jgi.p|Nanoce1779_2|112329, mRNA_6775 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|112329
Unique Name	mRNA_6775
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1259
Alignment location	scaffold_17:68694..70288 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	112415
Track	FilteredModels2
ProteinId	112329

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:68694..70288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112329	gene_6775	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|112329	mRNA_6775-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6775	CDS_6775	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:68694..70288+
coding sequence from alignment at scaffold_17:68694..70288+

mRNA sequence

>mRNA_6775 ID=mRNA_6775|Name=jgi.p|Nanoce1779_2|112329|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
AAACCCTTTTCATCTGACTGATATATGCTGCCAGACGTTCCACAACTCAC
GACAAGTACCTGCATCACAATCTCTTGCCCGTCTCGCCAGGCGTCAGCAC
TCAGTGGAGAGGATTACACCAAAGTTTCATCCCGTCCTTTACTCCAATAC
TAGACAGACTAGCAGGAACACTTGGAAACCCGTGCGTCGTCAACATGCTG
GTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTTAACACG
TAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCCCAAAAC
CAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATCGCACGT
CGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGCTCTGCT
GGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCGATTTTG
ACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATGGTCGAC
CTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTTGTACAT
GACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGTCGGCAG
GACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGACTTCAAA
TACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTACGGAATT
CCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCGCGCTCA
TTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGGATGGAG
ATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGAAGGTTT
TGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGGCCGGAG
GCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGGGTTACC
TCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGTCCAAAT
GATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGTTTATGA
CTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCTTTTGAC
CCGTTTGCGGATTCGGGCGTTCGTGAGGTCCTTAATGATATTTGGAGCAC
TGTCTGGGGGGACAGATAAGAGAAAGAAAACAAGTATGTGCAGGCGTGCA
TATGGGATGGAAGCCTACCAATTCAACAACCAGAAAGAAAAATATAATGT
GTCAAACAA

protein sequence of jgi.p|Nanoce1779_2|112329

>mRNA_6775-protein ID=mRNA_6775-protein|Name=jgi.p|Nanoce1779_2|112329|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MLVPAMRHSGGRGIISLTRSRLSAQRILTQLVTPKPASRAPEAFLGGVVI
ARRSIFNGLSGADKDKALLAKKQDEELALAKPIDFDVSSRIEGAETQIVM
VDLEPGQILRAETGSLLYMTDGVELETSLGGGLSAGLKRYMTGESMFISD
FKYHGEEGTAGTVALGTEFPSKVIRVTLADYGGALICQKGAFLCGTHLTG
MEMEFTKSFKTGFFGGEGFVLQRLTGQGDAFIKAGGALIRRELAEGETLR
VTSGALVAFAPSVSYDVQMMKGVKNVMFGGEGLFMTSLTGPGTVFLQSMP
FDPFADSGVREVLNDIWSTVWGDR*

mRNA from alignment at scaffold_17:68694..70288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6775 ID=mRNA_6775|Name=jgi.p|Nanoce1779_2|112329|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at scaffold_17:68694..70288+ (Nannochloropsis oceanica)
AAACCCTTTTCATCTGACTGATATATGCTGCCAGACGTTCCACAACTCAC
GACAAGTACCTGCATCACAATCTCTTGCCCGTCTCGCCAGGCGTCAGCAC
TCAGTGGAGAGGATTACACCAAAGTTTCATCCCGTCCTTTACTCCAATAC
TAGACAGACTAGCAGGAACACTTGGAAACCCGTGCGTCGTCAACATGCTG
GTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTTAACACG
TAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCCCAAAAC
CAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATCGCACGT
CGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGCTCTGCT
GGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCGATTTTG
ACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATGGTCGAC
CTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTTGTACAT
GACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGTCGGCAG
GACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGACTTCAAA
TACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTACGGAATT
CCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCGCGCTCA
TTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGGATGGAG
ATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGAAGGTTT
TGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGGCCGGAG
GCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGGGTTACC
TCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGTCCAAAT
GATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGTTTATGA
CTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCTTTTGAC
CGTGTGGTCGCTTCCATCGCTTCCAGGGTTCCGCGCGGAGGAGGACTGGG
GATGGGCGTTCCGATTGGTATGGGGGCTGGGGGAGCAGGCGCTGGCGACG
AAGGGGGAGAGGATGGTGAGGGAGGGGAGGAAGGGGATGATAGTGGGATG
GGCTCCACATCGTCCTCGTCTTCTGCGGCAGCGGGAGAGGGATTTGGGGG
GACTAACACGGGGGGGAGTAGTAGTAGTAGTGGCAGTGAGGCACCAGGCG
AGCAAGGTGGGGAAGAAGTGTGGGGAGAAGAGAAGGGGGAGGAGGCGGGC
GAGATGCCGGAGGAAGTAGGGGAGGAAGCGCAGGAAGCGTTTGCGGATTC
GGGCGTTCGTGAGGTCCTTAATGATATTTGGAGCACTGTCTGGGGGGACA
GATAAGAGAAAGAAAACAAGTATGTGCAGGCGTGCATATGGGATGGAAGC
CTACCAATTCAACAACCAGAAAGAAAAATATAATGTGTCAAACAA

Coding sequence (CDS) from alignment at scaffold_17:68694..70288+

>mRNA_6775 ID=mRNA_6775|Name=jgi.p|Nanoce1779_2|112329|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_17:68694..70288+ (Nannochloropsis oceanica)
ATGCTGGTCCCCGCGATGCGCCACAGTGGTGGCCGCGGCATAATCTCTTT
AACACGTAGTCGCCTCTCCGCTCAACGAATTCTTACGCAACTGGTGACCC
CAAAACCAGCTTCCAGAGCGCCGGAGGCTTTCCTAGGGGGCGTCGTCATC
GCACGTCGGAGCATCTTCAATGGCCTGAGCGGGGCAGACAAGGATAAGGC
TCTGCTGGCAAAGAAGCAAGATGAGGAGTTAGCGTTGGCCAAACCAATCG
ATTTTGACGTGTCCTCTCGGATCGAAGGCGCCGAGACGCAGATAGTCATG
GTCGACCTCGAACCCGGGCAGATTTTGAGAGCAGAAACGGGCTCGTTGTT
GTACATGACAGACGGTGTAGAGTTGGAGACTTCTCTTGGCGGGGGGCTGT
CGGCAGGACTTAAACGATACATGACTGGTGAAAGCATGTTCATCTCCGAC
TTCAAATACCATGGGGAGGAGGGCACCGCGGGTACGGTGGCGCTAGGTAC
GGAATTCCCTAGTAAGGTGATCCGAGTCACACTGGCTGATTACGGCGGCG
CGCTCATTTGTCAAAAGGGTGCATTTTTGTGTGGGACACATTTGACTGGG
ATGGAGATGGAGTTCACAAAAAGCTTCAAGACTGGGTTCTTCGGTGGGGA
AGGTTTTGTGTTGCAGCGGCTGACAGGGCAAGGCGACGCGTTTATCAAGG
CCGGAGGCGCTCTGATTCGACGGGAGCTGGCCGAGGGAGAGACGTTGCGG
GTTACCTCCGGAGCGCTTGTAGCATTCGCTCCTAGCGTGAGTTACGACGT
CCAAATGATGAAGGGCGTGAAGAATGTGATGTTTGGGGGTGAGGGTTTGT
TTATGACTTCGCTTACGGGGCCGGGCACTGTTTTCTTGCAGAGCATGCCT
TTTGACCCGTTTGCGGATTCGGGCGTTCGTGAGGTCCTTAATGATATTTG
GAGCACTGTCTGGGGGGACAGATAAATGCTGGTCCCCGCGATGCGCCACA
GTGGTGGCCGCGGCATAATCTCTTTAACACGTAGTCGCCTCTCCGCTCAA
CGAATTCTTACGCAACTGGTGACCCCAAAACCAGCTTCCAGAGCGCCGGA
GGCTTTCCTAGGGGGCGTCGTCATCGCACGTCGGAGCATCTTCAATGGCC
TGAGCGGGGCAGACAAGGATAAGGCTCTGCTGGCAAAGAAGCAAGATGAG
GAGTTAGCGTTGGCCAAACCAATCGATTTTGACGTGTCCTCTCGGATCGA
AGGCGCCGAGACGCAGATAGTCATGGTCGACCTCGAACCCGGGCAGATTT
TGAGAGCAGAAACGGGCTCGTTGTTGTACATGACAGACGGTGTAGAGTTG
GAGACTTCTCTTGGCGGGGGGCTGTCGGCAGGACTTAAACGATACATGAC
TGGTGAAAGCATGTTCATCTCCGACTTCAAATACCATGGGGAGGAGGGCA
CCGCGGGTACGGTGGCGCTAGGTACGGAATTCCCTAGTAAGGTGATCCGA
GTCACACTGGCTGATTACGGCGGCGCGCTCATTTGTCAAAAGGGTGCATT
TTTGTGTGGGACACATTTGACTGGGATGGAGATGGAGTTCACAAAAAGCT
TCAAGACTGGGTTCTTCGGTGGGGAAGGTTTTGTGTTGCAGCGGCTGACA
GGGCAAGGCGACGCGTTTATCAAGGCCGGAGGCGCTCTGATTCGACGGGA
GCTGGCCGAGGGAGAGACGTTGCGGGTTACCTCCGGAGCGCTTGTAGCAT
TCGCTCCTAGCGTGAGTTACGACGTCCAAATGATGAAGGGCGTGAAGAAT
GTGATGTTTGGGGGTGAGGGTTTGTTTATGACTTCGCTTACGGGGCCGGG
CACTGTTTTCTTGCAGAGCATGCCTTTTGACCCGTTTGCGGATTCGGGCG
TTCGTGAGGTCCTTAATGATATTTGGAGCACTGTCTGGGGGGACAGATAA

Synonyms

Publications