jgi.p|Nanoce1779_2|557633, mRNA_7184 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557633
Unique Name	mRNA_7184
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2041
Alignment location	scaffold_16:482878..485106 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557719
Track	FilteredModels2
ProteinId	557633

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:482878..485106 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557633	gene_7184	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557633	mRNA_7184-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7184	CDS_7184	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:482878..485106+
coding sequence from alignment at scaffold_16:482878..485106+

mRNA sequence

>mRNA_7184 ID=mRNA_7184|Name=jgi.p|Nanoce1779_2|557633|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp
ATGACCCTACCACACCTCCCCCCCTCCCCCTCCTCCTTCCACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCATCCCGGCCCCCAGCCCTTCAT
CCTCCCTCGCCTCCCTTCATACCTCTCCTCCTACCCTCTTTCCCGTCCTG
CCCCAGTCCCTTGCTCTGGGTGTTTGTTGGGCTCCCAAACACAACATGAC
CAATCCCAGCGTCGAAATCCTTGAAGACGCCCTCCTGATCCGACGTCACT
TTCGGCAAGTCCGTACGTTCTATTCGTCCTACTACTCCTTGCCCGTCCTC
CCTCTCTTCGTTCGGGCAGGGATCAAGGTGGTGCTAGGGGTATTCATGTA
CCCAGAAGAACCCTCGTGGACCGAAGCGGAGAAGCAGACGGCGATACAGA
GTGCGATTGCCTACCCGGAAGAGACTCTCGCCATCTACGTGGGGAATGAG
AATGTGTATCCCTATAAAAACTTTACGGTCGACATGTTGGTCAAGCATAT
GAGGGATGTCAGGGAAGGGGTGAGGGAGGGTTTGTTGCTGAAGGCCAAGG
AGGGAGGATGGGAGGGAAGCAAGATCCCGCCTGTGGGGACGGTGCAGAGG
TTGACTGAATGGATGATAGAGGGGAAGGAGATGGATCGGCTTGCGGAAAG
TTCGGATCTAATTGGGGTAAATTTATATCCGTATTTCAGCGTTGATGGAG
AGGACCTGGAGACACAGTGGGCCAAAATGGTGAAGCGCTATCCGAAGCAC
GCGCACAAAATACGAATGACCGAAACGGGCTGGCCCAGCGCAGGGAACCC
TAATTTCGCGAATTTTACGGCTAGCCACGACCAAGCCCGAGACTTCTATA
GCACTTACTTGAAATGGGCTTGTAAGCAGTCAAAACCGGAGGGAGGGAAA
GAGGGATGGGTGAGCCCTGCAGCAACAGCCGTAAAAGAGACGTTTTATTA
CGCTTATTTTGATGGGAGGGCTCCGAGCGTCGCCCCTGATTACGAGGCTC
ACTTCGGGTTGGTGAGCGAAAGTGACAACACACCCAAATTTCCTTTGGCA
GAAGGTGGGCTGTGTCCGACTAAAATGAAGGAACAAGGAATGAAGGACGA
GACAGAGAGAGGGGTGGAAGGAGGGATAGAGGACGACATGAAAGAGTAGA
TGTGAGGGATTTGCGCTGTTATTGGGCGTTGTTATAATAAATAGGGACAA
GAGGGAGAAAGGCGCCGAGAAAGAAGAGGACAAGTGAGAAAGAGAAGGAG
GAGGATGAAAAGGTGGACAATTAGGAAATGGAGGGGAACGGGGAGGAGAA
GCAGCTGCGTTATGAGAAACAGGAAGAGGAGGAAAACAAGGAGGAAATCG
TAAAGATTCCAGCTTGATAGATTGCGCTTGTGTATGAGATTACTTGTTGA
AGCGTCAATTCGATTTCTTAATTTTGTATGAAGGGTAATTTAAAAAATGG
ATAGGTGAGGGGGGGGGTTAGGGGCTGCGTCGCTGCATCAATTGCTTGCG
CGTTTGCTTTGAAGTTATGGAACGATGTCTACAAACAGATGAAAAATGCG
AACAGATGAAAAATGCGAAGGCCTGCAGGAGAGTCAACGGTCAAGCACGA
GGTACATATGTGTAACTAGTGCAAGTGGCTTTGGTCTCATTTCTTGAAGG
GGCTCGCTCGGTCACCGACCTACTTTTGATTCACTCCACGTGACATAGAA
GCATGTATTAATCTTACTCGTCATTATGACTTCTGAAAATCCTTATGTCT
ATTCGTGCACATCCCTGCTTTAATTTTTACATTTCTTCTCATGTGTTTAC
CTCTGTTCTCATCTCAAATGTTTTCTTGTCACTCCTTCATTCCCTTCGCT
CCCTTCTCCATCCCCTTTCTCACCTACAGCACTATCTCCTCCCTTCATAA
CTCCTGCGAACCATCGCACTCCTATCTATTCAGCTCCTTCATCTCATTTC
ACTCAAATTCAACCTCAATTTCCTCTCGCTGTCCCTCCCAATCCTACCTC
TACTCCTCATTCCCCTCCTCCTCCTCCTCCTCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|557633

>mRNA_7184-protein ID=mRNA_7184-protein|Name=jgi.p|Nanoce1779_2|557633|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MTLPHLPPSPSSFHSSSSSSSSSSSSIPAPSPSSSLASLHTSPPTLFPVL
PQSLALGVCWAPKHNMTNPSVEILEDALLIRRHFRQVRTFYSSYYSLPVL
PLFVRAGIKVVLGVFMYPEEPSWTEAEKQTAIQSAIAYPEETLAIYVGNE
NVYPYKNFTVDMLVKHMRDVREGVREGLLLKAKEGGWEGSKIPPVGTVQR
LTEWMIEGKEMDRLAESSDLIGVNLYPYFSVDGEDLETQWAKMVKRYPKH
AHKIRMTETGWPSAGNPNFANFTASHDQARDFYSTYLKWACKQSKPEGGK
EGWVSPAATAVKETFYYAYFDGRAPSVAPDYEAHFGLVSESDNTPKFPLA
EGGLCPTKMKEQGMKDETERGVEGGIEDDMKE*

mRNA from alignment at scaffold_16:482878..485106+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7184 ID=mRNA_7184|Name=jgi.p|Nanoce1779_2|557633|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_16:482878..485106+ (Nannochloropsis oceanica)
ATGACCCTACCACACCTCCCCCCCTCCCCCTCCTCCTTCCACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCATCCCGGCCCCCAGCCCTTCAT
CCTCCCTCGCCTCCCTTCATACCTCTCCTCCTACCCTCTTTCCCGTCCTG
CCCCAGTCCCTTGCTCTGGGTGTTTGTTGGGCTCCCAAACACAACATGAC
CAATCCCAGCGTCGAAATCCTTGAAGACGCCCTCCTGATCCGACGTCACT
TTCGGCAAGTCCGTACGTTCTATTCGTCCTACTACTCCTTGCCCGTCCTC
CCTCTCTTCGTTCGGGCAGGGATCAAGGTGGTGCTAGGGGTATTCATGTA
CCCAGAAGAACCCTCGTGGACCGAAGCGGAGAAGCAGACGGCGATACAGA
GTGCGATTGCCTACCCGGAAGAGACTCTCGCCATCTACGTGGGGAATGAG
AATGTGTATCCCTATAAAAACTTTACGGTCGACATGTTGGTCAAGCATAT
GAGGGATGTCAGGGAAGGGGTGAGGGAGGGTTTGTTGCTGAAGGCCAAGG
AGGGAGGATGGGAGGGAAGCAAGATCCCGCCTGTGGGGACGGTGCAGAGG
TTGACTGAATGGATGATAGAGGGGAAGGAGATGGATCGGCTTGCGGAAAG
TTCGGATCTAATTGGGGTAAATTTATATCCGTATTTCAGCGTTGATGGAG
AGGACCTGGAGACACAGTGGGCCAAAATGGTGAAGCGCTATCCGAAGCAC
GCGCACAAAATACGAATGACCGAAACGGGCTGGCCCAGCGCAGGTACGAC
CCCTCTCCTACTCCTTCCCTCCCTACCTCCCTCCCTCCCTCCCCGCATTT
CGCGTCGACTTATAACTGAGCGGAATGCTACGTGCACACACTTCCCCCTC
TCTCCCTTCCCTCCCTCGATTCCTTCTGAAAGCTTCTAATGTTTCCCTCC
CTCTCCCTCCCTCCTCCCTCCCTCCCTCCAGGGAACCCTAATTTCGCGAA
TTTTACGGCTAGCCACGACCAAGCCCGAGACTTCTATAGCACTTACTTGA
AATGGGCTTGTAAGCAGTCAAAACCGGAGGGAGGGAAAGAGGGATGGGTG
AGCCCTGCAGCAACAGCCGTAAAAGAGACGTTTTATTACGCTTATTTTGA
TGGGAGGGCTCCGAGCGTCGCCCCTGATTACGAGGCTCACTTCGGGTTGG
TGAGCGAAAGTGACAACACACCCAAATTTCCTTTGGCAGAAGGTGGGCTG
TGTCCGACTAAAATGAAGGAACAAGGAATGAAGGACGAGACAGAGAGAGG
GGTGGAAGGAGGGATAGAGGACGACATGAAAGAGTAGATGTGAGGGATTT
GCGCTGTTATTGGGCGTTGTTATAATAAATAGGGACAAGAGGGAGAAAGG
CGCCGAGAAAGAAGAGGACAAGTGAGAAAGAGAAGGAGGAGGATGAAAAG
GTGGACAATTAGGAAATGGAGGGGAACGGGGAGGAGAAGCAGCTGCGTTA
TGAGAAACAGGAAGAGGAGGAAAACAAGGAGGAAATCGTAAAGATTCCAG
CTTGATAGATTGCGCTTGTGTATGAGATTACTTGTTGAAGCGTCAATTCG
ATTTCTTAATTTTGTATGAAGGGTAATTTAAAAAATGGATAGGTGAGGGG
GGGGGTTAGGGGCTGCGTCGCTGCATCAATTGCTTGCGCGTTTGCTTTGA
AGTTATGGAACGATGTCTACAAACAGATGAAAAATGCGAACAGATGAAAA
ATGCGAAGGCCTGCAGGAGAGTCAACGGTCAAGCACGAGGTACATATGTG
TAACTAGTGCAAGTGGCTTTGGTCTCATTTCTTGAAGGGGCTCGCTCGGT
CACCGACCTACTTTTGATTCACTCCACGTGACATAGAAGCATGTATTAAT
CTTACTCGTCATTATGACTTCTGAAAATCCTTATGTCTATTCGTGCACAT
CCCTGCTTTAATTTTTACATTTCTTCTCATGTGTTTACCTCTGTTCTCAT
CTCAAATGTTTTCTTGTCACTCCTTCATTCCCTTCGCTCCCTTCTCCATC
CCCTTTCTCACCTACAGCACTATCTCCTCCCTTCATAACTCCTGCGAACC
ATCGCACTCCTATCTATTCAGCTCCTTCATCTCATTTCACTCAAATTCAA
CCTCAATTTCCTCTCGCTGTCCCTCCCAATCCTACCTCTACTCCTCATTC
CCCTCCTCCTCCTCCTCCTCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_16:482878..485106+

>mRNA_7184 ID=mRNA_7184|Name=jgi.p|Nanoce1779_2|557633|organism=Nannochloropsis oceanica|type=CDS|length=2298bp|location=Sequence derived from alignment at scaffold_16:482878..485106+ (Nannochloropsis oceanica)
ATGACCCTACCACACCTCCCCCCCTCCCCCTCCTCCTTCCACTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCATCCCGGCCCCCAGCCCTTCAT
CCTCCCTCGCCTCCCTTCATACCTCTCCTCCTACCCTCTTTCCCGTCCTG
CCCCAGTCCCTTGCTCTGGGTGTTTGTTGGGCTCCCAAACACAACATGAC
CAATCCCAGCGTCGAAATCCTTGAAGACGCCCTCCTGATCCGACGTCACT
TTCGGCAAGTCCGTACGTTCTATTCGTCCTACTACTCCTTGCCCGTCCTC
CCTCTCTTCGTTCGGGCAGGGATCAAGGTGGTGCTAGGGGTATTCATGTA
CCCAGAAGAACCCTCGTGGACCGAAGCGGAGAAGCAGACGGCGATACAGA
GTGCGATTGCCTACCCGGAAGAGACTCTCGCCATCTACGTGGGGAATGAG
AATGTGTATCCCTATAAAAACTTTACGGTCGACATGTTGGTCAAGCATAT
GAGGGATGTCAGGGAAGGGGTGAGGGAGGGTTTGTTGCTGAAGGCCAAGG
AGGGAGGATGGGAGGGAAGCAAGATCCCGCCTGTGGGGACGGTGCAGAGG
TTGACTGAATGGATGATAGAGGGGAAGGAGATGGATCGGCTTGCGGAAAG
TTCGGATCTAATTGGGGTAAATTTATATCCGTATTTCAGCGTTGATGGAG
AGGACCTGGAGACACAGTGGGCCAAAATGGTGAAGCGCTATCCGAAGCAC
GCGCACAAAATACGAATGACCGAAACGGGCTGGCCCAGCGCAGGGAACCC
TAATTTCGCGAATTTTACGGCTAGCCACGACCAAGCCCGAGACTTCTATA
GCACTTACTTGAAATGGGCTTGTAAGCAGTCAAAACCGGAGGGAGGGAAA
GAGGGATGGGTGAGCCCTGCAGCAACAGCCGTAAAAGAGACGTTTTATTA
CGCTTATTTTGATGGGAGGGCTCCGAGCGTCGCCCCTGATTACGAGGCTC
ACTTCGGGTTGGTGAGCGAAAGTGACAACACACCCAAATTTCCTTTGGCA
GAAGGTGGGCTGTGTCCGACTAAAATGAAGGAACAAGGAATGAAGGACGA
GACAGAGAGAGGGGTGGAAGGAGGGATAGAGGACGACATGAAAGAGTAGA
TGACCCTACCACACCTCCCCCCCTCCCCCTCCTCCTTCCACTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCATCCCGGCCCCCAGCCCTTCATC
CTCCCTCGCCTCCCTTCATACCTCTCCTCCTACCCTCTTTCCCGTCCTGC
CCCAGTCCCTTGCTCTGGGTGTTTGTTGGGCTCCCAAACACAACATGACC
AATCCCAGCGTCGAAATCCTTGAAGACGCCCTCCTGATCCGACGTCACTT
TCGGCAAGTCCGTACGTTCTATTCGTCCTACTACTCCTTGCCCGTCCTCC
CTCTCTTCGTTCGGGCAGGGATCAAGGTGGTGCTAGGGGTATTCATGTAC
CCAGAAGAACCCTCGTGGACCGAAGCGGAGAAGCAGACGGCGATACAGAG
TGCGATTGCCTACCCGGAAGAGACTCTCGCCATCTACGTGGGGAATGAGA
ATGTGTATCCCTATAAAAACTTTACGGTCGACATGTTGGTCAAGCATATG
AGGGATGTCAGGGAAGGGGTGAGGGAGGGTTTGTTGCTGAAGGCCAAGGA
GGGAGGATGGGAGGGAAGCAAGATCCCGCCTGTGGGGACGGTGCAGAGGT
TGACTGAATGGATGATAGAGGGGAAGGAGATGGATCGGCTTGCGGAAAGT
TCGGATCTAATTGGGGTAAATTTATATCCGTATTTCAGCGTTGATGGAGA
GGACCTGGAGACACAGTGGGCCAAAATGGTGAAGCGCTATCCGAAGCACG
CGCACAAAATACGAATGACCGAAACGGGCTGGCCCAGCGCAGGGAACCCT
AATTTCGCGAATTTTACGGCTAGCCACGACCAAGCCCGAGACTTCTATAG
CACTTACTTGAAATGGGCTTGTAAGCAGTCAAAACCGGAGGGAGGGAAAG
AGGGATGGGTGAGCCCTGCAGCAACAGCCGTAAAAGAGACGTTTTATTAC
GCTTATTTTGATGGGAGGGCTCCGAGCGTCGCCCCTGATTACGAGGCTCA
CTTCGGGTTGGTGAGCGAAAGTGACAACACACCCAAATTTCCTTTGGCAG
AAGGTGGGCTGTGTCCGACTAAAATGAAGGAACAAGGAATGAAGGACGAG
ACAGAGAGAGGGGTGGAAGGAGGGATAGAGGACGACATGAAAGAGTAG

Synonyms

Publications