jgi.p|Nanoce1779_2|597379, mRNA_6573 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597379
Unique Name	mRNA_6573
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2316
Alignment location	scaffold_18:178876..181191 +

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Properties


Property Name	Value
TranscriptId	597465
Track	FilteredModels2
ProteinId	597379

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:178876..181191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597379	gene_6573	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597379	mRNA_6573-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6573	CDS_6573	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:178876..181191+
coding sequence from alignment at scaffold_18:178876..181191+

mRNA sequence

>mRNA_6573 ID=mRNA_6573|Name=jgi.p|Nanoce1779_2|597379|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp
CAGAAAGAATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAA
TCCATGGCAAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAG
CACCCGGGTCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGT
CTCCCATCCGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCG
TCCTCCTCCTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCAC
TGAGAGTCCCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGC
GAATCAGTAACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCG
GCCCATCCCTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTA
CGCTAGTCAGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGA
TAAGGCACGCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGC
GCGTTGGATGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGA
GGGCGCCAAGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGAT
CGGGGGCTTTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCG
GTGCTGATCCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAG
TTTGGGAGCGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGG
CCATTGACATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGC
AGTAGGGGCATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTG
CGGCAACATATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCC
GTCGGTACTGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGT
TTTCCCGGGGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCC
CGTTTTGACCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGA
GGGTCGGATGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTG
GAGGAGGGAGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAG
GCAGGGCCTGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGG
CTCAATCTGTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTC
GAGACGTTTCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTT
CGTCCAGGAAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGG
GCGGACCTATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTG
TACATGTTGTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGA
TGTGGCTTTTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGC
CGGGTCAGTGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCG
CCGCAGCCGATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGG
GCGACATGCGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGG
TGGTGTGAATATGGAACGATACGTGGTCTTTGATCGCCGGTGTCGTGTAT
ATATTCGCGTGTGTTCAGATCATGGTTTGCTATTCCCTATTCTACCCAGC
GAAGTTGTGTTGATATGCTCAAGTCCTTTGTCCCTTCTGAAGAGAAGTAG
GTAGAACGAGAGACAGAAAGGAGAGAGGGGGCCTAGAGGAAGTCTACCTG
TCACTGTGTTGCCCTTTCCCATCTTTTCTTTCATTTTAATAGAAGAAGGC
TCGTCGGCGAGGTCTAACAAAATATGTGAAACGTGTAAAAAAGGAAAAAC
AAAAAGTGTAGAATAATGACTCAATCAGACGATATGACAGTGTTGTGTGA
TTTGTGGCACTGCCTTTCCCAAGGAGACAAGTACAAAGAAAGAGACTGTT
AGAGCAGCATCTTCATGTGTTCGAACCGTCGTCCTGTCGATACTACAATT
CAATAGAAAATTGATTTTCATATGAGTGGAGACATATACAGCACTTGTGA
TTTTCCAGAGCACTGGTGATCATTCAGGAAACAATACCAAGAAAAGGTTC
GTGTGAATACTCGCCTCGACTTGTTAATGCTTTCTGATGTCGAAGGTTAG
ATGAGAGTAAAAGTGTAGATGGTCGAATCGAGAAGAGTGAAAAGAAAGAA
TGCAGAAGGAGGTGAT

protein sequence of jgi.p|Nanoce1779_2|597379

>mRNA_6573-protein ID=mRNA_6573-protein|Name=jgi.p|Nanoce1779_2|597379|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MPPLGDVKACQASESMARTVAPRITPSSKTSTRVFAEAKSAEEPFPLSPI
RGHARSLGGFPPSSSSSSSSPFPTTSIPTTTESPLLPWRLKSSRQAARIS
NPVRNIVDHLKPNPAHPLPCLNFALGDPTAYASQGHLLCPDALVDTVIRH
AREGLHNGYTCSAGALDARQALARAFSYEGEGAKRLTADDVIIASGGSGA
LEIAMAALLNEGDAVLIPRPGFALYRVIAQSLGAVTLPYDLLPEKNWAID
MVALEATIVEYNSSSRGIIKAILINNPSNPCGNIFSLPNLLALLDVARRY
CLPIISDEIYGQVCFPGEAFHPLGTLTRDVPVLTIGGLAKQYAVPGWRVG
WVLIQDPLGLLEVVEEGGKEEGNEGGGVSVRQGLKNLTQLILGANTLAQS
VIPTLFPSTPSHSLETFHANYVHLLAENARFVQEMLLPVVRKERGREGGP
IVGVSLPNRPQGTLYMLLKVDARAFGDLDDDVAFCAALLQEENLVLLPGQ
CFGVPGYVRLVLTPPQPMLAEGLRRLRDFCGRHACAEGIPGGEGEGAVV*

mRNA from alignment at scaffold_18:178876..181191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6573 ID=mRNA_6573|Name=jgi.p|Nanoce1779_2|597379|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp|location=Sequence derived from alignment at scaffold_18:178876..181191+ (Nannochloropsis oceanica)
CAGAAAGAATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAA
TCCATGGCAAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAG
CACCCGGGTCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGT
CTCCCATCCGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCG
TCCTCCTCCTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCAC
TGAGAGTCCCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGC
GAATCAGTAACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCG
GCCCATCCCTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTA
CGCTAGTCAGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGA
TAAGGCACGCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGC
GCGTTGGATGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGA
GGGCGCCAAGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGAT
CGGGGGCTTTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCG
GTGCTGATCCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAG
TTTGGGAGCGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGG
CCATTGACATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGC
AGTAGGGGCATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTG
CGGCAACATATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCC
GTCGGTACTGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGT
TTTCCCGGGGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCC
CGTTTTGACCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGA
GGGTCGGATGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTG
GAGGAGGGAGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAG
GCAGGGCCTGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGG
CTCAATCTGTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTC
GAGACGTTTCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTT
CGTCCAGGAAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGG
GCGGACCTATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTG
TACATGTTGTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGA
TGTGGCTTTTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGC
CGGGTCAGTGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCG
CCGCAGCCGATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGG
GCGACATGCGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGG
TGGTGTGAATATGGAACGATACGTGGTCTTTGATCGCCGGTGTCGTGTAT
ATATTCGCGTGTGTTCAGATCATGGTTTGCTATTCCCTATTCTACCCAGC
GAAGTTGTGTTGATATGCTCAAGTCCTTTGTCCCTTCTGAAGAGAAGTAG
GTAGAACGAGAGACAGAAAGGAGAGAGGGGGCCTAGAGGAAGTCTACCTG
TCACTGTGTTGCCCTTTCCCATCTTTTCTTTCATTTTAATAGAAGAAGGC
TCGTCGGCGAGGTCTAACAAAATATGTGAAACGTGTAAAAAAGGAAAAAC
AAAAAGTGTAGAATAATGACTCAATCAGACGATATGACAGTGTTGTGTGA
TTTGTGGCACTGCCTTTCCCAAGGAGACAAGTACAAAGAAAGAGACTGTT
AGAGCAGCATCTTCATGTGTTCGAACCGTCGTCCTGTCGATACTACAATT
CAATAGAAAATTGATTTTCATATGAGTGGAGACATATACAGCACTTGTGA
TTTTCCAGAGCACTGGTGATCATTCAGGAAACAATACCAAGAAAAGGTTC
GTGTGAATACTCGCCTCGACTTGTTAATGCTTTCTGATGTCGAAGGTTAG
ATGAGAGTAAAAGTGTAGATGGTCGAATCGAGAAGAGTGAAAAGAAAGAA
TGCAGAAGGAGGTGAT

Coding sequence (CDS) from alignment at scaffold_18:178876..181191+

>mRNA_6573 ID=mRNA_6573|Name=jgi.p|Nanoce1779_2|597379|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_18:178876..181191+ (Nannochloropsis oceanica)
ATGCCGCCCCTCGGGGATGTCAAGGCCTGCCAAGCATCGGAATCCATGGC
AAGGACCGTCGCACCCCGCATCACGCCAAGCTCTAAGACAAGCACCCGGG
TCTTTGCCGAAGCCAAGAGCGCCGAGGAGCCTTTTCCCCTGTCTCCCATC
CGTGGCCATGCCCGAAGCCTAGGCGGATTCCCGCCCTCCTCGTCCTCCTC
CTCCTCGTCCCCATTCCCCACCACCAGCATCCCCACCACCACTGAGAGTC
CCCTATTACCCTGGCGCTTGAAATCTTCACGACAGGCCGCGCGAATCAGT
AACCCCGTCCGCAACATCGTGGACCATCTGAAGCCCAACCCGGCCCATCC
CTTACCGTGCCTTAATTTTGCCTTGGGAGACCCCACTGCCTACGCTAGTC
AGGGGCACTTGCTTTGCCCTGACGCCTTGGTAGATACTGTGATAAGGCAC
GCACGAGAAGGGCTTCATAACGGGTACACATGCTCGGCGGGCGCGTTGGA
TGCCCGCCAAGCGCTGGCCAGGGCCTTTTCATACGAGGGCGAGGGCGCCA
AGCGGTTGACAGCGGACGACGTGATAATTGCGAGTGGGGGATCGGGGGCT
TTGGAGATTGCGATGGCTGCACTGTTGAATGAAGGGGATGCGGTGCTGAT
CCCTCGGCCGGGTTTTGCTCTGTATCGAGTGATTGCACAGAGTTTGGGAG
CGGTGACGTTGCCCTATGATTTGCTGCCGGAGAAGAATTGGGCCATTGAC
ATGGTGGCGCTCGAGGCCACTATTGTGGAGTATAACAGCAGCAGTAGGGG
CATAATCAAAGCGATTTTGATCAACAACCCATCCAACCCCTGCGGCAACA
TATTTTCCTTGCCGAACCTCCTTGCCCTCCTCGATGTAGCCCGTCGGTAC
TGCCTTCCCATCATCTCCGACGAGATTTACGGGCAAGTGTGTTTTCCCGG
GGAGGCATTTCATCCTCTAGGAACACTTACGCGGGATGTCCCCGTTTTGA
CCATAGGGGGGCTGGCGAAGCAGTATGCGGTTCCCGGATGGAGGGTCGGA
TGGGTGCTGATACAAGACCCGTTGGGTTTGCTGGAAGTGGTGGAGGAGGG
AGGGAAGGAAGAAGGCAATGAGGGAGGGGGGGTCAGTGTAAGGCAGGGCC
TGAAGAACCTGACACAGCTGATTTTGGGAGCCAATACACTGGCTCAATCT
GTCATCCCTACTCTGTTTCCCTCCACCCCCTCCCATTCCCTCGAGACGTT
TCATGCCAATTACGTGCACCTCTTGGCAGAAAATGCCCGCTTCGTCCAGG
AAATGTTGTTGCCTGTGGTTAGAAAAGAGAGAGGGAGGGAGGGCGGACCT
ATTGTCGGGGTATCTTTGCCCAACCGCCCCCAAGGGACCCTGTACATGTT
GTTGAAAGTGGATGCGAGAGCCTTTGGAGACTTGGATGACGATGTGGCTT
TTTGCGCGGCCTTGCTGCAGGAGGAGAATCTTGTTTTGTTGCCGGGTCAG
TGCTTTGGAGTGCCGGGATATGTGAGGTTGGTCTTGACGCCGCCGCAGCC
GATGCTGGCGGAGGGATTGCGCCGGCTGCGTGACTTTTGTGGGCGACATG
CGTGTGCTGAAGGAATTCCGGGAGGGGAAGGGGAGGGTGCGGTGGTGTGA

Synonyms

Publications