jgi.p|Nanoce1779_2|115976, mRNA_6888 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|115976
Unique Name	mRNA_6888
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2482
Alignment location	scaffold_17:353331..355812 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	116062
Track	FilteredModels2
ProteinId	115976

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:353331..355812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|115976	gene_6888	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|115976	mRNA_6888-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6888	CDS_6888	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:353331..355812-
coding sequence from alignment at scaffold_17:353331..355812-

mRNA sequence

>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Nanoce1779_2|115976|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp
ATTTCTTCCAGCTTTGCAATGTAATGTCTTCAATCTTACTAACTGTGCTA
TGGGAGCTGGTTCGTTACCGTCACGGTATTTCCTTGAGTCGCTGACTGAG
GTGCCAATCAGTCCTGTTTTTCTCTTGCCGCACGCTCTACTCAGTCACCT
TTACCTCAGGCAGGCTTATGAATTCTACATTCCTCACCACAAAAACACAC
AGAGACACGTGGTTCCCGTCGTGTGCCGATCGTCGCCGTTGGCAGACGAA
AAGAAGAGCAGCAGCATCATCATGGTAAGTTTGACAAATGCCGATGGGAG
CAAGCGAACGATAGAGGAAAGCAGGGCGGTCTCGCATGCGTGTGTCGGTG
TGTGTGCATGTCTGTGTGTAGATTGTGATGCTAGAGACACAAGGCAGGCA
GGCAGGTACACATCGGACTAAAAAACCTATAATTTTCACTCCAGGTGCTG
ACACGGGGCAAGAAGGCTAAGAGCGACGCGGGGGGGGCTGCCCCGTCTCC
TTCTACCACCTCAACCAACGGCCATAAGTTTCGCCGGGCCTCCTCCTCCT
CCTCTGATGCCACTGTGGCCCCTGTAAAGACCCCCAAGAGCAGCCGCAGC
CCATTTGCTGAAATTAAGCGCCTAACGTCCTTCCGCAGAAGCAAGGCCTC
TGAAGCAGAGCCTGCAGTGGAGACGGCCTCGACTTCCTCTTCATCCTCCT
CTTCCTCTCCCTCTGTATCTCCCCTTAGCCCCCTCGCCGTGCTCGACCGC
CCCTTTTCAACCGTCGAGGGTTTAGAGGACCATCCCATGTCTTATGAACG
AGGGCACGAAATTCCCATCACGTGGTTTGCTGCCATATCCACCTATTTTG
GCTATGCCGTCTTGATTCTCTTTGGGCACATTCGTGATTTTTTTGGAAGG
TTGTTTGGGGTGTCACGGTACTTGGCCACGCAGCCTCCACCGGGTTACGC
GCCGCTGTTGAAGGATTGGGAGAATTTTTACACCCGGCGACTGTATCATC
GGATCAGGGATTGCTGGGAGAGGCCAGTGTGTAGTGCCCCGGGGGGAAGG
ATCACAGTTGTGGAACGGGATTCACCGGATGGAAATAAAACGATGGTATT
GACGGAGCGGACGAGGGAGTGCATGAATTTGGGGAGTTACAATTATTTGG
GATTCGCGGATGATTGGCAGACAAGTTGTAAGGCCGAAGTGATGCCAACG
CTTGATACCTTGAATAGTTGCTTGTGCTCGGCGAGGATGGATTTGGGGAC
TTCGAAAGCACATGTGGAGCTGGAGGAGTTGGTGGCGCGGTACGTAGGGA
AGGAAGCGGCGTTGGTGTACAATATGGGCTTTGGGACGAATTCAACGACG
ATCCCGGCGTTGGTGGGGAAAGGGAGTTTAATCCTGAGCGACACGATGAA
CCACTCGTCGATCGTGGCGGGGTCGAGGGCAAGTGGTGCTATGGTCCGCA
CGTTTGTCCACAACAATGCGAAGAGTCTTGAGAGGGTGTTGAGGGATGCG
ATTGCGGGGGGCATGCCACGGACGCGTCGGCCGTGGAAGAAGATTCTGGT
GATGGTGGAGGGGATCTATTCAATGGAGGGGGAGATTTGTGACCTCAAGG
GCATTGTGGAGGTGGTGAAGAAATTTGGCGCGTATTTGTACGTGGACGAG
GCGCATTCGATAGGGGCGTTGGGAGAGACGGGGAGGGGGATTTGCGAGTA
CGCGGGCGTGGATCCGAAGGATGTGGACGTGATGATGGGGACGTTCACGA
AGAGCTTTGGGGGGATGGGGGGGTACGTCGCAGGGGACCGCAAGATGATC
CAGTACCTGCGGCGAGCGAGCGCGGGGAGTATGTATCACAATAGCCTGAG
TCCGGTGGTGTGTAAGCAGGTTCACCAGGCCTTGAGGGTGATCATGGGTG
AGGATGGCACAATGACTGGGAGGAGGAAAATTGAGGCTTTGCGGAACAAC
TCGAATCATATGAGGAGGGAGTTGGTGCGGATGGGTTGTCATGTATACGG
TGATTATGACTCGCCGATTATTCCAGTGATGCTTTACAACCCTACGAAGA
TTGCAGCGTTTTCACGAGAGGCGTTTGCGCGCGGGTTGGCGGTGGTGGTT
GTGGGTTTCCCAGCGACGCCGATCGTGTTGTCACGGACCAGGATTTGCGT
GAGTGCGGGGCATACGCGTGAGGAGATTGAGCGGGCGTTGAATGTGATAG
AGGAGTTGGTGGATTTACTAAGGCTGCGGTATGCGAAGAGGGCGATGGGA
TAGGTGGAAAGGAGGAAGAAGAGAGAGAGAAAGAACACAGAGAGAGAAGA
GAGAGAGAGAGAGAGGGAAAGCGGTGAGAGAGAGCGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAGAGAGAGAAGAGAGAGAGAAGAGAGAGGGAGA
GGGGAAGGGTCGGTGCAGACGATGAGTCTAAAGACTGTAGAGGCATAGCG
GGGGGGGGGCAAAGGAAAAAGTGGAGGACGAT

protein sequence of jgi.p|Nanoce1779_2|115976

>mRNA_6888-protein ID=mRNA_6888-protein|Name=jgi.p|Nanoce1779_2|115976|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MSYERGHEIPITWFAAISTYFGYAVLILFGHIRDFFGRLFGVSRYLATQP
PPGYAPLLKDWENFYTRRLYHRIRDCWERPVCSAPGGRITVVERDSPDGN
KTMVLTERTRECMNLGSYNYLGFADDWQTSCKAEVMPTLDTLNSCLCSAR
MDLGTSKAHVELEELVARYVGKEAALVYNMGFGTNSTTIPALVGKGSLIL
SDTMNHSSIVAGSRASGAMVRTFVHNNAKSLERVLRDAIAGGMPRTRRPW
KKILVMVEGIYSMEGEICDLKGIVEVVKKFGAYLYVDEAHSIGALGETGR
GICEYAGVDPKDVDVMMGTFTKSFGGMGGYVAGDRKMIQYLRRASAGSMY
HNSLSPVVCKQVHQALRVIMGEDGTMTGRRKIEALRNNSNHMRRELVRMG
CHVYGDYDSPIIPVMLYNPTKIAAFSREAFARGLAVVVVGFPATPIVLSR
TRICVSAGHTREEIERALNVIEELVDLLRLRYAKRAMG*

mRNA from alignment at scaffold_17:353331..355812-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Nanoce1779_2|115976|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp|location=Sequence derived from alignment at scaffold_17:353331..355812- (Nannochloropsis oceanica)
ATTTCTTCCAGCTTTGCAATGTAATGTCTTCAATCTTACTAACTGTGCTA
TGGGAGCTGGTTCGTTACCGTCACGGTATTTCCTTGAGTCGCTGACTGAG
GTGCCAATCAGTCCTGTTTTTCTCTTGCCGCACGCTCTACTCAGTCACCT
TTACCTCAGGCAGGCTTATGAATTCTACATTCCTCACCACAAAAACACAC
AGAGACACGTGGTTCCCGTCGTGTGCCGATCGTCGCCGTTGGCAGACGAA
AAGAAGAGCAGCAGCATCATCATGGTAAGTTTGACAAATGCCGATGGGAG
CAAGCGAACGATAGAGGAAAGCAGGGCGGTCTCGCATGCGTGTGTCGGTG
TGTGTGCATGTCTGTGTGTAGATTGTGATGCTAGAGACACAAGGCAGGCA
GGCAGGTACACATCGGACTAAAAAACCTATAATTTTCACTCCAGGTGCTG
ACACGGGGCAAGAAGGCTAAGAGCGACGCGGGGGGGGCTGCCCCGTCTCC
TTCTACCACCTCAACCAACGGCCATAAGTTTCGCCGGGCCTCCTCCTCCT
CCTCTGATGCCACTGTGGCCCCTGTAAAGACCCCCAAGAGCAGCCGCAGC
CCATTTGCTGAAATTAAGCGCCTAACGTCCTTCCGCAGAAGCAAGGCCTC
TGAAGCAGAGCCTGCAGTGGAGACGGCCTCGACTTCCTCTTCATCCTCCT
CTTCCTCTCCCTCTGTATCTCCCCTTAGCCCCCTCGCCGTGCTCGACCGC
CCCTTTTCAACCGTCGAGGGTTTAGAGGACCATCCCATGTCTTATGAACG
AGGGCACGAAATTCCCATCACGTGGTTTGCTGCCATATCCACCTATTTTG
GCTATGCCGTCTTGATTCTCTTTGGGCACATTCGTGATTTTTTTGGAAGG
TTGTTTGGGGTGTCACGGTACTTGGCCACGCAGCCTCCACCGGGTTACGC
GCCGCTGTTGAAGGATTGGGAGAATTTTTACACCCGGCGACTGTATCATC
GGATCAGGGATTGCTGGGAGAGGCCAGTGTGTAGTGCCCCGGGGGGAAGG
ATCACAGTTGTGGAACGGGATTCACCGGATGGAAATAAAACGATGGTATT
GACGGAGCGGACGAGGGAGTGCATGAATTTGGGGAGTTACAATTATTTGG
GATTCGCGGATGATTGGCAGACAAGTTGTAAGGCCGAAGTGATGCCAACG
CTTGATACCTTGAATAGTTGCTTGTGCTCGGCGAGGATGGATTTGGGGAC
TTCGAAAGCACATGTGGAGCTGGAGGAGTTGGTGGCGCGGTACGTAGGGA
AGGAAGCGGCGTTGGTGTACAATATGGGCTTTGGGACGAATTCAACGACG
ATCCCGGCGTTGGTGGGGAAAGGGAGTTTAATCCTGAGCGACACGATGAA
CCACTCGTCGATCGTGGCGGGGTCGAGGGCAAGTGGTGCTATGGTCCGCA
CGTTTGTCCACAACAATGCGAAGAGTCTTGAGAGGGTGTTGAGGGATGCG
ATTGCGGGGGGCATGCCACGGACGCGTCGGCCGTGGAAGAAGATTCTGGT
GATGGTGGAGGGGATCTATTCAATGGAGGGGGAGATTTGTGACCTCAAGG
GCATTGTGGAGGTGGTGAAGAAATTTGGCGCGTATTTGTACGTGGACGAG
GCGCATTCGATAGGGGCGTTGGGAGAGACGGGGAGGGGGATTTGCGAGTA
CGCGGGCGTGGATCCGAAGGATGTGGACGTGATGATGGGGACGTTCACGA
AGAGCTTTGGGGGGATGGGGGGGTACGTCGCAGGGGACCGCAAGATGATC
CAGTACCTGCGGCGAGCGAGCGCGGGGAGTATGTATCACAATAGCCTGAG
TCCGGTGGTGTGTAAGCAGGTTCACCAGGCCTTGAGGGTGATCATGGGTG
AGGATGGCACAATGACTGGGAGGAGGAAAATTGAGGCTTTGCGGAACAAC
TCGAATCATATGAGGAGGGAGTTGGTGCGGATGGGTTGTCATGTATACGG
TGATTATGACTCGCCGATTATTCCAGTGATGCTTTACAACCCTACGAAGA
TTGCAGCGTTTTCACGAGAGGCGTTTGCGCGCGGGTTGGCGGTGGTGGTT
GTGGGTTTCCCAGCGACGCCGATCGTGTTGTCACGGACCAGGATTTGCGT
GAGTGCGGGGCATACGCGTGAGGAGATTGAGCGGGCGTTGAATGTGATAG
AGGAGTTGGTGGATTTACTAAGGCTGCGGTATGCGAAGAGGGCGATGGGA
TAGGTGGAAAGGAGGAAGAAGAGAGAGAGAAAGAACACAGAGAGAGAAGA
GAGAGAGAGAGAGAGGGAAAGCGGTGAGAGAGAGCGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAAGAGAGAGAAGAGAGAGAGAAGAGAGAGGGAGA
GGGGAAGGGTCGGTGCAGACGATGAGTCTAAAGACTGTAGAGGCATAGCG
GGGGGGGGGCAAAGGAAAAAGTGGAGGACGAT

Coding sequence (CDS) from alignment at scaffold_17:353331..355812-

>mRNA_6888 ID=mRNA_6888|Name=jgi.p|Nanoce1779_2|115976|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_17:353331..355812- (Nannochloropsis oceanica)
ATGTCTTATGAACGAGGGCACGAAATTCCCATCACGTGGTTTGCTGCCAT
ATCCACCTATTTTGGCTATGCCGTCTTGATTCTCTTTGGGCACATTCGTG
ATTTTTTTGGAAGGTTGTTTGGGGTGTCACGGTACTTGGCCACGCAGCCT
CCACCGGGTTACGCGCCGCTGTTGAAGGATTGGGAGAATTTTTACACCCG
GCGACTGTATCATCGGATCAGGGATTGCTGGGAGAGGCCAGTGTGTAGTG
CCCCGGGGGGAAGGATCACAGTTGTGGAACGGGATTCACCGGATGGAAAT
AAAACGATGGTATTGACGGAGCGGACGAGGGAGTGCATGAATTTGGGGAG
TTACAATTATTTGGGATTCGCGGATGATTGGCAGACAAGTTGTAAGGCCG
AAGTGATGCCAACGCTTGATACCTTGAATAGTTGCTTGTGCTCGGCGAGG
ATGGATTTGGGGACTTCGAAAGCACATGTGGAGCTGGAGGAGTTGGTGGC
GCGGTACGTAGGGAAGGAAGCGGCGTTGGTGTACAATATGGGCTTTGGGA
CGAATTCAACGACGATCCCGGCGTTGGTGGGGAAAGGGAGTTTAATCCTG
AGCGACACGATGAACCACTCGTCGATCGTGGCGGGGTCGAGGGCAAGTGG
TGCTATGGTCCGCACGTTTGTCCACAACAATGCGAAGAGTCTTGAGAGGG
TGTTGAGGGATGCGATTGCGGGGGGCATGCCACGGACGCGTCGGCCGTGG
AAGAAGATTCTGGTGATGGTGGAGGGGATCTATTCAATGGAGGGGGAGAT
TTGTGACCTCAAGGGCATTGTGGAGGTGGTGAAGAAATTTGGCGCGTATT
TGTACGTGGACGAGGCGCATTCGATAGGGGCGTTGGGAGAGACGGGGAGG
GGGATTTGCGAGTACGCGGGCGTGGATCCGAAGGATGTGGACGTGATGAT
GGGGACGTTCACGAAGAGCTTTGGGGGGATGGGGGGGTACGTCGCAGGGG
ACCGCAAGATGATCCAGTACCTGCGGCGAGCGAGCGCGGGGAGTATGTAT
CACAATAGCCTGAGTCCGGTGGTGTGTAAGCAGGTTCACCAGGCCTTGAG
GGTGATCATGGGTGAGGATGGCACAATGACTGGGAGGAGGAAAATTGAGG
CTTTGCGGAACAACTCGAATCATATGAGGAGGGAGTTGGTGCGGATGGGT
TGTCATGTATACGGTGATTATGACTCGCCGATTATTCCAGTGATGCTTTA
CAACCCTACGAAGATTGCAGCGTTTTCACGAGAGGCGTTTGCGCGCGGGT
TGGCGGTGGTGGTTGTGGGTTTCCCAGCGACGCCGATCGTGTTGTCACGG
ACCAGGATTTGCGTGAGTGCGGGGCATACGCGTGAGGAGATTGAGCGGGC
GTTGAATGTGATAGAGGAGTTGGTGGATTTACTAAGGCTGCGGTATGCGA
AGAGGGCGATGGGATAG

Synonyms

Publications