jgi.p|Nanoce1779_2|530936, mRNA_6813 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530936
Unique NamemRNA_6813
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1413
Alignment locationscaffold_17:166125..167537 -

Link to JBrowse

Properties
Property NameValue
TranscriptId531022
TrackFilteredModels2
ProteinId530936
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:166125..167537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530936gene_6813Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6813CDS_6813Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530936mRNA_6813-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6813 ID=mRNA_6813|Name=jgi.p|Nanoce1779_2|530936|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
ATGGCCGCCGAAAACCCCGTGGAGACCAACGACAACAAGGAAAAGAACAA
GGAGGGCCATGATGCCCAACGATATCGTGCCCGGGGCGTGTCCGCCACCA
AGCAAGAGGTTTTGGCTGCTGTCCAGAGCAACGGCGAAAGGCACTCCTCC
GCCGCTTCAGCTTCTTTGTACCCCAGGGCCTTTTGTAAAGTCCTTCCAGA
TATCTGGACCAATGATCCCGCAGCGGCCATCGTCATGCATGCCGACGGTG
CTGGAAGTAAGGCCGCGTTGGCTTATGCCTACTGGCGGGAAACGGGGGAC
TTGTCTGTGTGGAAAGGCATTGCCCAAGATGCCCTAGTCATGAATCTGGA
CGACGTCTATTGCGTGGGGGCCACGCGGGCACCGGGCCTCGTCACCTCCA
CCATTGCCAGAAATCGCCGCATGGTGCCTGGAGAAGTTATCAAGGCTCTC
ATCGAAGGCTTGGAAGAGGTCATGGAGGAGCTTAGACCGTGGGGCGTAGA
CTTGCGATTGGCGGGGGGGGAGACAGCCGACCTGGGAGATCAGGTGCAGA
CGCTGACGGTGGATTGCACCTTAGCCACGCGCATGCCTCGGGCCGACGTT
ATTGACAATGGCAACATTCAAGCAGGAGACTGGATTGTTGGGCTGGCGTC
TTCGGGTTTACCTGCCATGTATGAAGCCAGGAGGCTGTATAACAGTGGTA
TCGGTAGTAATGGATTAACAGCGGCGCGACACGACGTGTTGGCTCCAGAG
GTGGGGCTTCGCTATCCGGAGACGTTCGACCCCGCGCTAAAAGACTTGGC
CTATTGTGGTACCCGACATCTGACTGAATGGATGGACATAGATAAGCAAC
GCATAAGAGTGGGACAGCTCCTCCTATCGCCGACCCGCACATATGCCCCC
GTCCTTGCTAAATTGCTGCATCATGAGGCTGGCCTTCGCGACTACGTGCA
TGGCATCGTGCATTGCAGTGGAGGAGGGCAAACGAAGGTGTTGCGCTGCT
TGGATCCGAGCCGTGCGCCACTGCATTTGGTGAAGAATAATTTGTTTAAA
GTCCCTGATGTGTTTCGACTCATTGCTGAAGAGCAGGAGAAGCATAGAAT
GTTGTGTGGAAGAGGAAATGAAGAAACAAATGGCGCACGGGAGACGGAAT
GGCGAGAAATGTACCAGGTTTTTAATATGGGGCATCGGATGGAGGTGTAT
GTGGGGGGAGGAGAGGAGCAAGCGCAGGGAGTGATTGCTGTTGCGGAGGC
TATGGGTGTGGCGGCCAAGGTGGTGGGGCGGGTGGAGGAGGGAAAGACAG
GAGTGGTTGGCGAAAGACATAGTCTAACGGTTCACCACGTGGGCTTTGGA
GGAGGAGGAGGTGGAGGAGGAGGAGGGCTGGAAGGGGGGGGGGCGAAGTT
TGTATATACGTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|530936

>mRNA_6813-protein ID=mRNA_6813-protein|Name=jgi.p|Nanoce1779_2|530936|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MAAENPVETNDNKEKNKEGHDAQRYRARGVSATKQEVLAAVQSNGERHSS
AASASLYPRAFCKVLPDIWTNDPAAAIVMHADGAGSKAALAYAYWRETGD
LSVWKGIAQDALVMNLDDVYCVGATRAPGLVTSTIARNRRMVPGEVIKAL
IEGLEEVMEELRPWGVDLRLAGGETADLGDQVQTLTVDCTLATRMPRADV
IDNGNIQAGDWIVGLASSGLPAMYEARRLYNSGIGSNGLTAARHDVLAPE
VGLRYPETFDPALKDLAYCGTRHLTEWMDIDKQRIRVGQLLLSPTRTYAP
VLAKLLHHEAGLRDYVHGIVHCSGGGQTKVLRCLDPSRAPLHLVKNNLFK
VPDVFRLIAEEQEKHRMLCGRGNEETNGARETEWREMYQVFNMGHRMEVY
VGGGEEQAQGVIAVAEAMGVAAKVVGRVEEGKTGVVGERHSLTVHHVGFG
GGGGGGGGGLEGGGAKFVYT*
back to top

mRNA from alignment at scaffold_17:166125..167537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6813 ID=mRNA_6813|Name=jgi.p|Nanoce1779_2|530936|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at scaffold_17:166125..167537- (Nannochloropsis oceanica)
ATGGCCGCCGAAAACCCCGTGGAGACCAACGACAACAAGGAAAAGAACAA
GGAGGGCCATGATGCCCAACGATATCGTGCCCGGGGCGTGTCCGCCACCA
AGCAAGAGGTTTTGGCTGCTGTCCAGAGCAACGGCGAAAGGCACTCCTCC
GCCGCTTCAGCTTCTTTGTACCCCAGGGCCTTTTGTAAAGTCCTTCCAGA
TATCTGGACCAATGATCCCGCAGCGGCCATCGTCATGCATGCCGACGGTG
CTGGAAGTAAGGCCGCGTTGGCTTATGCCTACTGGCGGGAAACGGGGGAC
TTGTCTGTGTGGAAAGGCATTGCCCAAGATGCCCTAGTCATGAATCTGGA
CGACGTCTATTGCGTGGGGGCCACGCGGGCACCGGGCCTCGTCACCTCCA
CCATTGCCAGAAATCGCCGCATGGTGCCTGGAGAAGTTATCAAGGCTCTC
ATCGAAGGCTTGGAAGAGGTCATGGAGGAGCTTAGACCGTGGGGCGTAGA
CTTGCGATTGGCGGGGGGGGAGACAGCCGACCTGGGAGATCAGGTGCAGA
CGCTGACGGTGGATTGCACCTTAGCCACGCGCATGCCTCGGGCCGACGTT
ATTGACAATGGCAACATTCAAGCAGGAGACTGGATTGTTGGGCTGGCGTC
TTCGGGTTTACCTGCCATGTATGAAGCCAGGAGGCTGTATAACAGTGGTA
TCGGTAGTAATGGATTAACAGCGGCGCGACACGACGTGTTGGCTCCAGAG
GTGGGGCTTCGCTATCCGGAGACGTTCGACCCCGCGCTAAAAGACTTGGC
CTATTGTGGTACCCGACATCTGACTGAATGGATGGACATAGATAAGCAAC
GCATAAGAGTGGGACAGCTCCTCCTATCGCCGACCCGCACATATGCCCCC
GTCCTTGCTAAATTGCTGCATCATGAGGCTGGCCTTCGCGACTACGTGCA
TGGCATCGTGCATTGCAGTGGAGGAGGGCAAACGAAGGTGTTGCGCTGCT
TGGATCCGAGCCGTGCGCCACTGCATTTGGTGAAGAATAATTTGTTTAAA
GTCCCTGATGTGTTTCGACTCATTGCTGAAGAGCAGGAGAAGCATAGAAT
GTTGTGTGGAAGAGGAAATGAAGAAACAAATGGCGCACGGGAGACGGAAT
GGCGAGAAATGTACCAGGTTTTTAATATGGGGCATCGGATGGAGGTGTAT
GTGGGGGGAGGAGAGGAGCAAGCGCAGGGAGTGATTGCTGTTGCGGAGGC
TATGGGTGTGGCGGCCAAGGTGGTGGGGCGGGTGGAGGAGGGAAAGACAG
GAGTGGTTGGCGAAAGACATAGTCTAACGGTTCACCACGTGGGCTTTGGA
GGAGGAGGAGGTGGAGGAGGAGGAGGGCTGGAAGGGGGGGGGGCGAAGTT
TGTATATACGTAA
back to top

Coding sequence (CDS) from alignment at scaffold_17:166125..167537-

>mRNA_6813 ID=mRNA_6813|Name=jgi.p|Nanoce1779_2|530936|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_17:166125..167537- (Nannochloropsis oceanica)
ATGGCCGCCGAAAACCCCGTGGAGACCAACGACAACAAGGAAAAGAACAA
GGAGGGCCATGATGCCCAACGATATCGTGCCCGGGGCGTGTCCGCCACCA
AGCAAGAGGTTTTGGCTGCTGTCCAGAGCAACGGCGAAAGGCACTCCTCC
GCCGCTTCAGCTTCTTTGTACCCCAGGGCCTTTTGTAAAGTCCTTCCAGA
TATCTGGACCAATGATCCCGCAGCGGCCATCGTCATGCATGCCGACGGTG
CTGGAAGTAAGGCCGCGTTGGCTTATGCCTACTGGCGGGAAACGGGGGAC
TTGTCTGTGTGGAAAGGCATTGCCCAAGATGCCCTAGTCATGAATCTGGA
CGACGTCTATTGCGTGGGGGCCACGCGGGCACCGGGCCTCGTCACCTCCA
CCATTGCCAGAAATCGCCGCATGGTGCCTGGAGAAGTTATCAAGGCTCTC
ATCGAAGGCTTGGAAGAGGTCATGGAGGAGCTTAGACCGTGGGGCGTAGA
CTTGCGATTGGCGGGGGGGGAGACAGCCGACCTGGGAGATCAGGTGCAGA
CGCTGACGGTGGATTGCACCTTAGCCACGCGCATGCCTCGGGCCGACGTT
ATTGACAATGGCAACATTCAAGCAGGAGACTGGATTGTTGGGCTGGCGTC
TTCGGGTTTACCTGCCATGTATGAAGCCAGGAGGCTGTATAACAGTGGTA
TCGGTAGTAATGGATTAACAGCGGCGCGACACGACGTGTTGGCTCCAGAG
GTGGGGCTTCGCTATCCGGAGACGTTCGACCCCGCGCTAAAAGACTTGGC
CTATTGTGGTACCCGACATCTGACTGAATGGATGGACATAGATAAGCAAC
GCATAAGAGTGGGACAGCTCCTCCTATCGCCGACCCGCACATATGCCCCC
GTCCTTGCTAAATTGCTGCATCATGAGGCTGGCCTTCGCGACTACGTGCA
TGGCATCGTGCATTGCAGTGGAGGAGGGCAAACGAAGGTGTTGCGCTGCT
TGGATCCGAGCCGTGCGCCACTGCATTTGGTGAAGAATAATTTGTTTAAA
GTCCCTGATGTGTTTCGACTCATTGCTGAAGAGCAGGAGAAGCATAGAAT
GTTGTGTGGAAGAGGAAATGAAGAAACAAATGGCGCACGGGAGACGGAAT
GGCGAGAAATGTACCAGGTTTTTAATATGGGGCATCGGATGGAGGTGTAT
GTGGGGGGAGGAGAGGAGCAAGCGCAGGGAGTGATTGCTGTTGCGGAGGC
TATGGGTGTGGCGGCCAAGGTGGTGGGGCGGGTGGAGGAGGGAAAGACAG
GAGTGGTTGGCGAAAGACATAGTCTAACGGTTCACCACGTGGGCTTTGGA
GGAGGAGGAGGTGGAGGAGGAGGAGGGCTGGAAGGGGGGGGGGCGAAGTT
TGTATATACGTAA
back to top
Synonyms
Publications