jgi.p|Nanoce1779_2|596616, mRNA_6871 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596616
Unique Name	mRNA_6871
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1896
Alignment location	scaffold_17:303574..305469 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596702
Track	FilteredModels2
ProteinId	596616

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:303574..305469 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596616	gene_6871	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596616	mRNA_6871-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6871	CDS_6871	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:303574..305469+
coding sequence from alignment at scaffold_17:303574..305469+

mRNA sequence

>mRNA_6871 ID=mRNA_6871|Name=jgi.p|Nanoce1779_2|596616|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp
CCATATCGCAACCGCCATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGG
CGTTCTTGCTCGGCGTTTCTTCAGGTACGCGGGGGCTTACGTGGCAAGTG
GAGGAGGAGAGGTCGTCTCTTTTAAACTATCAGTGCTGATTGCGCCTACG
TCCCTTACTTACAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAG
CAGCAGTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGC
GGCAGCAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAA
CACCTCCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGT
CTGCGGTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCC
GTTGTACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGG
TGCTGTAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTA
GAAGGGCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCT
ACAGTTTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTC
AGCTTCTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCA
CAAAGACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCC
ACTACTACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGC
CACTCGCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGC
TTCCCGTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCA
AACGCCGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAA
ATTGTATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGC
CTTACCTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCA
CACACCCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGT
TTTGGTCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATG
TGCTGCATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATT
GGCACGCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGG
GGGGCATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAG
TTACCATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGA
AGTTTAACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGA
TGGAACGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTC
CTAATGCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAG
GTGGCAGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGA
GTTGATTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCC
AGCGGACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTAT
CGAGCGGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTT
CAGTGTGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAAC
TTCCGATTGTGTGGTAAGGGGTGGGGTGATATGTAGAATATGATCAATCA
CCTTTGCATGTTAAGTATTGAAGGAAGAGAATGTGTGGTATACTGACGGA
AGAGCTGCTATCGAAAGGTGGCAGTGTTGCAAGAGTTTGGGAGAGTTTGG
GATAAGAAGCCATGTTGAACAAAACAAAAACCTCACACAATTGCGT

protein sequence of jgi.p|Nanoce1779_2|596616

>mRNA_6871-protein ID=mRNA_6871-protein|Name=jgi.p|Nanoce1779_2|596616|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MPKRFKASSGGSSGSTSISTNTNTNTNTSINNNNGGGDDSISSSAVSSSR
RRKHEIVYGAVVPKALTLAAKQAAASGAVTSAVAKETALATTTRRARAVE
STTSDAASMSTVSRSAAPKRATTTSASASSSPATAAPSSTSTTTKTPKKK
TQSASTSSMSTTTAITTATTATSTTTATRNATSTSSKKIKTIPLPVPPAI
AAAALAAARANAAAVSNTPILLHTLPKLYFATVVHRPSKVCKSPYLCDIQ
VKGQTSLTMAHTPSLGCSGLVSPGAEVLVSESTSKSSTTKSTHVLHHVVK
REDDGTSHWIGTHPMTANILAEALLIGGHVFPNLPPVENVQKEVTMGNSR
FDFVVTHSDGSLTVVETKNVPVADNFDGTKKERAALLAACEEAPNAYGKV
AIFPDGYRKKVADPVSPRALKHVQELELIAQEGGKRACLLFVSQRTDVAS
FVVASTDVQYRAAVQKAANNGVVLKAFSVRWDGATGRAYLHTELPIVW*

mRNA from alignment at scaffold_17:303574..305469+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6871 ID=mRNA_6871|Name=jgi.p|Nanoce1779_2|596616|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at scaffold_17:303574..305469+ (Nannochloropsis oceanica)
CCATATCGCAACCGCCATCATTATCCTGTCCCGCGTCGTTGTGCTCAGGG
CGTTCTTGCTCGGCGTTTCTTCAGGTACGCGGGGGCTTACGTGGCAAGTG
GAGGAGGAGAGGTCGTCTCTTTTAAACTATCAGTGCTGATTGCGCCTACG
TCCCTTACTTACAGTCCAACGCTCGTCATCACCGTCGTCGTCGTCTGCAG
CAGCAGTAGCCTTCGCAATCATGCCCAAGAGGTTTAAAGCCAGCAGCGGC
GGCAGCAGCGGCAGCACCAGCATCAGCACCAACACCAACACCAACACCAA
CACCTCCATCAACAACAACAACGGCGGCGGTGACGATTCCATATCATCGT
CTGCGGTATCCTCGTCGCGGCGGCGCAAGCATGAGATTGTATATGGTGCC
GTTGTACCGAAAGCTCTTACCTTAGCAGCCAAGCAAGCCGCTGCGTCTGG
TGCTGTAACCTCTGCTGTAGCGAAAGAGACGGCGCTTGCGACGACGACTA
GAAGGGCAAGGGCTGTCGAGAGCACGACCAGTGACGCTGCGTCCATGTCT
ACAGTTTCCCGTAGTGCTGCTCCAAAGCGCGCCACCACTACCTCTGCCTC
AGCTTCTTCCTCTCCAGCCACTGCAGCTCCTAGCAGTACCTCTACGACCA
CAAAGACCCCCAAGAAAAAGACGCAATCCGCCAGCACTTCCTCCATGTCC
ACTACTACTGCTATTACTACTGCTACAACAGCTACTTCAACCACAACTGC
CACTCGCAATGCCACCAGCACGAGTTCCAAGAAAATAAAAACAATTCCGC
TTCCCGTCCCCCCAGCTATCGCCGCCGCCGCTCTCGCAGCCGCGCGTGCA
AACGCCGCCGCTGTTTCCAACACCCCCATCCTCCTCCACACACTTCCCAA
ATTGTATTTCGCCACGGTTGTGCACCGTCCATCGAAAGTGTGTAAATCGC
CTTACCTCTGTGATATCCAAGTGAAGGGTCAGACATCCCTCACCATGGCA
CACACCCCCTCCCTCGGGTGCTCTGGCCTAGTATCACCGGGCGCTGAGGT
TTTGGTCAGTGAGTCCACCTCCAAATCGAGCACTACCAAATCAACGCATG
TGCTGCATCATGTCGTGAAGAGAGAGGATGATGGGACGAGCCACTGGATT
GGCACGCACCCCATGACGGCCAACATCTTGGCAGAAGCCTTGTTGATTGG
GGGGCATGTTTTTCCCAATCTCCCACCTGTGGAGAATGTGCAAAAAGAAG
TTACCATGGGGAATTCTCGCTTCGACTTCGTGGTTACGCATAGTGATGGA
AGTTTAACTGTAGTCGAAACGAAAAATGTCCCTGTTGCGGATAACTTCGA
TGGAACGAAAAAGGAACGTGCCGCGCTCTTGGCAGCGTGTGAGGAGGCTC
CTAATGCATATGGGAAGGTGGCCATTTTTCCTGATGGGTACAGGAAGAAG
GTGGCAGACCCTGTGTCTCCTCGTGCATTAAAACATGTTCAGGAGTTGGA
GTTGATTGCCCAGGAAGGAGGAAAGAGGGCGTGTCTTTTGTTTGTTTCCC
AGCGGACAGACGTGGCGTCGTTTGTGGTGGCCTCGACCGATGTGCAGTAT
CGAGCGGCGGTGCAAAAAGCGGCGAACAATGGAGTGGTTCTAAAGGCTTT
CAGTGTGCGGTGGGATGGGGCGACTGGTCGGGCGTACTTGCACACAGAAC
TTCCGATTGTGTGGTAAGGGGTGGGGTGATATGTAGAATATGATCAATCA
CCTTTGCATGTTAAGTATTGAAGGAAGAGAATGTGTGGTATACTGACGGA
AGAGCTGCTATCGAAAGGTGGCAGTGTTGCAAGAGTTTGGGAGAGTTTGG
GATAAGAAGCCATGTTGAACAAAACAAAAACCTCACACAATTGCGT

Coding sequence (CDS) from alignment at scaffold_17:303574..305469+

>mRNA_6871 ID=mRNA_6871|Name=jgi.p|Nanoce1779_2|596616|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_17:303574..305469+ (Nannochloropsis oceanica)
ATGCCCAAGAGGTTTAAAGCCAGCAGCGGCGGCAGCAGCGGCAGCACCAG
CATCAGCACCAACACCAACACCAACACCAACACCTCCATCAACAACAACA
ACGGCGGCGGTGACGATTCCATATCATCGTCTGCGGTATCCTCGTCGCGG
CGGCGCAAGCATGAGATTGTATATGGTGCCGTTGTACCGAAAGCTCTTAC
CTTAGCAGCCAAGCAAGCCGCTGCGTCTGGTGCTGTAACCTCTGCTGTAG
CGAAAGAGACGGCGCTTGCGACGACGACTAGAAGGGCAAGGGCTGTCGAG
AGCACGACCAGTGACGCTGCGTCCATGTCTACAGTTTCCCGTAGTGCTGC
TCCAAAGCGCGCCACCACTACCTCTGCCTCAGCTTCTTCCTCTCCAGCCA
CTGCAGCTCCTAGCAGTACCTCTACGACCACAAAGACCCCCAAGAAAAAG
ACGCAATCCGCCAGCACTTCCTCCATGTCCACTACTACTGCTATTACTAC
TGCTACAACAGCTACTTCAACCACAACTGCCACTCGCAATGCCACCAGCA
CGAGTTCCAAGAAAATAAAAACAATTCCGCTTCCCGTCCCCCCAGCTATC
GCCGCCGCCGCTCTCGCAGCCGCGCGTGCAAACGCCGCCGCTGTTTCCAA
CACCCCCATCCTCCTCCACACACTTCCCAAATTGTATTTCGCCACGGTTG
TGCACCGTCCATCGAAAGTGTGTAAATCGCCTTACCTCTGTGATATCCAA
GTGAAGGGTCAGACATCCCTCACCATGGCACACACCCCCTCCCTCGGGTG
CTCTGGCCTAGTATCACCGGGCGCTGAGGTTTTGGTCAGTGAGTCCACCT
CCAAATCGAGCACTACCAAATCAACGCATGTGCTGCATCATGTCGTGAAG
AGAGAGGATGATGGGACGAGCCACTGGATTGGCACGCACCCCATGACGGC
CAACATCTTGGCAGAAGCCTTGTTGATTGGGGGGCATGTTTTTCCCAATC
TCCCACCTGTGGAGAATGTGCAAAAAGAAGTTACCATGGGGAATTCTCGC
TTCGACTTCGTGGTTACGCATAGTGATGGAAGTTTAACTGTAGTCGAAAC
GAAAAATGTCCCTGTTGCGGATAACTTCGATGGAACGAAAAAGGAACGTG
CCGCGCTCTTGGCAGCGTGTGAGGAGGCTCCTAATGCATATGGGAAGGTG
GCCATTTTTCCTGATGGGTACAGGAAGAAGGTGGCAGACCCTGTGTCTCC
TCGTGCATTAAAACATGTTCAGGAGTTGGAGTTGATTGCCCAGGAAGGAG
GAAAGAGGGCGTGTCTTTTGTTTGTTTCCCAGCGGACAGACGTGGCGTCG
TTTGTGGTGGCCTCGACCGATGTGCAGTATCGAGCGGCGGTGCAAAAAGC
GGCGAACAATGGAGTGGTTCTAAAGGCTTTCAGTGTGCGGTGGGATGGGG
CGACTGGTCGGGCGTACTTGCACACAGAACTTCCGATTGTGTGGTAA

Synonyms

Publications