jgi.p|Nanoce1779_2|557893, mRNA_6908 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557893
Unique NamemRNA_6908
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_17:403070..404062 -

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Properties
Property NameValue
TranscriptId557979
TrackFilteredModels2
ProteinId557893
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:403070..404062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557893gene_6908Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6908CDS_6908Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557893mRNA_6908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6908 ID=mRNA_6908|Name=jgi.p|Nanoce1779_2|557893|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
CTTCACTTTTTTTCATATTTCACCATCACTTTTTCCTCCATTCTCTCCTT
CCTTGGAGGCAAAATGAGCAGCAGCAGTAGCAGCAGGACGTTAGAAATCT
CTTTGTTCCAGAGCAACGCACCGGGCTGCTATGGAAGCTGGACTGAAGAG
CAAGCTGAGGCGACATTCGACCGCTGCAGGCGAAGCAAGGAAGGTGGGCC
ATGTTGCAGCACTGAATTTAATTACGAGAAGGATCAATGTCAACACCACC
AGCTGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAACAGTACCAGTAT
AAGGAGGAGAGGCCTGGTCCACACACGGGCCCCAAGGGGGTGTTGGCCGA
CTACAAGGCGCACCAACAGGTCACTAACGCGCTGCGGGCACATGAGCAGG
CCCATCGACAAGCCGTCCTCCTCCGCATCGCCCGTGGCAGCAACAGTGGC
ACCATCACCAGCATAACTTCGCCACATTTACTGCCGATTTATGAGAGGAA
CGACAATGACAGTAATGATGACGACGATTTATTCTTGCGGAATTACCGTG
CACAGCGCCTCAATGACCTGAAGCTGCAGCAGCAGCAGCAACAACAACAA
GACTCCCTCCTCCATCGCCCCCGTTTTGGGGGCGTAGAGGAAGTGTCCGG
CTCAAGGATGGTGGAAATGATTGAGACTTTACGGAATTCTTCTCCTTGCA
CGAAAACCATCGTGCATATTTACGAAAGCCACCTCCCGGCCTGTCGCTTG
GTCAATTCCTTCCTCCCCCACCTTGCCGCCAAGCACCCTTTTGTTAGCTT
CCTCCGTTTGCACCAAGGCTTCAATCTACCACGGCATGATTTAAAATTGG
ATGAAGAGGCCTTGCCGTTGTTGCTAGTTTATGATGGAGGGGATGTGAAG
GAGTGTGTGGCGAGGGTTGACAATTACTTGGGGGCGGCATTTTTGTGCGA
GGATCTGGAGGGGCTGTTGGAGGAGAAGGGGGTATGGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|557893

>mRNA_6908-protein ID=mRNA_6908-protein|Name=jgi.p|Nanoce1779_2|557893|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MSSSSSSRTLEISLFQSNAPGCYGSWTEEQAEATFDRCRRSKEGGPCCST
EFNYEKDQCQHHQLQQQQQQQQRQQQYQYKEERPGPHTGPKGVLADYKAH
QQVTNALRAHEQAHRQAVLLRIARGSNSGTITSITSPHLLPIYERNDNDS
NDDDDLFLRNYRAQRLNDLKLQQQQQQQQDSLLHRPRFGGVEEVSGSRMV
EMIETLRNSSPCTKTIVHIYESHLPACRLVNSFLPHLAAKHPFVSFLRLH
QGFNLPRHDLKLDEEALPLLLVYDGGDVKECVARVDNYLGAAFLCEDLEG
LLEEKGVWG*
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mRNA from alignment at scaffold_17:403070..404062-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6908 ID=mRNA_6908|Name=jgi.p|Nanoce1779_2|557893|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_17:403070..404062- (Nannochloropsis oceanica)
CTTCACTTTTTTTCATATTTCACCATCACTTTTTCCTCCATTCTCTCCTT
CCTTGGAGGCAAAATGAGCAGCAGCAGTAGCAGCAGGACGTTAGAAATCT
CTTTGTTCCAGAGCAACGCACCGGGCTGCTATGGAAGCTGGACTGAAGAG
CAAGCTGAGGCGACATTCGACCGCTGCAGGCGAAGCAAGGAAGGTGGGCC
ATGTTGCAGCACTGAATTTAATTACGAGAAGGATCAATGTCAACACCACC
AGCTGCAGCAGCAGCAGCAGCAGCAGCAACGACAACAACAGTACCAGTAT
AAGGAGGAGAGGCCTGGTCCACACACGGGCCCCAAGGGGGTGTTGGCCGA
CTACAAGGCGCACCAACAGGTCACTAACGCGCTGCGGGCACATGAGCAGG
CCCATCGACAAGCCGTCCTCCTCCGCATCGCCCGTGGCAGCAACAGTGGC
ACCATCACCAGCATAACTTCGCCACATTTACTGCCGATTTATGAGAGGAA
CGACAATGACAGTAATGATGACGACGATTTATTCTTGCGGAATTACCGTG
CACAGCGCCTCAATGACCTGAAGCTGCAGCAGCAGCAGCAACAACAACAA
GACTCCCTCCTCCATCGCCCCCGTTTTGGGGGCGTAGAGGAAGTGTCCGG
CTCAAGGATGGTGGAAATGATTGAGACTTTACGGAATTCTTCTCCTTGCA
CGAAAACCATCGTGCATATTTACGAAAGCCACCTCCCGGCCTGTCGCTTG
GTCAATTCCTTCCTCCCCCACCTTGCCGCCAAGCACCCTTTTGTTAGCTT
CCTCCGTTTGCACCAAGGCTTCAATCTACCACGGCATGATTTAAAATTGG
ATGAAGAGGCCTTGCCGTTGTTGCTAGTTTATGATGGAGGGGATGTGAAG
GAGTGTGTGGCGAGGGTTGACAATTACTTGGGGGCGGCATTTTTGTGCGA
GGATCTGGAGGGGCTGTTGGAGGAGAAGGGGGTATGGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_17:403070..404062-

>mRNA_6908 ID=mRNA_6908|Name=jgi.p|Nanoce1779_2|557893|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_17:403070..404062- (Nannochloropsis oceanica)
ATGAGCAGCAGCAGTAGCAGCAGGACGTTAGAAATCTCTTTGTTCCAGAG
CAACGCACCGGGCTGCTATGGAAGCTGGACTGAAGAGCAAGCTGAGGCGA
CATTCGACCGCTGCAGGCGAAGCAAGGAAGGTGGGCCATGTTGCAGCACT
GAATTTAATTACGAGAAGGATCAATGTCAACACCACCAGCTGCAGCAGCA
GCAGCAGCAGCAGCAACGACAACAACAGTACCAGTATAAGGAGGAGAGGC
CTGGTCCACACACGGGCCCCAAGGGGGTGTTGGCCGACTACAAGGCGCAC
CAACAGGTCACTAACGCGCTGCGGGCACATGAGCAGGCCCATCGACAAGC
CGTCCTCCTCCGCATCGCCCGTGGCAGCAACAGTGGCACCATCACCAGCA
TAACTTCGCCACATTTACTGCCGATTTATGAGAGGAACGACAATGACAGT
AATGATGACGACGATTTATTCTTGCGGAATTACCGTGCACAGCGCCTCAA
TGACCTGAAGCTGCAGCAGCAGCAGCAACAACAACAAGACTCCCTCCTCC
ATCGCCCCCGTTTTGGGGGCGTAGAGGAAGTGTCCGGCTCAAGGATGGTG
GAAATGATTGAGACTTTACGGAATTCTTCTCCTTGCACGAAAACCATCGT
GCATATTTACGAAAGCCACCTCCCGGCCTGTCGCTTGGTCAATTCCTTCC
TCCCCCACCTTGCCGCCAAGCACCCTTTTGTTAGCTTCCTCCGTTTGCAC
CAAGGCTTCAATCTACCACGGCATGATTTAAAATTGGATGAAGAGGCCTT
GCCGTTGTTGCTAGTTTATGATGGAGGGGATGTGAAGGAGTGTGTGGCGA
GGGTTGACAATTACTTGGGGGCGGCATTTTTGTGCGAGGATCTGGAGGGG
CTGTTGGAGGAGAAGGGGGTATGGGGGTAG
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Synonyms
Publications