jgi.p|Nanoce1779_2|576092, mRNA_66 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576092
Unique NamemRNA_66
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length302
Alignment locationscaffold_3:179878..180753 -

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Properties
Property NameValue
TranscriptId576178
TrackFilteredModels2
ProteinId576092
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:179878..180753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576092gene_66Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576092mRNA_66-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_66CDS_66Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_66 ID=mRNA_66|Name=jgi.p|Nanoce1779_2|576092|organism=Nannochloropsis oceanica|type=mRNA|length=302bp
ACAGGGATAGCCATGTCTGCCGCAGCCGCCACCACCTACTGGCGCATTGC
GGGCCTGACGTACTTGCAGTACACGAGCAAGGCGGCGGGTGTGCTGCGTG
CGGCACTCAAGGAGCCTCTCCGTACCAAGACGATGGCCAAGGAGAAGATC
TACTACAAGAAGCTGCCCTGGACCCCGAAGCTGATCGGCCAGCCCGTGGG
ACCGCTCAAGGTGGAGGTGACGTCGCTAAAGTAAGGAGAAGGAGTAACTG
CGGCGTGAAGACAAGGGAGGGAGGGGCTGTGTGTGTAGTAAGTAGTGAGG
AG
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protein sequence of jgi.p|Nanoce1779_2|576092

>mRNA_66-protein ID=mRNA_66-protein|Name=jgi.p|Nanoce1779_2|576092|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MSAAAATTYWRIAGLTYLQYTSKAAGVLRAALKEPLRTKTMAKEKIYYKK
LPWTPKLIGQPVGPLKVEVTSL
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mRNA from alignment at scaffold_3:179878..180753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_66 ID=mRNA_66|Name=jgi.p|Nanoce1779_2|576092|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at scaffold_3:179878..180753- (Nannochloropsis oceanica)
ACAGGGATAGCCATGTCTGCCGCAGCCGCCACCACCTACTGGCGCATTGC
GGGCCTGACGTACTTGCAGGTAAGTTGTGTCGGATTGCTGGGATTCCTTC
GTCTCTCGCCCTCCCTCCCTCCCTCCCTCCCTAATTCGTTCGTCTCCTCA
CAACTCCACTACGATGACTTATCTGCTCACACCACCTCTCCCACACCCAC
ACACTTCTTGACAAACAGTACACGAGCAAGGCGGCGGGTGTGCTGCGTGC
GGCACTCAAGGTACGTCCAGCAAGCGAGCGACAGTAGGCGGTGAAGGGAG
GGAGGGAGAGGGGCAGGGAGGAAGGGACTGCGATGAGCTAGAAGCGCATG
GCCGACAATGCCATGAGTCTGCTATTTTACGTGTCGCGATGGCAGGGAAG
AAGAATTGTCAAGCGTGTTAATGAGAGCGATGTTAACCTCGATGGTCACG
TGCCGAGCACAGCAAGAAATCTCACCACCTCCCTCCCTCCCTCCCTCCTT
CCCTTCCTCTCTCCCGTGTCCTTGTCCTCACAGGAGCCTCTCCGTACCAA
GACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGCCCTGGACCCCGA
AGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGGTAAGAGCGGGTGGGAG
CAAGGGAGGGAAGGAGGAAGGGACGAAAGGAGAGAAAGGTAAATAAAAGA
AAGGAAGGACATGTGAACATGCCAGTACTCACTCTTGGCTTTTTTTCCTG
TTTTTCCGCACATAATTTTACACGCGTACGAACAGTGGAGGTGACGTCGC
TAAAGTAAGGAGAAGGAGTAACTGCGGCGTGAAGACAAGGGAGGGAGGGG
CTGTGTGTGTAGTAAGTAGTGAGGAG
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Coding sequence (CDS) from alignment at scaffold_3:179878..180753-

>mRNA_66 ID=mRNA_66|Name=jgi.p|Nanoce1779_2|576092|organism=Nannochloropsis oceanica|type=CDS|length=868bp|location=Sequence derived from alignment at scaffold_3:179878..180753- (Nannochloropsis oceanica)
TGGAGGTGACGTCGCTAAGAGCCTCTCCGTACCAAGACGATGGCCAAGGA
GAAGATCTACTACAAGAAGCTGCCCTGGACCCCGAAGCTGATCGGCCAGC
CCGTGGGACCGCTCAAGGTACACGAGCAAGGCGGCGGGTGTGCTGCGTGC
GGCACTCAAGATGTCTGCCGCAGCCGCCACCACCTACTGGCGCATTGCGG
GCCTGACGTACTTGCAGTGGAGGTGACGTCGCTAAGAGCCTCTCCGTACC
AAGACGATGGCCAAGGAGAAGATCTACTACAAGAAGCTGCCCTGGACCCC
GAAGCTGATCGGCCAGCCCGTGGGACCGCTCAAGGTACACGAGCAAGGCG
GCGGGTGTGCTGCGTGCGGCACTCAAGATGTCTGCCGCAGCCGCCACCAC
CTACTGGCGCATTGCGGGCCTGACGTACTTGCAGTGGAGGTGACGTCGCT
AAGAGCCTCTCCGTACCAAGACGATGGCCAAGGAGAAGATCTACTACAAG
AAGCTGCCCTGGACCCCGAAGCTGATCGGCCAGCCCGTGGGACCGCTCAA
GGTACACGAGCAAGGCGGCGGGTGTGCTGCGTGCGGCACTCAAGATGTCT
GCCGCAGCCGCCACCACCTACTGGCGCATTGCGGGCCTGACGTACTTGCA
GTGGAGGTGACGTCGCTAAGAGCCTCTCCGTACCAAGACGATGGCCAAGG
AGAAGATCTACTACAAGAAGCTGCCCTGGACCCCGAAGCTGATCGGCCAG
CCCGTGGGACCGCTCAAGGTACACGAGCAAGGCGGCGGGTGTGCTGCGTG
CGGCACTCAAGATGTCTGCCGCAGCCGCCACCACCTACTGGCGCATTGCG
GGCCTGACGTACTTGCAG
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Synonyms
Publications