jgi.p|Nanoce1779_2|595519, mRNA_7074 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595519
Unique Name	mRNA_7074
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1404
Alignment location	scaffold_16:230541..232730 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595605
Track	FilteredModels2
ProteinId	595519

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:230541..232730 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595519	gene_7074	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595519	mRNA_7074-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7074	CDS_7074	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:230541..232730-
coding sequence from alignment at scaffold_16:230541..232730-

mRNA sequence

>mRNA_7074 ID=mRNA_7074|Name=jgi.p|Nanoce1779_2|595519|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
CAGTGAACAAGTCAGCCACTTTGCCCTGTAGCATCACGTCGAAGCCAAAG
CCACGCATATCTTTCCCGATCTGACTCAAGAACAGACACGCACCAGCGGC
CTCGCATTCCTCCATCTCTGCTGCACGCCCAAGCCTCTATTTTTCTAACA
CCATGGTTCTCAATACCCCGGCCGGGCTGTTGCTTGCTGCTTACGCCCTG
GTGATCACATGGGTCGCGTGGTACTTCTTCCGCATGCTATGGGGTCATCA
TTCGCAGGAGGAAAGTATGGTGAAGCACTACGGAGAAGACCGTCGTCGAG
TGCCTTATGCTGCCCCTTGTCCCATCCCCTCGCATATCTCTCTTACTGAG
AAATTCGTTATGAACGCGCGTGGGATGTTGCTTTATACCTGTGCATGGCA
TCCCTCTCACATAGAGAGACCCAAGGCCTTGATTTTCCAGTGTTGTGGTT
TTGCCGATACTAACACCTTCCTGCCCATGATGCGATCCATCCGGCTGGCC
GAGCGCGGCTTTGTGGTGGTAGGAATGGATCCGGAGGGCCACGGACGAAG
CGATGGATTGCATGCCTACGTCCCTTCGTTCCCTACCTTGGTGGAAGATT
ACTGGCAATTTTTCATTAAGGAGATTATGACGAATCCCGCCTATGCTGGT
CTACCCGTTTTCCTTCTAGGGGAAAGCATGGGGGGAAATGTCGCTATCCA
ACTCTTGCTCCGCGATCGGACAGAGAAGAAAAAGAACCCCAAAAAACACA
AGTCTTTCTTTGCTGGGGCTGTCTTCCTCGCCCCGATGGTAAAAATCTCT
CCTGCGTTAAAGCCCCCTGAATGCCTCGTCAATCTGCTTCGGCAAGTGGC
ACCTTTCATCCCCACCTTGCCGGTGGCGCCGACGAAGGACGTCTTGGCCC
AGGCGTTTCGACGACCGGATATACTGGAAATGGCGCGAAATTCCCCGTAT
GGATACAGAATGAAGCCGCGGCTAGGGACGGCATTGCAGCTCCTGGAGGC
CACGGAGGAAGTGGCTGGGCGCATGGAGGAGGTGGAGCATCCTTTCCTCC
TCTTACAAGGTGACGCCGACGTTGTCACATGCCCGGAAGTGATCAAGGAA
TTTCATGCCAAAGCCGGCAGCAAGGACAAGGAACTTAAGCTGTACGAAGG
AATGTGGCACTCCCTCGTGGGAGGGGAGCTAGAGCCGCACATAGAGAGGG
TGTACGGTGATATGTTCGCTTGGTTGGAGAGGCAATTATTGAAGCAGGGG
AAGGAAGAAGAGGAGGACAAAGAGGAGGAAGAGAAAGCGGAAGTGCGGGA
AGTGGAGGGAATGGCGCGTCGGCGGAGCACGCGACGGTCGGTCAAGGTTT
CGGGTTAGAGGAAAGGGAGGGAGGGAGAGAGCCTCCCTCCCTCCCCTCAA
GCCT

protein sequence of jgi.p|Nanoce1779_2|595519

>mRNA_7074-protein ID=mRNA_7074-protein|Name=jgi.p|Nanoce1779_2|595519|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MVLNTPAGLLLAAYALVITWVAWYFFRMLWGHHSQEESMVKHYGEDRRRV
PYAAPCPIPSHISLTEKFVMNARGMLLYTCAWHPSHIERPKALIFQCCGF
ADTNTFLPMMRSIRLAERGFVVVGMDPEGHGRSDGLHAYVPSFPTLVEDY
WQFFIKEIMTNPAYAGLPVFLLGESMGGNVAIQLLLRDRTEKKKNPKKHK
SFFAGAVFLAPMVKISPALKPPECLVNLLRQVAPFIPTLPVAPTKDVLAQ
AFRRPDILEMARNSPYGYRMKPRLGTALQLLEATEEVAGRMEEVEHPFLL
LQGDADVVTCPEVIKEFHAKAGSKDKELKLYEGMWHSLVGGELEPHIERV
YGDMFAWLERQLLKQGKEEEEDKEEEEKAEVREVEGMARRRSTRRSVKVS
G*

mRNA from alignment at scaffold_16:230541..232730-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7074 ID=mRNA_7074|Name=jgi.p|Nanoce1779_2|595519|organism=Nannochloropsis oceanica|type=mRNA|length=2190bp|location=Sequence derived from alignment at scaffold_16:230541..232730- (Nannochloropsis oceanica)
CAGTGAACAAGTCAGCCACTTTGCCCTGTAGCATCACGTCGAAGCCAAAG
CCACGCATATCTTTCCCGATCTGACTCAAGAACAGACACGCACCAGCGGC
CTCGCATTCCTCCATCTCTGCTGCACGCCCAAGCCTCTATTTTTCTAACA
CCATGGTTCTCAATACCCCGGCCGGGCTGTTGCTTGCTGCTTACGCCCTG
GTGATCACATGGGTCGCGTGGTACTTCTTCCGCATGCTATGGGGTCATCA
TTCGCAGGAGGAAAGTATGGTGAAGCACTACGGAGAAGACCGTCGTCGAG
TGCCTTATGCTGCCCCTTGTCCCATCCCCTCGCATATCTCTCTTACTGAG
AAATTCGTTATGAACGCGCGTGGGATGTTGCTTTATACCTGTGCATGGCA
TCCCTCTCACATAGAGAGACCCAAGGCCTTGATTTTCCAGTGTTGTGGTT
TTGCCGATACTAACACCTTCCTGCCCATGATGCGATCCATCCGGCTGGCC
GAGCGCGGCTTTGTGGTGGTAGGAATGGATCCGGAGGGCCACGGACGAAG
CGATGGATTGCATGCCTACGTCCCTTCGTTCCCTACCTTGGTGGAAGATT
ACTGGCAATTTTTCATTAAGGAGATTATGACGAATCCCGCCTATGCTGGT
CTACCCGTTTTCCTTCTAGGGGAAAGCATGGGGGGAAATGTCGCTATCCA
ACTCTTGCTCCGCGATCGGACAGAGAAGAAAAAGAACCCCAAAAAACACA
AGTCTTTCTTTGCTGGGGCTGTCTTCCTCGCCCCGATGGTAAAAATCTCT
CCTGCGTTAAAGCCCCCTGAATGCCTCGTCAATCTGCTTCGGCAAGTGGC
ACCTTTCATCCCCACCTTGCCGGTGGCGCCGACGAAGGACGTCTTGGCCC
AGGCGTTTCGACGACCGGATATACTGGAAATGGCGCGAAATTCCCCGTAT
GGATACAGAATGAAGCCGCGGCTAGGGACGGCATTGCAGGTACGGCCAAG
AAAGGAAGAAGAAAAAGAGGGAGGGAGGGAGGGAGTGAGGGAGGGGAGAT
GCGGGTATCACGATTCGGTATGCCAGCGCTTTGCTTTTATCGATTCGGCT
CCACCCATGTAATCGCTTGCCCCCCTTCCCTCCCTCCTTCCCATCCTCCC
TGACTCAGCTCCTGGAGGCCACGGAGGAAGTGGCTGGGCGCATGGAGGAG
GTGGAGCATCCTTTCCTCCTCTTACAAGGTGACGCCGACGTTGTCACATG
CCCGGAAGTGATCAAGGTAATGAATACTTAGGACTTAACATAGTGAAGCG
TTTATAAGCGTAGGGAGGGAAGGAGGGGATGAGAGGGAGAGGAAGCTGGG
AACGGACGTCCCGTCCCTTGGGAGCATGGGAATTTCGTAGGCTGTGTCTG
AATTCCATCCCTCCCTCCCTCCCTCACTCACTCACTCACTCCTTCACTCT
CCTCACTGTCAACAGGAATTTCATGCCAAAGCCGGCAGCAAGGACAAGGA
ACTTAAGCTGTACGAAGGAATGTGGCACTCCCTCGTGGGAGGGGAGCTAG
AGCCGCACATAGAGAGGGTGTACGGTGATATGTTCGCTTGGTTGGAGAGG
CAATTATTGAAGCAGGGGAAGGAAGAAGAGGAGGACAAAGAGGAGGAAGA
GAAAGCGGAAGTGCGGGAAGTGGAGGGAATGGCGCGTCGGCGGAGCACGC
GACGGTCGGTCAAGGTTTCGGGTTAGAGGAAAGGGAGGGAGGGAGAGAGA
GGGAGGGAGGGAGGGAGAGAGAACGAGGCAGTCGGTCTATAGCCGAGGGA
GCAAAATTTAAAAAACAAAGGACGTGTACAAAACCTGACACAGGTAATTA
AAGTCGAAATGCCCTATTATTAATGCCGTCAAATGGATCTGAAGATGCTG
CTTCTTTCTTTCATGTATTTAATCTTTGTGCATGCATTTCCACTTCTTTA
TTCGCCCCCCTCCGTCTACTTCCTCCACACAGCGGTAATGTGAACACGTG
GCTTGCCCGCGTCCTCCATCCCTTTCCCCCTCCCTTTCTCGCTTTCTTCC
TTTGTCGTCTCCCCTCCCTTCCTCTCTACTCTCTTCTTCTCACACCATGA
GGCGCATACATTTAATCTATGTCCAGTGTACGCCAGGGGACACCCTCCTC
CCCTCCCTCCCTCCATCCCTCCCTCCCTCCCCTCAAGCCT

Coding sequence (CDS) from alignment at scaffold_16:230541..232730-

>mRNA_7074 ID=mRNA_7074|Name=jgi.p|Nanoce1779_2|595519|organism=Nannochloropsis oceanica|type=CDS|length=3618bp|location=Sequence derived from alignment at scaffold_16:230541..232730- (Nannochloropsis oceanica)
GAATTTCATGCCAAAGCCGGCAGCAAGGACAAGGAACTTAAGCTGTACGA
AGGAATGTGGCACTCCCTCGTGGGAGGGGAGCTAGAGCCGCACATAGAGA
GGGTGTACGGTGATATGTTCGCTTGGTTGGAGAGGCAATTATTGAAGCAG
GGGAAGGAAGAAGAGGAGGACAAAGAGGAGGAAGAGAAAGCGGAAGTGCG
GGAAGTGGAGGGAATGGCGCGTCGGCGGAGCACGCGACGGTCGGTCAAGG
TTTCGGGTTAGCTCCTGGAGGCCACGGAGGAAGTGGCTGGGCGCATGGAG
GAGGTGGAGCATCCTTTCCTCCTCTTACAAGGTGACGCCGACGTTGTCAC
ATGCCCGGAAGTGATCAAGATGGTTCTCAATACCCCGGCCGGGCTGTTGC
TTGCTGCTTACGCCCTGGTGATCACATGGGTCGCGTGGTACTTCTTCCGC
ATGCTATGGGGTCATCATTCGCAGGAGGAAAGTATGGTGAAGCACTACGG
AGAAGACCGTCGTCGAGTGCCTTATGCTGCCCCTTGTCCCATCCCCTCGC
ATATCTCTCTTACTGAGAAATTCGTTATGAACGCGCGTGGGATGTTGCTT
TATACCTGTGCATGGCATCCCTCTCACATAGAGAGACCCAAGGCCTTGAT
TTTCCAGTGTTGTGGTTTTGCCGATACTAACACCTTCCTGCCCATGATGC
GATCCATCCGGCTGGCCGAGCGCGGCTTTGTGGTGGTAGGAATGGATCCG
GAGGGCCACGGACGAAGCGATGGATTGCATGCCTACGTCCCTTCGTTCCC
TACCTTGGTGGAAGATTACTGGCAATTTTTCATTAAGGAGATTATGACGA
ATCCCGCCTATGCTGGTCTACCCGTTTTCCTTCTAGGGGAAAGCATGGGG
GGAAATGTCGCTATCCAACTCTTGCTCCGCGATCGGACAGAGAAGAAAAA
GAACCCCAAAAAACACAAGTCTTTCTTTGCTGGGGCTGTCTTCCTCGCCC
CGATGGTAAAAATCTCTCCTGCGTTAAAGCCCCCTGAATGCCTCGTCAAT
CTGCTTCGGCAAGTGGCACCTTTCATCCCCACCTTGCCGGTGGCGCCGAC
GAAGGACGTCTTGGCCCAGGCGTTTCGACGACCGGATATACTGGAAATGG
CGCGAAATTCCCCGTATGGATACAGAATGAAGCCGCGGCTAGGGACGGCA
TTGCAGGAATTTCATGCCAAAGCCGGCAGCAAGGACAAGGAACTTAAGCT
GTACGAAGGAATGTGGCACTCCCTCGTGGGAGGGGAGCTAGAGCCGCACA
TAGAGAGGGTGTACGGTGATATGTTCGCTTGGTTGGAGAGGCAATTATTG
AAGCAGGGGAAGGAAGAAGAGGAGGACAAAGAGGAGGAAGAGAAAGCGGA
AGTGCGGGAAGTGGAGGGAATGGCGCGTCGGCGGAGCACGCGACGGTCGG
TCAAGGTTTCGGGTTAGCTCCTGGAGGCCACGGAGGAAGTGGCTGGGCGC
ATGGAGGAGGTGGAGCATCCTTTCCTCCTCTTACAAGGTGACGCCGACGT
TGTCACATGCCCGGAAGTGATCAAGATGGTTCTCAATACCCCGGCCGGGC
TGTTGCTTGCTGCTTACGCCCTGGTGATCACATGGGTCGCGTGGTACTTC
TTCCGCATGCTATGGGGTCATCATTCGCAGGAGGAAAGTATGGTGAAGCA
CTACGGAGAAGACCGTCGTCGAGTGCCTTATGCTGCCCCTTGTCCCATCC
CCTCGCATATCTCTCTTACTGAGAAATTCGTTATGAACGCGCGTGGGATG
TTGCTTTATACCTGTGCATGGCATCCCTCTCACATAGAGAGACCCAAGGC
CTTGATTTTCCAGTGTTGTGGTTTTGCCGATACTAACACCTTCCTGCCCA
TGATGCGATCCATCCGGCTGGCCGAGCGCGGCTTTGTGGTGGTAGGAATG
GATCCGGAGGGCCACGGACGAAGCGATGGATTGCATGCCTACGTCCCTTC
GTTCCCTACCTTGGTGGAAGATTACTGGCAATTTTTCATTAAGGAGATTA
TGACGAATCCCGCCTATGCTGGTCTACCCGTTTTCCTTCTAGGGGAAAGC
ATGGGGGGAAATGTCGCTATCCAACTCTTGCTCCGCGATCGGACAGAGAA
GAAAAAGAACCCCAAAAAACACAAGTCTTTCTTTGCTGGGGCTGTCTTCC
TCGCCCCGATGGTAAAAATCTCTCCTGCGTTAAAGCCCCCTGAATGCCTC
GTCAATCTGCTTCGGCAAGTGGCACCTTTCATCCCCACCTTGCCGGTGGC
GCCGACGAAGGACGTCTTGGCCCAGGCGTTTCGACGACCGGATATACTGG
AAATGGCGCGAAATTCCCCGTATGGATACAGAATGAAGCCGCGGCTAGGG
ACGGCATTGCAGGAATTTCATGCCAAAGCCGGCAGCAAGGACAAGGAACT
TAAGCTGTACGAAGGAATGTGGCACTCCCTCGTGGGAGGGGAGCTAGAGC
CGCACATAGAGAGGGTGTACGGTGATATGTTCGCTTGGTTGGAGAGGCAA
TTATTGAAGCAGGGGAAGGAAGAAGAGGAGGACAAAGAGGAGGAAGAGAA
AGCGGAAGTGCGGGAAGTGGAGGGAATGGCGCGTCGGCGGAGCACGCGAC
GGTCGGTCAAGGTTTCGGGTTAGCTCCTGGAGGCCACGGAGGAAGTGGCT
GGGCGCATGGAGGAGGTGGAGCATCCTTTCCTCCTCTTACAAGGTGACGC
CGACGTTGTCACATGCCCGGAAGTGATCAAGATGGTTCTCAATACCCCGG
CCGGGCTGTTGCTTGCTGCTTACGCCCTGGTGATCACATGGGTCGCGTGG
TACTTCTTCCGCATGCTATGGGGTCATCATTCGCAGGAGGAAAGTATGGT
GAAGCACTACGGAGAAGACCGTCGTCGAGTGCCTTATGCTGCCCCTTGTC
CCATCCCCTCGCATATCTCTCTTACTGAGAAATTCGTTATGAACGCGCGT
GGGATGTTGCTTTATACCTGTGCATGGCATCCCTCTCACATAGAGAGACC
CAAGGCCTTGATTTTCCAGTGTTGTGGTTTTGCCGATACTAACACCTTCC
TGCCCATGATGCGATCCATCCGGCTGGCCGAGCGCGGCTTTGTGGTGGTA
GGAATGGATCCGGAGGGCCACGGACGAAGCGATGGATTGCATGCCTACGT
CCCTTCGTTCCCTACCTTGGTGGAAGATTACTGGCAATTTTTCATTAAGG
AGATTATGACGAATCCCGCCTATGCTGGTCTACCCGTTTTCCTTCTAGGG
GAAAGCATGGGGGGAAATGTCGCTATCCAACTCTTGCTCCGCGATCGGAC
AGAGAAGAAAAAGAACCCCAAAAAACACAAGTCTTTCTTTGCTGGGGCTG
TCTTCCTCGCCCCGATGGTAAAAATCTCTCCTGCGTTAAAGCCCCCTGAA
TGCCTCGTCAATCTGCTTCGGCAAGTGGCACCTTTCATCCCCACCTTGCC
GGTGGCGCCGACGAAGGACGTCTTGGCCCAGGCGTTTCGACGACCGGATA
TACTGGAAATGGCGCGAAATTCCCCGTATGGATACAGAATGAAGCCGCGG
CTAGGGACGGCATTGCAG

Synonyms

Publications