCGCACCAGTCGCCCAGATCATGGAAGATGCGCCAGCCGTGT
CATCAAAGGAAGAAGAAATGGACATCGACGCCTTGACCCAAGGTGGTGGA
TGTGGTGGTAGGGTAAAGACGGAAGGAGGGAGGGGAAGAAGGGGAGGAGG
GAGGGCTGCTTTTGATGATCACGGGTTTTCACACTCACAAGCGTTCGCTT
AATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGACGAAGGACC
CCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCCAGTGGAAAG
ATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTGCTTGCTCGCC
TTCTTTGTGCCGTGCTGCGCTTTGGCCATTCTCTCCAAGCGCATGGGTTA
CGCCTCCTATCAGACTGTGTTTTGGGGGCTTTTAGTCCTCTTCGTCGTCA
CCTGTCTCTTCGGCGTGGCTTTCATCTACTCTCTCGCTGTCTTTACGATA
ACATTCCAAATACTTCTTATCGTCCGGGCCAAGCTGGGTCTGCCGGCTCT
CTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGGCGACTGCATCG
CTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGATGCGGCACCTC
TTCAATTACAAGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGT
GAGCTTCGTATGAGTTGACTGCTAAGTTCTTTGGTACGATTAAATATGTG
GATTGAACCTCATAGGCATGATTTCATAATTAGATTGGACCTCTCTCTGC
CCTATCATTTCTCCTGCGCTCCCTTCCTCCCGCCCGCCCTCCCGCCCTCC
CTCAGCGTTGGCGAAGAAGAGATTGTGGCCTTGTT
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protein sequence of jgi.p|Nanoce1779_2|597929

>mRNA_7242-protein ID=mRNA_7242-protein|Name=jgi.p|Nanoce1779_2|597929|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MITGFHTHKRSLNFSLPVSLRPLISDEGPLPAATEGYQPQEGQWKDHCFN
CFSQINPSCLLAFFVPCCALAILSKRMGYASYQTVFWGLLVLFVVTCLFG
VAFIYSLAVFTITFQILLIVRAKLGLPALCGKKKDGCVAIMGDCIASFFC
TPCVTARMMRHLFNYKKRWDSCIGEEEVVSFV*
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mRNA from alignment at scaffold_19:3148..4972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7242 ID=mRNA_7242|Name=jgi.p|Nanoce1779_2|597929|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_19:3148..4972- (Nannochloropsis oceanica)
ACAGGCCAAGGCCTTAAACTGCTTACAAAGCTCCTTTGCTCCTCCTCCTG
TCCTTCTTCTCGACCCCACCAGGCCGACAAGAGACAAGACAAAGAACACA
ACCAAAGAAACGATGCAACAGCAACAGGGCAAGAGTAGCAAAAGTATGGA
CATTGACGGCGCACCAGTCGCCCAGATCATGGAAGATGCGCCAGCCGTGT
CATCAAAGGAAGAAGAAATGGACATCGACGCCTTGACCCAAGGTGGTGGA
TGTGGTGGTAGGGTAAAGACGGAAGGAGGGAGGGGAAGAAGGGGAGGAGG
GAGGGCTGCTTTTGATGATCACGGGTTTTCACACTCACAAGCGTTCGCTT
AATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGACGAAGGACC
CCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCCAGTGGAAAG
ATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTGTACGTACATC
GGGAGGGAGAGAGAGGGTGAAGGTGGGATGACGGGTGAACATTTTTACCT
GCTAGATTATCACCGCAGGAACACGGCCACATGGAAGAAAGGGAGACTGG
TACTTACCCTAGCTTTCTTCCGCGCCACACAATTACTATCTATACATACA
TACATACAGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTGGCCATT
CTCTCCAAGCGCATGGGGTAAGTCCTTCCTCGCCCTTTTCCTCCCACCCT
CCCGCCAACCCTCCCTCCCTCTCTCCCTCCATCCACTCCTCCATCCCTAG
TTACGCCTCCTATCAGACTGTGTTTTGGGGGCTTTTAGTCCTCTTCGTCG
TCACCTGTCTCTTCGGCGTGGCTTTCATCTACTCTCTCGCTGTCTTTACG
ATAACATTCCAAATACTTCTTATCGTCCGGGCCAAGCTGGGTCTGCCGGT
AGGCTCGCCCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCT
TCCTTTCTCTCTTTCTTCCTTCCTCTTCTTTTTTTTTTCCCGTCTTTCTA
TTCTCTCGTGATTCTCTTTCAAGGGAAAGAGAATTTCTCACGAGCTTATT
CTCCCTCACAAACACACCGTCTCTCCCCCCCCTTCCCTCCCTCCCTCCCT
CAGGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGGCGA
CTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGATGC
GGCACCTCTTCAATGTACGAGCCAGCCCTCCCTCCCTCCCCCCTTCCCTC
CCTCCCTCGTTTTCCTGTCAGCCATTTTCTTGACCCACGGCACGTTAGAT
TTCAAATTTGATTTCCCCCTCCCTTTCACGTCTATCTCACGATGTTTCTA
TGCTCCTATCCGCCGAGGGGAAGGCGTGATTGCCTGCGGTTGAATATGCG
TTTCATCCGGGCCGTCTGTTGACGACCGAATGGCCACCGCCGCACCCCTT
TATGCCAACGCCGCACCACAATCAGCACCATCTACGCCAATACCTCACAG
AACTACCTCTCGGAACTCTCCCTCCCTCCCTCCCTTCCTCCCTCAGTACA
AGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCGTA
TGAGTTGACTGCTAAGTTCTTTGGTACGATTAAATATGTGGATTGAACCT
CATAGGCATGATTTCATAATTAGATTGGACCTCTCTCTGCCCTATCATTT
CTCCTGCGCTCCCTTCCTCCCGCCCGCCCTCCCGCCCTCCCTCAGCGTTG
GCGAAGAAGAGATTGTGGCCTTGTT
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Coding sequence (CDS) from alignment at scaffold_19:3148..4972-

>mRNA_7242 ID=mRNA_7242|Name=jgi.p|Nanoce1779_2|597929|organism=Nannochloropsis oceanica|type=CDS|length=2745bp|location=Sequence derived from alignment at scaffold_19:3148..4972- (Nannochloropsis oceanica)
TACAAGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTT
CGTATGAGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGG
GCGACTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATG
ATGCGGCACCTCTTCAATTTACGCCTCCTATCAGACTGTGTTTTGGGGGC
TTTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCATCTAC
TCTCTCGCTGTCTTTACGATAACATTCCAAATACTTCTTATCGTCCGGGC
CAAGCTGGGTCTGCCGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTT
GGCCATTCTCTCCAAGCGCATGGGATGATCACGGGTTTTCACACTCACAA
GCGTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAG
ACGAAGGACCCCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGC
CAGTGGAAAGATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTT
ACAAGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTC
GTATGAGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGG
CGACTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGA
TGCGGCACCTCTTCAATTTACGCCTCCTATCAGACTGTGTTTTGGGGGCT
TTTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCATCTACT
CTCTCGCTGTCTTTACGATAACATTCCAAATACTTCTTATCGTCCGGGCC
AAGCTGGGTCTGCCGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTG
GCCATTCTCTCCAAGCGCATGGGATGATCACGGGTTTTCACACTCACAAG
CGTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGA
CGAAGGACCCCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCC
AGTGGAAAGATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTTA
CAAGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCG
TATGAGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGGC
GACTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGAT
GCGGCACCTCTTCAATTTACGCCTCCTATCAGACTGTGTTTTGGGGGCTT
TTAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCATCTACTC
TCTCGCTGTCTTTACGATAACATTCCAAATACTTCTTATCGTCCGGGCCA
AGCTGGGTCTGCCGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTGG
CCATTCTCTCCAAGCGCATGGGATGATCACGGGTTTTCACACTCACAAGC
GTTCGCTTAATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGAC
GAAGGACCCCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCCA
GTGGAAAGATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTTAC
AAGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCGT
ATGAGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGGCG
ACTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGATG
CGGCACCTCTTCAATTTACGCCTCCTATCAGACTGTGTTTTGGGGGCTTT
TAGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCATCTACTCT
CTCGCTGTCTTTACGATAACATTCCAAATACTTCTTATCGTCCGGGCCAA
GCTGGGTCTGCCGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTGGC
CATTCTCTCCAAGCGCATGGGATGATCACGGGTTTTCACACTCACAAGCG
TTCGCTTAATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGACG
AAGGACCCCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCCAG
TGGAAAGATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTTTACA
AGAAGAGGTGGGACAGCTGCATCGGCGAGGAGGAGGTGGTGAGCTTCGTA
TGAGCTCTCTGTGGAAAGAAGAAGGACGGATGCGTGGCCATCATGGGCGA
CTGCATCGCTTCGTTCTTCTGCACACCCTGCGTCACCGCACGGATGATGC
GGCACCTCTTCAATTTACGCCTCCTATCAGACTGTGTTTTGGGGGCTTTT
AGTCCTCTTCGTCGTCACCTGTCTCTTCGGCGTGGCTTTCATCTACTCTC
TCGCTGTCTTTACGATAACATTCCAAATACTTCTTATCGTCCGGGCCAAG
CTGGGTCTGCCGGCTTGCTCGCCTTCTTTGTGCCGTGCTGCGCTTTGGCC
ATTCTCTCCAAGCGCATGGGATGATCACGGGTTTTCACACTCACAAGCGT
TCGCTTAATTTTTCCCTCCCTGTCTCCCTTCGGCCACTTATTTCAGACGA
AGGACCCCTCCCTGCCGCCACCGAAGGCTACCAGCCTCAGGAGGGCCAGT
GGAAAGATCATTGCTTTAATTGCTTCTCACAGATAAACCCTTCTT
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Synonyms
Publications