jgi.p|Nanoce1779_2|595516, mRNA_7073 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595516
Unique Name	mRNA_7073
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2062
Alignment location	scaffold_16:228303..230552 +

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Properties


Property Name	Value
TranscriptId	595602
Track	FilteredModels2
ProteinId	595516

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:228303..230552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595516	gene_7073	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595516	mRNA_7073-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7073	CDS_7073	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:228303..230552+
coding sequence from alignment at scaffold_16:228303..230552+

mRNA sequence

>mRNA_7073 ID=mRNA_7073|Name=jgi.p|Nanoce1779_2|595516|organism=Nannochloropsis oceanica|type=mRNA|length=2062bp
ACAGAACACAAGTAAGCAGCTCCGACAGGGCATGCACTACCTCGATAATC
AGTTCTATGGTGGCCTTAAAGTGGCGGCGACTGTGCTCATGTGTCTTGGG
CTGGCCGTTCTGGTACGTCATGAAGGTATCACGGTGGTGGGACGTAGGAG
GTACGGTACCACAAAAACGTAGGCGAGACGAGGCCGTCCACGTATGCATG
AGCACACATTCGCTCGCCAATCCCAAGGACTAGGCGAGATTCAGCCTACT
ACCGCTGGCTTCGTGGCCCTACCCTCCTCCCAGTCATTGGCCTTGCTGCC
GTCGCCTTGCGCATGAAAACCCTCTTCTTCTCCACTTCCTCCTCCACAAA
CGCCAGCGCAACTCCCCTCCCTCCGTCCCTTCTCACTCACATCCTTGTCA
TGATTTCTGACATCCTTTCCTCGCCAGCCCATGCCCCATTCCTTATCCTC
TTGCAAGACATTCTTGCTCTCTTCCTTCTGCTCGGCGGCATCCACGGCGT
GCGCGGCGCCCGTCGACTGCAATGGGCTGCCGTTAAAGCCAACGTAGGAG
ACAGCTTCTTCGACCTCATCAAAGATTTTGGACCGGTCCGAAGAAAACTG
GAGGAGGAAACCCGCAAGTTAGAAACGACCATGGAACACTCCTTGAGGCC
CCCGGGATGGAATGGCGAGGCAGGGCAGCAGGGCGGGAGGAAGGAGGGGG
CCAAGCCTGCCTTGCCCCCAAAAGGGGTACCAGCCGAGGAGCTTCTCCGG
CAGATGAAATCGTTTGTGGGAAAGGAGGAAGGGAAATGGAAGGACGGGTG
GGTTTCGGGTGCTGTCTATGGAGGGGAGGAAGAAGTGGTGGCCCTGATGG
GGGAGGCGAGCGCCCTGTACGCGTTGACAAACCCTCTGCACCCAGACCTG
TGGCCGAGCGTGATGAAATTTGAGAGTGAGGTGTGTGGAATGGTGTGCAA
GATGGTTAACGGCGGGGATGAGGGCGTGGTGGGGTGTTTGACCTCGGGAG
GAACCGAATCAATAATGCTTGCGGCTAAGGCGCATAGGGACTGGGCTCGT
GCAGAGAAGGGGGTAGGAGGGCATGAGGGCGAGATAGTCGCGTGTGTTTC
TGCGCATGCAGCCATTCATAAAGCCGCGGATGTGATGGGGTTGCGACTGG
TGCTTGTGCCCATGGACCCGACCACGTTTAAAGTCGACGTGAAGGCAATG
GAGGCCGCCATCACCTCGAGCACGGTGTTGCTGTACGCCAGCGCGCCCAC
GTTTGCTCAAGGCGTAATTGATGGCGTGAGTGATGTTTCTCGACTCGGTC
TAAAATACTCGGTGGGTGTGCATGTTGACTGCTGCTTGGGCGGGTTCTTG
CTTCCCTTTGCCCGCAAAGCAGGGGTGATGGACATTCCTCCTTTTGACTT
TTCGCTCCCCGGGGTCACTTCCATGAGCGTGGATACGCACAAATACGGCT
ATGCTGCCAAAGGCACCTCCGTAGTGTGTTACCGTAACCAAACCCTCCGT
CACCACCAATACTTCTGCTTTCCCTCGTGGACGGGTGGTCTGTATGTGAC
CCCGACACTGGCAGGCTCGCGTCCGGGAGCGCTTAGTGCCGCCTGTTGGG
CCGCCTTGATGTGGATTGGGGAGGAAGGGTACGTGACGCGCGCACGTGAC
GTCCTCCTGACAGCCAGACGGATCGCCCAGGGCGTGCGTAACGGCATTCC
AGGCGTTGAATTGCAAGGGTCGGGGGAAGCGATGATAGTGTGTGTGGGAG
GAAGGGAGGGCGTGGACATCTATGAGGTGGGCGACCGCATGGCCCAAAGA
GGGTGGAACCTCAATGCTCTCCAGGCTCCCGCAGGCCTACATTTATGCTG
TACCTTACGACATGTCGGGAAGGAGGAAAGATTCCTGAAGCACTTGACGG
AGTCCGCGGCGGAGGTGATGGCGGAGGGAGGCAAGGAGGGAGGGAGGAAG
GGAGGAAAGGAGGGGAATTCGGCGATTTATGGGATGGCGGCCACATTACC
TGCGGGGCCAATCAATGAAATGCTGAAAGTGTACACAGACTGTGTGCTCA
AGGCTTGAGGGG

protein sequence of jgi.p|Nanoce1779_2|595516

>mRNA_7073-protein ID=mRNA_7073-protein|Name=jgi.p|Nanoce1779_2|595516|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MKTLFFSTSSSTNASATPLPPSLLTHILVMISDILSSPAHAPFLILLQDI
LALFLLLGGIHGVRGARRLQWAAVKANVGDSFFDLIKDFGPVRRKLEEET
RKLETTMEHSLRPPGWNGEAGQQGGRKEGAKPALPPKGVPAEELLRQMKS
FVGKEEGKWKDGWVSGAVYGGEEEVVALMGEASALYALTNPLHPDLWPSV
MKFESEVCGMVCKMVNGGDEGVVGCLTSGGTESIMLAAKAHRDWARAEKG
VGGHEGEIVACVSAHAAIHKAADVMGLRLVLVPMDPTTFKVDVKAMEAAI
TSSTVLLYASAPTFAQGVIDGVSDVSRLGLKYSVGVHVDCCLGGFLLPFA
RKAGVMDIPPFDFSLPGVTSMSVDTHKYGYAAKGTSVVCYRNQTLRHHQY
FCFPSWTGGLYVTPTLAGSRPGALSAACWAALMWIGEEGYVTRARDVLLT
ARRIAQGVRNGIPGVELQGSGEAMIVCVGGREGVDIYEVGDRMAQRGWNL
NALQAPAGLHLCCTLRHVGKEERFLKHLTESAAEVMAEGGKEGGRKGGKE
GNSAIYGMAATLPAGPINEMLKVYTDCVLKA*

mRNA from alignment at scaffold_16:228303..230552+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7073 ID=mRNA_7073|Name=jgi.p|Nanoce1779_2|595516|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at scaffold_16:228303..230552+ (Nannochloropsis oceanica)
ACAGAACACAAGTAAGCAGCTCCGACAGGGCATGCACTACCTCGATAATC
AGTTCTATGGTGGCCTTAAAGTGGCGGCGACTGTGCTCATGTGTCTTGGG
CTGGCCGTTCTGGTACGTCATGAAGGTATCACGGTGGTGGGACGTAGGAG
GTACGGTACCACAAAAACGTAGGCGAGACGAGGCCGTCCACGTATGCATG
AGCACACATTCGCTCGCCAATCCCAAGGACTAGGGTGAGTAGAAGTCGAC
AAGCTGCGGTTTGCTGCAGAAGGCCCGCTTTCTGTCCACCTCTCTACCTT
GCCTGATGAGTCTCTTCCCTCCGCCTCCCCCGACTGACCCCGATACCATC
CCTCCTCATTTTCTCCCTCAAACTCATACGTCTTTCACCTTCCTTCCCAA
CCTTTCACCATCATGGCTTTAGCGAGATTCAGCCTACTACCGCTGGCTTC
GTGGCCCTACCCTCCTCCCAGTCATTGGCCTTGCTGCCGTCGCCTTGCGC
ATGAAAACCCTCTTCTTCTCCACTTCCTCCTCCACAAACGCCAGCGCAAC
TCCCCTCCCTCCGTCCCTTCTCACTCACATCCTTGTCATGATTTCTGACA
TCCTTTCCTCGCCAGCCCATGCCCCATTCCTTATCCTCTTGCAAGACATT
CTTGCTCTCTTCCTTCTGCTCGGCGGCATCCACGGCGTGCGCGGCGCCCG
TCGACTGCAATGGGCTGCCGTTAAAGCCAACGTAGGAGACAGCTTCTTCG
ACCTCATCAAAGATTTTGGACCGGTCCGAAGAAAACTGGAGGAGGAAACC
CGCAAGTTAGAAACGACCATGGAACACTCCTTGAGGCCCCCGGGATGGAA
TGGCGAGGCAGGGCAGCAGGGCGGGAGGAAGGAGGGGGCCAAGCCTGCCT
TGCCCCCAAAAGGGGTACCAGCCGAGGAGCTTCTCCGGCAGATGAAATCG
TTTGTGGGAAAGGAGGAAGGGAAATGGAAGGACGGGTGGGTTTCGGGTGC
TGTCTATGGAGGGGAGGAAGAAGTGGTGGCCCTGATGGGGGAGGCGAGCG
CCCTGTACGCGTTGACAAACCCTCTGCACCCAGACCTGTGGCCGAGCGTG
ATGAAATTTGAGAGTGAGGTGTGTGGAATGGTGTGCAAGATGGTTAACGG
CGGGGATGAGGGCGTGGTGGGGTGTTTGACCTCGGGAGGAACCGAATCAA
TAATGCTTGCGGCTAAGGCGCATAGGGACTGGGCTCGTGCAGAGAAGGGG
GTAGGAGGGCATGAGGGCGAGATAGTCGCGTGTGTTTCTGCGCATGCAGC
CATTCATAAAGCCGCGGATGTGATGGGGTTGCGACTGGTGCTTGTGCCCA
TGGACCCGACCACGTTTAAAGTCGACGTGAAGGCAATGGAGGCCGCCATC
ACCTCGAGCACGGTGTTGCTGTACGCCAGCGCGCCCACGTTTGCTCAAGG
CGTAATTGATGGCGTGAGTGATGTTTCTCGACTCGGTCTAAAATACTCGG
TGGGTGTGCATGTTGACTGCTGCTTGGGCGGGTTCTTGCTTCCCTTTGCC
CGCAAAGCAGGGGTGATGGACATTCCTCCTTTTGACTTTTCGCTCCCCGG
GGTCACTTCCATGAGCGTGGATACGCACAAATACGGCTATGCTGCCAAAG
GCACCTCCGTAGTGTGTTACCGTAACCAAACCCTCCGTCACCACCAATAC
TTCTGCTTTCCCTCGTGGACGGGTGGTCTGTATGTGACCCCGACACTGGC
AGGCTCGCGTCCGGGAGCGCTTAGTGCCGCCTGTTGGGCCGCCTTGATGT
GGATTGGGGAGGAAGGGTACGTGACGCGCGCACGTGACGTCCTCCTGACA
GCCAGACGGATCGCCCAGGGCGTGCGTAACGGCATTCCAGGCGTTGAATT
GCAAGGGTCGGGGGAAGCGATGATAGTGTGTGTGGGAGGAAGGGAGGGCG
TGGACATCTATGAGGTGGGCGACCGCATGGCCCAAAGAGGGTGGAACCTC
AATGCTCTCCAGGCTCCCGCAGGCCTACATTTATGCTGTACCTTACGACA
TGTCGGGAAGGAGGAAAGATTCCTGAAGCACTTGACGGAGTCCGCGGCGG
AGGTGATGGCGGAGGGAGGCAAGGAGGGAGGGAGGAAGGGAGGAAAGGAG
GGGAATTCGGCGATTTATGGGATGGCGGCCACATTACCTGCGGGGCCAAT
CAATGAAATGCTGAAAGTGTACACAGACTGTGTGCTCAAGGCTTGAGGGG

Coding sequence (CDS) from alignment at scaffold_16:228303..230552+

>mRNA_7073 ID=mRNA_7073|Name=jgi.p|Nanoce1779_2|595516|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_16:228303..230552+ (Nannochloropsis oceanica)
ATGAAAACCCTCTTCTTCTCCACTTCCTCCTCCACAAACGCCAGCGCAAC
TCCCCTCCCTCCGTCCCTTCTCACTCACATCCTTGTCATGATTTCTGACA
TCCTTTCCTCGCCAGCCCATGCCCCATTCCTTATCCTCTTGCAAGACATT
CTTGCTCTCTTCCTTCTGCTCGGCGGCATCCACGGCGTGCGCGGCGCCCG
TCGACTGCAATGGGCTGCCGTTAAAGCCAACGTAGGAGACAGCTTCTTCG
ACCTCATCAAAGATTTTGGACCGGTCCGAAGAAAACTGGAGGAGGAAACC
CGCAAGTTAGAAACGACCATGGAACACTCCTTGAGGCCCCCGGGATGGAA
TGGCGAGGCAGGGCAGCAGGGCGGGAGGAAGGAGGGGGCCAAGCCTGCCT
TGCCCCCAAAAGGGGTACCAGCCGAGGAGCTTCTCCGGCAGATGAAATCG
TTTGTGGGAAAGGAGGAAGGGAAATGGAAGGACGGGTGGGTTTCGGGTGC
TGTCTATGGAGGGGAGGAAGAAGTGGTGGCCCTGATGGGGGAGGCGAGCG
CCCTGTACGCGTTGACAAACCCTCTGCACCCAGACCTGTGGCCGAGCGTG
ATGAAATTTGAGAGTGAGGTGTGTGGAATGGTGTGCAAGATGGTTAACGG
CGGGGATGAGGGCGTGGTGGGGTGTTTGACCTCGGGAGGAACCGAATCAA
TAATGCTTGCGGCTAAGGCGCATAGGGACTGGGCTCGTGCAGAGAAGGGG
GTAGGAGGGCATGAGGGCGAGATAGTCGCGTGTGTTTCTGCGCATGCAGC
CATTCATAAAGCCGCGGATGTGATGGGGTTGCGACTGGTGCTTGTGCCCA
TGGACCCGACCACGTTTAAAGTCGACGTGAAGGCAATGGAGGCCGCCATC
ACCTCGAGCACGGTGTTGCTGTACGCCAGCGCGCCCACGTTTGCTCAAGG
CGTAATTGATGGCGTGAGTGATGTTTCTCGACTCGGTCTAAAATACTCGG
TGGGTGTGCATGTTGACTGCTGCTTGGGCGGGTTCTTGCTTCCCTTTGCC
CGCAAAGCAGGGGTGATGGACATTCCTCCTTTTGACTTTTCGCTCCCCGG
GGTCACTTCCATGAGCGTGGATACGCACAAATACGGCTATGCTGCCAAAG
GCACCTCCGTAGTGTGTTACCGTAACCAAACCCTCCGTCACCACCAATAC
TTCTGCTTTCCCTCGTGGACGGGTGGTCTGTATGTGACCCCGACACTGGC
AGGCTCGCGTCCGGGAGCGCTTAGTGCCGCCTGTTGGGCCGCCTTGATGT
GGATTGGGGAGGAAGGGTACGTGACGCGCGCACGTGACGTCCTCCTGACA
GCCAGACGGATCGCCCAGGGCGTGCGTAACGGCATTCCAGGCGTTGAATT
GCAAGGGTCGGGGGAAGCGATGATAGTGTGTGTGGGAGGAAGGGAGGGCG
TGGACATCTATGAGGTGGGCGACCGCATGGCCCAAAGAGGGTGGAACCTC
AATGCTCTCCAGGCTCCCGCAGGCCTACATTTATGCTGTACCTTACGACA
TGTCGGGAAGGAGGAAAGATTCCTGAAGCACTTGACGGAGTCCGCGGCGG
AGGTGATGGCGGAGGGAGGCAAGGAGGGAGGGAGGAAGGGAGGAAAGGAG
GGGAATTCGGCGATTTATGGGATGGCGGCCACATTACCTGCGGGGCCAAT
CAATGAAATGCTGAAAGTGTACACAGACTGTGTGCTCAAGGCTTGA

Synonyms

Publications