jgi.p|Nanoce1779_2|597917, mRNA_7241 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597917
Unique NamemRNA_7241
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length636
Alignment locationscaffold_19:800..2024 -

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Properties
Property NameValue
TranscriptId598003
TrackFilteredModels2
ProteinId597917
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_19supercontigscaffold_19:800..2024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597917gene_7241Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597917mRNA_7241-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7241CDS_7241Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7241 ID=mRNA_7241|Name=jgi.p|Nanoce1779_2|597917|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
CTCGCAACGTATCTCCATCATGTCGTCCTATGACTCTTCCGACTACGCCC
CGGGCCAAGGCGCCCCGATTGGCCAACGAATGGAGCAACACGAAGACATT
GGCGTGTCCATCGGAAGTGGATCCAACCCGGGCGGCGACTACGCCCCTCT
TGAAGGCCAATGGAAGGACGGACTTTGCGAATGTTGGAACCAGTGGTCCC
CGTCCTGCCTCCTCTCGTTCTTCGTCTCCTGTGTCGCCTTAGCCATGCTG
TCCAAACGGACGGGGGTCCTGCCTTATTGGTGTGTCCTAATCGGCATGAT
TGGCTGCGGTCTTATCGCCATTATCCTCTCGGGCTTTGCGGGCATCTTGA
TCTATGTCTACGGCTTCACGGCCTTCCTCATCACTTTCCTCATCCTCCGC
CGCGTCCGACAGCGATACTCGCTACCCTCCTACTTCGGTGGTCAGGGCGA
CAAGCACGACTGCAAGGCTGTCTTCGCGGACTGCCTCGCCTCCTGCTGCT
GCACGCCCTGTGTCATCTCACAGCTCCTTCGACATACATTTAATTACAAG
CGATCGTGCGACGGGTGTCAGTGTGCCGGAAGTAGGATCCAGACTCTGGT
CTAAGCAATGAAGCCCTCCTTCCCTCCCTCCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|597917

>mRNA_7241-protein ID=mRNA_7241-protein|Name=jgi.p|Nanoce1779_2|597917|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSSYDSSDYAPGQGAPIGQRMEQHEDIGVSIGSGSNPGGDYAPLEGQWKD
GLCECWNQWSPSCLLSFFVSCVALAMLSKRTGVLPYWCVLIGMIGCGLIA
IILSGFAGILIYVYGFTAFLITFLILRRVRQRYSLPSYFGGQGDKHDCKA
VFADCLASCCCTPCVISQLLRHTFNYKRSCDGCQCAGSRIQTLV*
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mRNA from alignment at scaffold_19:800..2024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7241 ID=mRNA_7241|Name=jgi.p|Nanoce1779_2|597917|organism=Nannochloropsis oceanica|type=mRNA|length=1225bp|location=Sequence derived from alignment at scaffold_19:800..2024- (Nannochloropsis oceanica)
CTCGCAACGTATCTCCATCATGTCGTCCTATGACTCTTCCGACTACGCCC
CGGGCCAAGGCGCCCCGATTGGCCAACGAATGGAGCAACACGAAGACATT
GGCGTGTCCATCGGAAGTGGTAAGACAAAAGGGAGGAATAATATGCCGCA
CAAGCAAGATGCATGTGGTAGTGATCGTAACGGTGTTGGTAGTGCTGCTG
CTGCTGCAGTTAATTCTGCCTGTTCTGCTTCGTCGTCCACACGTAAATTT
AAAACTAGAAAGGACCCATGCTCACTCCCGCCTTTCCCACCCGCTCTACC
CAGGATCCAACCCGGGCGGCGACTACGCCCCTCTTGAAGGCCAATGGAAG
GACGGACTTTGCGAATGTTGGAACCAGTGGTCCCCGTCCTGCCTCCTCTC
GTTCTTCGTCTCCTGTGTCGCCTTAGCCATGCTGTCCAAACGGACGGGGG
TCCTGCCTTATTGGTAAGAATAAAAAGGAGGGTAGGGATGACGAAAGGGT
TAAGGAAGGGAGGGAGGGATGTTAATGCACTGCTTTGATTCATGCTAGGA
CTCTCACCCTGGTGATTCTTCATTCATCACTCATCATATATGTATATATA
TATGTAAACATATTAAATGTTCCGCCTCCCATAGGTGTGTCCTAATCGGC
ATGATTGGCTGCGGTCTTATCGCCATTATCCTCTCGGGCTTTGCGGGCAT
CTTGATCTATGTCTACGGCTTCACGGCCTTCCTCATCACTTTCCTCATCC
TCCGCCGCGTCCGACAGCGATACTCGCTACCCTCCTACTTCGGTGGTCAG
GGCGACAAGCACGAGTACGTCCCTCCCTCCCTCCTTCTCTTTCACCCTGC
TCACCCCTTCGTCCTTCCCCCTCCATTGAGCTTCTTCATGTTGACTTTCA
TTTTTCTGATAATCTTGCCTTCTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCTCAAAGCT
GCAAGGCTGTCTTCGCGGACTGCCTCGCCTCCTGCTGCTGCACGCCCTGT
GTCATCTCACAGCTCCTTCGACATACATTTAATTACAAGCGATCGTGCGA
CGGGTGTCAGTGTGCCGGAAGTAGGATCCAGACTCTGGTCTAAGCAATGA
AGCCCTCCTTCCCTCCCTCCCTCCT
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Coding sequence (CDS) from alignment at scaffold_19:800..2024-

>mRNA_7241 ID=mRNA_7241|Name=jgi.p|Nanoce1779_2|597917|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_19:800..2024- (Nannochloropsis oceanica)
CTGCAAGGCTGTCTTCGCGGACTGCCTCGCCTCCTGCTGCTGCACGCCCT
GTGTCATCTCACAGCTCCTTCGACATACATTTAATTACAAGCGATCGTGC
GACGGGTGTCAGTGTGCCGGAAGTAGGATCCAGACTCTGGTCTAAGTGTG
TCCTAATCGGCATGATTGGCTGCGGTCTTATCGCCATTATCCTCTCGGGC
TTTGCGGGCATCTTGATCTATGTCTACGGCTTCACGGCCTTCCTCATCAC
TTTCCTCATCCTCCGCCGCGTCCGACAGCGATACTCGCTACCCTCCTACT
TCGGTGGTCAGGGCGACAAGCACGAGATCCAACCCGGGCGGCGACTACGC
CCCTCTTGAAGGCCAATGGAAGGACGGACTTTGCGAATGTTGGAACCAGT
GGTCCCCGTCCTGCCTCCTCTCGTTCTTCGTCTCCTGTGTCGCCTTAGCC
ATGCTGTCCAAACGGACGGGGGTCCTGCCTTATTGATGTCGTCCTATGAC
TCTTCCGACTACGCCCCGGGCCAAGGCGCCCCGATTGGCCAACGAATGGA
GCAACACGAAGACATTGGCGTGTCCATCGGAAGTGCTGCAAGGCTGTCTT
CGCGGACTGCCTCGCCTCCTGCTGCTGCACGCCCTGTGTCATCTCACAGC
TCCTTCGACATACATTTAATTACAAGCGATCGTGCGACGGGTGTCAGTGT
GCCGGAAGTAGGATCCAGACTCTGGTCTAAGTGTGTCCTAATCGGCATGA
TTGGCTGCGGTCTTATCGCCATTATCCTCTCGGGCTTTGCGGGCATCTTG
ATCTATGTCTACGGCTTCACGGCCTTCCTCATCACTTTCCTCATCCTCCG
CCGCGTCCGACAGCGATACTCGCTACCCTCCTACTTCGGTGGTCAGGGCG
ACAAGCACGAGATCCAACCCGGGCGGCGACTACGCCCCTCTTGAAGGCCA
ATGGAAGGACGGACTTTGCGAATGTTGGAACCAGTGGTCCCCGTCCTGCC
TCCTCTCGTTCTTCGTCTCCTGTGTCGCCTTAGCCATGCTGTCCAAACGG
ACGGGGGTCCTGCCTTATTGATGTCGTCCTATGACTCTTCCGACTACGCC
CCGGGCCAAGGCGCCCCGATTGGCCAACGAATGGAGCAACACGAAGACAT
TGGCGTGTCCATCGGAAGTGCTGCAAGGCTGTCTTCGCGGACTGCCTCGC
CTCCTGCTGCTGCACGCCCTGTGTCATCTCACAGCTCCTTCGACATACAT
TTAATTACAAGCGATCGTGCGACGGGTGTCAGTGTGCCGGAAGTAGGATC
CAGACTCTGGTCTAAGTGTGTCCTAATCGGCATGATTGGCTGCGGTCTTA
TCGCCATTATCCTCTCGGGCTTTGCGGGCATCTTGATCTATGTCTACGGC
TTCACGGCCTTCCTCATCACTTTCCTCATCCTCCGCCGCGTCCGACAGCG
ATACTCGCTACCCTCCTACTTCGGTGGTCAGGGCGACAAGCACGAGATCC
AACCCGGGCGGCGACTACGCCCCTCTTGAAGGCCAATGGAAGGACGGACT
TTGCGAATGTTGGAACCAGTGGTCCCCGTCCTGCCTCCTCTCGTTCTTCG
TCTCCTGTGTCGCCTTAGCCATGCTGTCCAAACGGACGGGGGTCCTGCCT
TATTGATGTCGTCCTATGACTCTTCCGACTACGCCCCGGGCCAAGGCGCC
CCGATTGGCCAACGAATGGAGCAACACGAAGACATTGGCGTGTCCATCGG
AAGTGCTGCAAGGCTGTCTTCGCGGACTGCCTCGCCTCCTGCTGCTGCAC
GCCCTGTGTCATCTCACAGCTCCTTCGACATACATTTAATTACAAGCGAT
CGTGCGACGGGTGTCAGTGTGCCGGAAGTAGGATCCAGACTCTGGTCTAA
GTGTGTCCTAATCGGCATGATTGGCTGCGGTCTTATCGCCATTATCCTCT
CGGGCTTTGCGGGCATCTTGATCTATGTCTACGGCTTCACGGCCTTCCTC
ATCACTTTCCTCATCCTCCGCCGCGTCCGACAGCGATACTCGCTACCCTC
CTACTTCGGTGGTCAGGGCGACAAGCACGAGATCCAACCCGGGCGGCGAC
TACGCCCCTCTTGAAGGCCAATGGAAGGACGGACTTTGCGAATGTTGGAA
CCAGTGGTCCCCGTCCTGCCTCCTCTCGTTCTTCGTCTCCTGTGTCGCCT
TAGCCATGCTGTCCAAACGGACGGGGGTCCTGCCTTATTGATGTCGTCCT
ATGACTCTTCCGACTACGCCCCGGGCCAAGGCGCCCCGATTGGCCAACGA
ATGGAGCAACACGAAGACATTGGCGTGTCCATCGGAAGTG
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Synonyms
Publications