jgi.p|Nanoce1779_2|595516, gene_7073 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595516
Unique Namegene_7073
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_16:228303..230552 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595602
ProteinId595516
Product nameputative sphingosine-1-phosphate lyase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:228303..230552 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008117sphinganine-1-phosphate aldolase activity
GO:0016831carboxy-lyase activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0019752carboxylic acid metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL025ncniL025Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00750NO22G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595516mRNA_7073-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595516mRNA_7073Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|595516

>mRNA_7073-protein ID=mRNA_7073-protein|Name=jgi.p|Nanoce1779_2|595516|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MKTLFFSTSSSTNASATPLPPSLLTHILVMISDILSSPAHAPFLILLQDI
LALFLLLGGIHGVRGARRLQWAAVKANVGDSFFDLIKDFGPVRRKLEEET
RKLETTMEHSLRPPGWNGEAGQQGGRKEGAKPALPPKGVPAEELLRQMKS
FVGKEEGKWKDGWVSGAVYGGEEEVVALMGEASALYALTNPLHPDLWPSV
MKFESEVCGMVCKMVNGGDEGVVGCLTSGGTESIMLAAKAHRDWARAEKG
VGGHEGEIVACVSAHAAIHKAADVMGLRLVLVPMDPTTFKVDVKAMEAAI
TSSTVLLYASAPTFAQGVIDGVSDVSRLGLKYSVGVHVDCCLGGFLLPFA
RKAGVMDIPPFDFSLPGVTSMSVDTHKYGYAAKGTSVVCYRNQTLRHHQY
FCFPSWTGGLYVTPTLAGSRPGALSAACWAALMWIGEEGYVTRARDVLLT
ARRIAQGVRNGIPGVELQGSGEAMIVCVGGREGVDIYEVGDRMAQRGWNL
NALQAPAGLHLCCTLRHVGKEERFLKHLTESAAEVMAEGGKEGGRKGGKE
GNSAIYGMAATLPAGPINEMLKVYTDCVLKA*
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Synonyms
Publications