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Properties
Property Name | Value |
TranscriptId | 122324 |
Track | FilteredModels2 |
ProteinId | 122238 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_18 | supercontig | scaffold_18:188528..191577 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6578 ID=mRNA_6578|Name=jgi.p|Nanoce1779_2|122238|organism=Nannochloropsis oceanica|type=mRNA|length=3050bp GCAGGTGAAGAAACAGCAGCCAATCTTGCCGCAGAGGTCTTCAAGTCCGG AATCATTGTCTCCTCAGGAAGAGCAATCTCACTCCCGACCCATGTCGCAG CCACAATCCCTGCCGCTGTTATGCCTCCAGCACGAAGTTGAAGTGCAGCC ATTGCATCTTCAGGGGCCTCATCAGCTTTCCCCCGCACGATCGAGGACGC TCTCGCCGCTCCCTTCATTTTCCTCGCCTCCCCACTCTCCTTCAAGGAAG CCGGACAAGCAAACGGCACCCAGCATGGCCTTACCCATCGCGTCGACAGG AAGCCTCCCTTCTGCAGACGCCTCCTTGCCTTCCCGCCCACCCTCAAGGA CAAGCAGCACTCAAACGGCACCCGACTCGTCTGTGTCTGCTGTACAAACA GCAAGACCCTCTGCTATCCCTCCCCCCCTCGCCTTGCTTCCGCGTCCTCC CTCAAGGGCAACCAGTACGCAAACAGAAGCTGACACACCCTCGCCCGCTC TGCCCTCTGCACCGCTCTCTCCCTGTCTTCAATCGGCCTCGCCTGCAAGG CCTCTCTGGAACCTACCCACCGGCATGAGCCCGCCCTATCCCACCTCGGC CCTGCCTTCTTCTCCGCCGGTCCCTTGCTCTGCTCCTCCTGCCTCCCCCC TGCAATCATTGCTTCAAAATGGTATGACCGGTGACGGGAAAACACTTACA CTTGCCAGACAAGGCTTAAGAGACACCACTATCCTCACCCACCTCTATCG ACGACGACTCCTTCAACACGGCAGCAGTGGTAGCAGCAGCATAACCCTGG GTTCCATCCTCCTCTCTCTCGACCTGTCCTTCAATAATCTCGAAATCGTA AATGGATTGCGAAATTTCTGTGAATTGAAGCATTTGGACCTCTCACATAA CAATTTGACAGACATCCGTTGTCGTTACCCACCCCGGCTCGAAACCCTCA AATTAAGCCACAATAAAATCACATCCGTTGCAGGCCTGGACGGGATGGAG GCAGGCCTGCTCCGCGTGCTTGACCTGTCGCATAACCCCCTTTGGATGGT CGATGGCATTATGCACCTCAAGGGGTTGACAGAGCTAGATCTCTCGCACA CCCGTTTGAGGAAACCACTGGACGTTCGCCTCCTCTCCTTCAATGCTTCC TTGCAGTCTCTCTCTATCATAGGCACGCCTCTTGCCCAAAAGTGTGTAAA GAGCGGAAAGATCGTCATCATGTCCCTCCTCCCTGATCTCCGTCTCTTCA ACCACAATCCATCCTCCTCCCGTCGGGCCAAGTGCCAAGACCGGAACAAA AACGAGATAGCCCTCACCCGCCTCTCCACGTCCTCCACCAGCACCTCCCC CTCCGCCCGCACCCGCGCCGTTCAACAGCAAAAGGATTCTCAACGCAGCT ACCACTATCTCCAGCAATGCCGCGCTCGGGAAAAGGCGAAACTTCTCCAG GAACTTGCATTTGAAAATTCATTTAAACAGCCCCCACACGTCCCGGCAGA ATTGCAGCGAGTCCATGTCGCATATCTAAGTGTGCCGAAGACGAGTAATC CTTATGGGCATCTGCTTTGTCGACTTTTGCATGCTCGACGGGAGACGCAG CAGCGGGGTGGGAGGAAGAGGAGGAGAAGGAGGGAGAGAAAGCAGGAGGA GCAGGAGGGGGGGCAGAAAGAAGAGGATGGGCAGGAGGAGCAGGAGCAGG AGCAGGAAGAGGAAGAGGAGGAGAAGGAGGGAGACCGCACCTCAGAGTCT TCTTTTCTTTTGTCGGCGGAGCGTAGGCGATTACTCTTGCAGAAGGTGGT CCTGCGTGAGGTCGTGGCCCGACGATGGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCGGTTTAAGCATCGACGACCACAACAGGAG GGAGAGGATATAGATGGAGCCGCAGCAGATGAAGAAAGAGACTCAACACC ACATGTTGCTGCTGCTCCTGCTTTTACAGCTCCTGCTTCTACTCCTGCAG CCGGCGAACTACTGCCCTCCACCTCTCGTTTCATGCCTCAGGATAAGATC CCTCCTTCAGAGGTGGAGGCTTTCCTGGCAGCTATTGAGGAGGACTTGGT GACCACAATTGCGGCTTTGCATGTCGCTGTCCAAAGTGTAAATGGCATTG ACAGAAATGGAGACGAAGATGAAGAGGAGGAGGGCGCGAATGATGGGACA GGAGGGGGGAGGGGGGAGAAATACGGGGAGGGGGTATTAACGAGGGTAGG GAGACGATTGAAGGGTTATTATGGGCAGATGAAAGTCTTAGAGCCTTTTC GTGTTCCTTTTGATTTCAAGCTTGAGGCAAGGAAGAGGAGGGAGGGAGTG GGGGAGGGAGGGGCTGTAGGGAGGGTGGAAGAGGAGGTGTTGAAGAAGGT GGAGAAAGGAAATGAGATGAAGAGGGAGTTGAGGACCTTGCTGGATTTGA TGGTGAAGGGGGGGATTGTTGGGGCCTTGACGTTAGCGGAGATGTTACGG AACAAGTATAGGGTGGATGAGGAAGAGGAGGACGAGAATGAAGACGAGGA GGGGGAGGAGGCTTCGGAAAGCAGGTGGCCTTCGCTTGTGGACGAGGACG AGGAAGGCAAAGTGGATATGTCTGAATACAAATCTCCTGTGACGGCTCCG AAACGGCAGGGAAAGATTAAGAAGAGGGGGGAAAGATTCGCCTCGGAAGC TTTGTGGGGAAGAGAAGAGGTGGGGAGGACGGGGAGGCAATGGGAAGGAG GAGATGGCGAGGAAGAGGAAGAGGGGGACGAGGAGTACGAGGAGGGCGAG GACGAGGAGGAATTGTCTCGGTTGCTTGAAGAAGAAGGGGAGGAGGAGCA AGAGGAGGAGGAGGAGGAGGAAGTCGTGTGGACAGAGAGTTTTGATAGGC ACTACCAGGCATTTTTCTACTTCAATGAACGGACAGGAAAGAGTCAGTGG CACAAGCCCAAGGCGCCTTATGTCGCTTATGATGAAGAGGAGGGTGATGA CGTGTGAAAGAGGGTGGAAATGAGGAAGGTGGGGGGGGAGAAGGAGGAGA back to topprotein sequence of jgi.p|Nanoce1779_2|122238 >mRNA_6578-protein ID=mRNA_6578-protein|Name=jgi.p|Nanoce1779_2|122238|organism=Nannochloropsis oceanica|type=polypeptide|length=972bp MSQPQSLPLLCLQHEVEVQPLHLQGPHQLSPARSRTLSPLPSFSSPPHSP SRKPDKQTAPSMALPIASTGSLPSADASLPSRPPSRTSSTQTAPDSSVSA VQTARPSAIPPPLALLPRPPSRATSTQTEADTPSPALPSAPLSPCLQSAS PARPLWNLPTGMSPPYPTSALPSSPPVPCSAPPASPLQSLLQNGMTGDGK TLTLARQGLRDTTILTHLYRRRLLQHGSSGSSSITLGSILLSLDLSFNNL EIVNGLRNFCELKHLDLSHNNLTDIRCRYPPRLETLKLSHNKITSVAGLD GMEAGLLRVLDLSHNPLWMVDGIMHLKGLTELDLSHTRLRKPLDVRLLSF NASLQSLSIIGTPLAQKCVKSGKIVIMSLLPDLRLFNHNPSSSRRAKCQD RNKNEIALTRLSTSSTSTSPSARTRAVQQQKDSQRSYHYLQQCRAREKAK LLQELAFENSFKQPPHVPAELQRVHVAYLSVPKTSNPYGHLLCRLLHARR ETQQRGGRKRRRRRERKQEEQEGGQKEEDGQEEQEQEQEEEEEEKEGDRT SESSFLLSAERRRLLLQKVVLREVVARRWQQQQQQQQQQQQQQRFKHRRP QQEGEDIDGAAADEERDSTPHVAAAPAFTAPASTPAAGELLPSTSRFMPQ DKIPPSEVEAFLAAIEEDLVTTIAALHVAVQSVNGIDRNGDEDEEEEGAN DGTGGGRGEKYGEGVLTRVGRRLKGYYGQMKVLEPFRVPFDFKLEARKRR EGVGEGGAVGRVEEEVLKKVEKGNEMKRELRTLLDLMVKGGIVGALTLAE MLRNKYRVDEEEEDENEDEEGEEASESRWPSLVDEDEEGKVDMSEYKSPV TAPKRQGKIKKRGERFASEALWGREEVGRTGRQWEGGDGEEEEEGDEEYE EGEDEEELSRLLEEEGEEEQEEEEEEEVVWTESFDRHYQAFFYFNERTGK SQWHKPKAPYVAYDEEEGDDV* back to topmRNA from alignment at scaffold_18:188528..191577+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6578 ID=mRNA_6578|Name=jgi.p|Nanoce1779_2|122238|organism=Nannochloropsis oceanica|type=mRNA|length=3050bp|location=Sequence derived from alignment at scaffold_18:188528..191577+ (Nannochloropsis oceanica) GCAGGTGAAGAAACAGCAGCCAATCTTGCCGCAGAGGTCTTCAAGTCCGG
AATCATTGTCTCCTCAGGAAGAGCAATCTCACTCCCGACCCATGTCGCAG
CCACAATCCCTGCCGCTGTTATGCCTCCAGCACGAAGTTGAAGTGCAGCC
ATTGCATCTTCAGGGGCCTCATCAGCTTTCCCCCGCACGATCGAGGACGC
TCTCGCCGCTCCCTTCATTTTCCTCGCCTCCCCACTCTCCTTCAAGGAAG
CCGGACAAGCAAACGGCACCCAGCATGGCCTTACCCATCGCGTCGACAGG
AAGCCTCCCTTCTGCAGACGCCTCCTTGCCTTCCCGCCCACCCTCAAGGA
CAAGCAGCACTCAAACGGCACCCGACTCGTCTGTGTCTGCTGTACAAACA
GCAAGACCCTCTGCTATCCCTCCCCCCCTCGCCTTGCTTCCGCGTCCTCC
CTCAAGGGCAACCAGTACGCAAACAGAAGCTGACACACCCTCGCCCGCTC
TGCCCTCTGCACCGCTCTCTCCCTGTCTTCAATCGGCCTCGCCTGCAAGG
CCTCTCTGGAACCTACCCACCGGCATGAGCCCGCCCTATCCCACCTCGGC
CCTGCCTTCTTCTCCGCCGGTCCCTTGCTCTGCTCCTCCTGCCTCCCCCC
TGCAATCATTGCTTCAAAATGGTATGACCGGTGACGGGAAAACACTTACA
CTTGCCAGACAAGGCTTAAGAGACACCACTATCCTCACCCACCTCTATCG
ACGACGACTCCTTCAACACGGCAGCAGTGGTAGCAGCAGCATAACCCTGG
GTTCCATCCTCCTCTCTCTCGACCTGTCCTTCAATAATCTCGAAATCGTA
AATGGATTGCGAAATTTCTGTGAATTGAAGCATTTGGACCTCTCACATAA
CAATTTGACAGACATCCGTTGTCGTTACCCACCCCGGCTCGAAACCCTCA
AATTAAGCCACAATAAAATCACATCCGTTGCAGGCCTGGACGGGATGGAG
GCAGGCCTGCTCCGCGTGCTTGACCTGTCGCATAACCCCCTTTGGATGGT
CGATGGCATTATGCACCTCAAGGGGTTGACAGAGCTAGATCTCTCGCACA
CCCGTTTGAGGAAACCACTGGACGTTCGCCTCCTCTCCTTCAATGCTTCC
TTGCAGTCTCTCTCTATCATAGGCACGCCTCTTGCCCAAAAGTGTGTAAA
GAGCGGAAAGATCGTCATCATGTCCCTCCTCCCTGATCTCCGTCTCTTCA
ACCACAATCCATCCTCCTCCCGTCGGGCCAAGTGCCAAGACCGGAACAAA
AACGAGATAGCCCTCACCCGCCTCTCCACGTCCTCCACCAGCACCTCCCC
CTCCGCCCGCACCCGCGCCGTTCAACAGCAAAAGGATTCTCAACGCAGCT
ACCACTATCTCCAGCAATGCCGCGCTCGGGAAAAGGCGAAACTTCTCCAG
GAACTTGCATTTGAAAATTCATTTAAACAGCCCCCACACGTCCCGGCAGA
ATTGCAGCGAGTCCATGTCGCATATCTAAGTGTGCCGAAGACGAGTAATC
CTTATGGGCATCTGCTTTGTCGACTTTTGCATGCTCGACGGGAGACGCAG
CAGCGGGGTGGGAGGAAGAGGAGGAGAAGGAGGGAGAGAAAGCAGGAGGA
GCAGGAGGGGGGGCAGAAAGAAGAGGATGGGCAGGAGGAGCAGGAGCAGG
AGCAGGAAGAGGAAGAGGAGGAGAAGGAGGGAGACCGCACCTCAGAGTCT
TCTTTTCTTTTGTCGGCGGAGCGTAGGCGATTACTCTTGCAGAAGGTGGT
CCTGCGTGAGGTCGTGGCCCGACGATGGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCGGTTTAAGCATCGACGACCACAACAGGAG
GGAGAGGATATAGATGGAGCCGCAGCAGATGAAGAAAGAGACTCAACACC
ACATGTTGCTGCTGCTCCTGCTTTTACAGCTCCTGCTTCTACTCCTGCAG
CCGGCGAACTACTGCCCTCCACCTCTCGTTTCATGCCTCAGGATAAGATC
CCTCCTTCAGAGGTGGAGGCTTTCCTGGCAGCTATTGAGGAGGACTTGGT
GACCACAATTGCGGCTTTGCATGTCGCTGTCCAAAGTGTAAATGGCATTG
ACAGAAATGGAGACGAAGATGAAGAGGAGGAGGGCGCGAATGATGGGACA
GGAGGGGGGAGGGGGGAGAAATACGGGGAGGGGGTATTAACGAGGGTAGG
GAGACGATTGAAGGGTTATTATGGGCAGATGAAAGTCTTAGAGCCTTTTC
GTGTTCCTTTTGATTTCAAGCTTGAGGCAAGGAAGAGGAGGGAGGGAGTG
GGGGAGGGAGGGGCTGTAGGGAGGGTGGAAGAGGAGGTGTTGAAGAAGGT
GGAGAAAGGAAATGAGATGAAGAGGGAGTTGAGGACCTTGCTGGATTTGA
TGGTGAAGGGGGGGATTGTTGGGGCCTTGACGTTAGCGGAGATGTTACGG
AACAAGTATAGGGTGGATGAGGAAGAGGAGGACGAGAATGAAGACGAGGA
GGGGGAGGAGGCTTCGGAAAGCAGGTGGCCTTCGCTTGTGGACGAGGACG
AGGAAGGCAAAGTGGATATGTCTGAATACAAATCTCCTGTGACGGCTCCG
AAACGGCAGGGAAAGATTAAGAAGAGGGGGGAAAGATTCGCCTCGGAAGC
TTTGTGGGGAAGAGAAGAGGTGGGGAGGACGGGGAGGCAATGGGAAGGAG
GAGATGGCGAGGAAGAGGAAGAGGGGGACGAGGAGTACGAGGAGGGCGAG
GACGAGGAGGAATTGTCTCGGTTGCTTGAAGAAGAAGGGGAGGAGGAGCA
AGAGGAGGAGGAGGAGGAGGAAGTCGTGTGGACAGAGAGTTTTGATAGGC
ACTACCAGGCATTTTTCTACTTCAATGAACGGACAGGAAAGAGTCAGTGG
CACAAGCCCAAGGCGCCTTATGTCGCTTATGATGAAGAGGAGGGTGATGA
CGTGTGAAAGAGGGTGGAAATGAGGAAGGTGGGGGGGGAGAAGGAGGAGA
back to topCoding sequence (CDS) from alignment at scaffold_18:188528..191577+ >mRNA_6578 ID=mRNA_6578|Name=jgi.p|Nanoce1779_2|122238|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_18:188528..191577+ (Nannochloropsis oceanica) ATGTCGCAGCCACAATCCCTGCCGCTGTTATGCCTCCAGCACGAAGTTGA AGTGCAGCCATTGCATCTTCAGGGGCCTCATCAGCTTTCCCCCGCACGAT CGAGGACGCTCTCGCCGCTCCCTTCATTTTCCTCGCCTCCCCACTCTCCT TCAAGGAAGCCGGACAAGCAAACGGCACCCAGCATGGCCTTACCCATCGC GTCGACAGGAAGCCTCCCTTCTGCAGACGCCTCCTTGCCTTCCCGCCCAC CCTCAAGGACAAGCAGCACTCAAACGGCACCCGACTCGTCTGTGTCTGCT GTACAAACAGCAAGACCCTCTGCTATCCCTCCCCCCCTCGCCTTGCTTCC GCGTCCTCCCTCAAGGGCAACCAGTACGCAAACAGAAGCTGACACACCCT CGCCCGCTCTGCCCTCTGCACCGCTCTCTCCCTGTCTTCAATCGGCCTCG CCTGCAAGGCCTCTCTGGAACCTACCCACCGGCATGAGCCCGCCCTATCC CACCTCGGCCCTGCCTTCTTCTCCGCCGGTCCCTTGCTCTGCTCCTCCTG CCTCCCCCCTGCAATCATTGCTTCAAAATGGTATGACCGGTGACGGGAAA ACACTTACACTTGCCAGACAAGGCTTAAGAGACACCACTATCCTCACCCA CCTCTATCGACGACGACTCCTTCAACACGGCAGCAGTGGTAGCAGCAGCA TAACCCTGGGTTCCATCCTCCTCTCTCTCGACCTGTCCTTCAATAATCTC GAAATCGTAAATGGATTGCGAAATTTCTGTGAATTGAAGCATTTGGACCT CTCACATAACAATTTGACAGACATCCGTTGTCGTTACCCACCCCGGCTCG AAACCCTCAAATTAAGCCACAATAAAATCACATCCGTTGCAGGCCTGGAC GGGATGGAGGCAGGCCTGCTCCGCGTGCTTGACCTGTCGCATAACCCCCT TTGGATGGTCGATGGCATTATGCACCTCAAGGGGTTGACAGAGCTAGATC TCTCGCACACCCGTTTGAGGAAACCACTGGACGTTCGCCTCCTCTCCTTC AATGCTTCCTTGCAGTCTCTCTCTATCATAGGCACGCCTCTTGCCCAAAA GTGTGTAAAGAGCGGAAAGATCGTCATCATGTCCCTCCTCCCTGATCTCC GTCTCTTCAACCACAATCCATCCTCCTCCCGTCGGGCCAAGTGCCAAGAC CGGAACAAAAACGAGATAGCCCTCACCCGCCTCTCCACGTCCTCCACCAG CACCTCCCCCTCCGCCCGCACCCGCGCCGTTCAACAGCAAAAGGATTCTC AACGCAGCTACCACTATCTCCAGCAATGCCGCGCTCGGGAAAAGGCGAAA CTTCTCCAGGAACTTGCATTTGAAAATTCATTTAAACAGCCCCCACACGT CCCGGCAGAATTGCAGCGAGTCCATGTCGCATATCTAAGTGTGCCGAAGA CGAGTAATCCTTATGGGCATCTGCTTTGTCGACTTTTGCATGCTCGACGG GAGACGCAGCAGCGGGGTGGGAGGAAGAGGAGGAGAAGGAGGGAGAGAAA GCAGGAGGAGCAGGAGGGGGGGCAGAAAGAAGAGGATGGGCAGGAGGAGC AGGAGCAGGAGCAGGAAGAGGAAGAGGAGGAGAAGGAGGGAGACCGCACC TCAGAGTCTTCTTTTCTTTTGTCGGCGGAGCGTAGGCGATTACTCTTGCA GAAGGTGGTCCTGCGTGAGGTCGTGGCCCGACGATGGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTTTAAGCATCGACGACCA CAACAGGAGGGAGAGGATATAGATGGAGCCGCAGCAGATGAAGAAAGAGA CTCAACACCACATGTTGCTGCTGCTCCTGCTTTTACAGCTCCTGCTTCTA CTCCTGCAGCCGGCGAACTACTGCCCTCCACCTCTCGTTTCATGCCTCAG GATAAGATCCCTCCTTCAGAGGTGGAGGCTTTCCTGGCAGCTATTGAGGA GGACTTGGTGACCACAATTGCGGCTTTGCATGTCGCTGTCCAAAGTGTAA ATGGCATTGACAGAAATGGAGACGAAGATGAAGAGGAGGAGGGCGCGAAT GATGGGACAGGAGGGGGGAGGGGGGAGAAATACGGGGAGGGGGTATTAAC GAGGGTAGGGAGACGATTGAAGGGTTATTATGGGCAGATGAAAGTCTTAG AGCCTTTTCGTGTTCCTTTTGATTTCAAGCTTGAGGCAAGGAAGAGGAGG GAGGGAGTGGGGGAGGGAGGGGCTGTAGGGAGGGTGGAAGAGGAGGTGTT GAAGAAGGTGGAGAAAGGAAATGAGATGAAGAGGGAGTTGAGGACCTTGC TGGATTTGATGGTGAAGGGGGGGATTGTTGGGGCCTTGACGTTAGCGGAG ATGTTACGGAACAAGTATAGGGTGGATGAGGAAGAGGAGGACGAGAATGA AGACGAGGAGGGGGAGGAGGCTTCGGAAAGCAGGTGGCCTTCGCTTGTGG ACGAGGACGAGGAAGGCAAAGTGGATATGTCTGAATACAAATCTCCTGTG ACGGCTCCGAAACGGCAGGGAAAGATTAAGAAGAGGGGGGAAAGATTCGC CTCGGAAGCTTTGTGGGGAAGAGAAGAGGTGGGGAGGACGGGGAGGCAAT GGGAAGGAGGAGATGGCGAGGAAGAGGAAGAGGGGGACGAGGAGTACGAG GAGGGCGAGGACGAGGAGGAATTGTCTCGGTTGCTTGAAGAAGAAGGGGA GGAGGAGCAAGAGGAGGAGGAGGAGGAGGAAGTCGTGTGGACAGAGAGTT TTGATAGGCACTACCAGGCATTTTTCTACTTCAATGAACGGACAGGAAAG AGTCAGTGGCACAAGCCCAAGGCGCCTTATGTCGCTTATGATGAAGAGGA GGGTGATGACGTGTGA back to top
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