jgi.p|Nanoce1779_2|562539, mRNA_653 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|562539
Unique Name	mRNA_653
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2721
Alignment location	scaffold_2:103109..105829 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	562625
Track	FilteredModels2
ProteinId	562539

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:103109..105829 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562539	gene_653	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_653	CDS_653	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|562539	mRNA_653-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:103109..105829-
coding sequence from alignment at scaffold_2:103109..105829-

mRNA sequence

>mRNA_653 ID=mRNA_653|Name=jgi.p|Nanoce1779_2|562539|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp
ATGCTGGACGCTGAAGACGCGCGGGCACGAGCGATTCTCTTGGCGCTGGT
CGAGCCGGCGGACCAAAATCTCGCCATGCTCGCCATGGACGATGCCGCCG
TCAAGGCCCAAAAAGCTGCGGACACCTCGCCAAAAACTGCTGAAGCCCGT
ATGGATGCCTACAATGCTATATCAACCAGCTCTCATGCGCCCACGTTGCT
TTTCTCGTCTTCACCTTCGTCTCCTTTGGCCATATATTGCAACGCCTTCC
TCTGTAGCCTTGCCCGGGCCCATACCACGCCCCTTCTCGATAAGGCTTTT
GCTTACTTGGGTAAGATGCGCGCCATTTCTCCAGAAGAGCTAGGCGATGG
TGTCATTCCGTCAGCTCTGGCCCGCAACAATCTAATTCGAACATGCGCCA
TTGTAATTCGTGGCGTAGGCCTGGATGGGATCGACGGAGGAGGCCGGCAG
AGGCAGCAGCAGTGGCACCCCTCCGCGTCTCACCCGCCCTCCGATATAAC
ACATTCACGAGCGGATAGCAAGAAATACGTTGGCCTAGGAGAGATGCTCT
TTGAAGAATACCTCCAATCCGCCCACGAAGCCATCCGTCGACAGCCCACC
AATCACGCCCTCCTACAGACTTACCAGACTGACACCCCCCCACTCCTCTC
ATCCACCATCTACCTCTACTTCCAAGCCCGGGAATTCTCCAAGACCATCA
CCATCTTCCAGCGCATGCGCGAGCAATTCTTCCCCTGTCCGATTATCCCA
GACGCATGGGCAACCTCTGGTGTGATCCGTGCTCACGCCCACAATCGGAG
CCCTCTTGAGGCATGGTCGCTGCTGCAAGACCTCACCCAAGGTCCACTTC
CTGTGGAAGTCATCCTCCTTCCCGGCCTGTACAAATCGCTCGCGCATGGT
ATTCAGCGTCAGCTTGCACAGAGCCGCCATCCCATGCCACAGGCGCTAGA
ATTGAGGAGGTTGGCACACCGTCTTTTGCGTCATATGAGACATGTTGCGA
AATTGCGGCCACCGTTGACGTTGTGGAGGGTATTCATGAAGATAGAAGCG
AGGTTTGGGGATTGGAGGAGGGTACAGCGGTACATGGCGGTGATGAAAGA
ATATGGGTGGGTGAGTGGAAGCCATGAGTATGCCATTTTGATTGAAGCCC
TGGGAGAAGGGAAGGCTCTCAAGGTGTTGGCCCACACTCAGGAGAAGATG
AGACGGGAGGGGGTACCCTTCACGTACGTGGTGTATTTGTCTATTATCCA
GGCACATAGGAAGAGTTATGATTTGAGAGGAGCCCAGGCGGCGTTTGAGG
CGTTTATTGAGGAGCCGACGCCACGAGGGGGGAAGGGGGAGATTGAGGAG
GAGATGGCACAGAGAGCTAATCCGATGGAGGTGGTGACGGCAATGATGAA
GGTTTATGCTCAGGCGGGGCTGCCGCAGAAGGCCTGGGATTTGTTTTGTC
AGTTCCGAGAAGGGAGAATTGGAGGGGGGGGAGGGAGAGAGGGAGGAGTG
GGAGGGAAGGGGGGGCCGGATCACGTCATGTACTCGGTCGCGTTGAGGGT
TGCGTCAAATTTGGGAGGGGTTCCAATGGTGGAAAAGCTGTATAAAGAGC
ATAGGGGGCAAGTGGAGGTGGAGGGAGGAGCAGGCACCGAAGTAGGACTG
GGATTGGTACGTGAGGGGGGAGATGGAGAATCGAGGAAGATGGGGGGAAT
GGGTTGGGGTGACGGAGGGATGCGGAGAGGGAGCGCGACGGGAAAGGGAA
AAGATATGACATTACACAGCGTGTTGGCGGCTTATGTGGATGCAGGACAG
TGGGAAAAGGCCTGGGCTATGTTCGATGGGATGGTCGCGGCGGAACGTGC
GGAGGGTGGGGCGTTGTCGATTCAGCTTTACAATGTCTTGTTGCACGGAT
TGATTCGTTCGGGAAGACATGAGGAGGCACGGACCTTAGCTGAGAGGGCC
CGGGCGGAGGGGGTTGAGTTCGATGCTGTGACGATGAAGATACTGGCCAA
GGCAGTAGGGGCGGAGGAATTGTGGACCCCACCGGCCCATGTTTATGTGT
TGGGGGGGATGAGGGACAGGGAGGAGGAAGCGGGAGATGAGGAGGAAGAG
GGAAAGGAGGAATGGGGGAGGAGGAGTGTGCCGGCGGATACGGTGGTGTT
GGATTTGCACAGGTTGAGCGTGCAAGAGGCCCATAATTTGTTGGCAAGGA
CATTTGAGGTCCTGCGATCCCGATATGATGCCGAGGTGGGGGGGGAAGGA
AGAGAACGAGAGAAGACGAGAAAGGATAAGAATCAGACAGAAGATAGAAC
GGAGAATAAGGAGAAGGAGATGGTTGGAATGGAGCTCAAGGATGAAGGAG
GTGAAGGGGTACAAGACCTGCTCCTAATCACAGGTTTTCGTCGCCGGGTG
GGCCCTGGGCAAGGCGCGGCGTTGCTGGCAGACAAAAGTATGCCTGTGAT
TGATCCATGTCAGAAGGACATGGATGACGGCAACGCCCTGCAAGTAGCAG
TGCGCGAATTCCTAGGGGCCCGTGAGATTTATTGGTCATCCCCGCCCTCC
AACCCCGGCAGGCTCAACGTACAGAAAGCATCTCTGCAGCAGTACTTTGA
CCGACAGCGGAAGGCCGAATCCGAGGTGAAATTCTTTCGCCTTACACTTT
TTCGGTACATTCCAGTGGCATCGTTGATGGCATTGTTTTTCCTCGTGCCT
AAGGACGGTTTGCCGTTGTAA

protein sequence of jgi.p|Nanoce1779_2|562539

>mRNA_653-protein ID=mRNA_653-protein|Name=jgi.p|Nanoce1779_2|562539|organism=Nannochloropsis oceanica|type=polypeptide|length=907bp
MLDAEDARARAILLALVEPADQNLAMLAMDDAAVKAQKAADTSPKTAEAR
MDAYNAISTSSHAPTLLFSSSPSSPLAIYCNAFLCSLARAHTTPLLDKAF
AYLGKMRAISPEELGDGVIPSALARNNLIRTCAIVIRGVGLDGIDGGGRQ
RQQQWHPSASHPPSDITHSRADSKKYVGLGEMLFEEYLQSAHEAIRRQPT
NHALLQTYQTDTPPLLSSTIYLYFQAREFSKTITIFQRMREQFFPCPIIP
DAWATSGVIRAHAHNRSPLEAWSLLQDLTQGPLPVEVILLPGLYKSLAHG
IQRQLAQSRHPMPQALELRRLAHRLLRHMRHVAKLRPPLTLWRVFMKIEA
RFGDWRRVQRYMAVMKEYGWVSGSHEYAILIEALGEGKALKVLAHTQEKM
RREGVPFTYVVYLSIIQAHRKSYDLRGAQAAFEAFIEEPTPRGGKGEIEE
EMAQRANPMEVVTAMMKVYAQAGLPQKAWDLFCQFREGRIGGGGGREGGV
GGKGGPDHVMYSVALRVASNLGGVPMVEKLYKEHRGQVEVEGGAGTEVGL
GLVREGGDGESRKMGGMGWGDGGMRRGSATGKGKDMTLHSVLAAYVDAGQ
WEKAWAMFDGMVAAERAEGGALSIQLYNVLLHGLIRSGRHEEARTLAERA
RAEGVEFDAVTMKILAKAVGAEELWTPPAHVYVLGGMRDREEEAGDEEEE
GKEEWGRRSVPADTVVLDLHRLSVQEAHNLLARTFEVLRSRYDAEVGGEG
REREKTRKDKNQTEDRTENKEKEMVGMELKDEGGEGVQDLLLITGFRRRV
GPGQGAALLADKSMPVIDPCQKDMDDGNALQVAVREFLGAREIYWSSPPS
NPGRLNVQKASLQQYFDRQRKAESEVKFFRLTLFRYIPVASLMALFFLVP
KDGLPL*

mRNA from alignment at scaffold_2:103109..105829-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_653 ID=mRNA_653|Name=jgi.p|Nanoce1779_2|562539|organism=Nannochloropsis oceanica|type=mRNA|length=2721bp|location=Sequence derived from alignment at scaffold_2:103109..105829- (Nannochloropsis oceanica)
ATGCTGGACGCTGAAGACGCGCGGGCACGAGCGATTCTCTTGGCGCTGGT
CGAGCCGGCGGACCAAAATCTCGCCATGCTCGCCATGGACGATGCCGCCG
TCAAGGCCCAAAAAGCTGCGGACACCTCGCCAAAAACTGCTGAAGCCCGT
ATGGATGCCTACAATGCTATATCAACCAGCTCTCATGCGCCCACGTTGCT
TTTCTCGTCTTCACCTTCGTCTCCTTTGGCCATATATTGCAACGCCTTCC
TCTGTAGCCTTGCCCGGGCCCATACCACGCCCCTTCTCGATAAGGCTTTT
GCTTACTTGGGTAAGATGCGCGCCATTTCTCCAGAAGAGCTAGGCGATGG
TGTCATTCCGTCAGCTCTGGCCCGCAACAATCTAATTCGAACATGCGCCA
TTGTAATTCGTGGCGTAGGCCTGGATGGGATCGACGGAGGAGGCCGGCAG
AGGCAGCAGCAGTGGCACCCCTCCGCGTCTCACCCGCCCTCCGATATAAC
ACATTCACGAGCGGATAGCAAGAAATACGTTGGCCTAGGAGAGATGCTCT
TTGAAGAATACCTCCAATCCGCCCACGAAGCCATCCGTCGACAGCCCACC
AATCACGCCCTCCTACAGACTTACCAGACTGACACCCCCCCACTCCTCTC
ATCCACCATCTACCTCTACTTCCAAGCCCGGGAATTCTCCAAGACCATCA
CCATCTTCCAGCGCATGCGCGAGCAATTCTTCCCCTGTCCGATTATCCCA
GACGCATGGGCAACCTCTGGTGTGATCCGTGCTCACGCCCACAATCGGAG
CCCTCTTGAGGCATGGTCGCTGCTGCAAGACCTCACCCAAGGTCCACTTC
CTGTGGAAGTCATCCTCCTTCCCGGCCTGTACAAATCGCTCGCGCATGGT
ATTCAGCGTCAGCTTGCACAGAGCCGCCATCCCATGCCACAGGCGCTAGA
ATTGAGGAGGTTGGCACACCGTCTTTTGCGTCATATGAGACATGTTGCGA
AATTGCGGCCACCGTTGACGTTGTGGAGGGTATTCATGAAGATAGAAGCG
AGGTTTGGGGATTGGAGGAGGGTACAGCGGTACATGGCGGTGATGAAAGA
ATATGGGTGGGTGAGTGGAAGCCATGAGTATGCCATTTTGATTGAAGCCC
TGGGAGAAGGGAAGGCTCTCAAGGTGTTGGCCCACACTCAGGAGAAGATG
AGACGGGAGGGGGTACCCTTCACGTACGTGGTGTATTTGTCTATTATCCA
GGCACATAGGAAGAGTTATGATTTGAGAGGAGCCCAGGCGGCGTTTGAGG
CGTTTATTGAGGAGCCGACGCCACGAGGGGGGAAGGGGGAGATTGAGGAG
GAGATGGCACAGAGAGCTAATCCGATGGAGGTGGTGACGGCAATGATGAA
GGTTTATGCTCAGGCGGGGCTGCCGCAGAAGGCCTGGGATTTGTTTTGTC
AGTTCCGAGAAGGGAGAATTGGAGGGGGGGGAGGGAGAGAGGGAGGAGTG
GGAGGGAAGGGGGGGCCGGATCACGTCATGTACTCGGTCGCGTTGAGGGT
TGCGTCAAATTTGGGAGGGGTTCCAATGGTGGAAAAGCTGTATAAAGAGC
ATAGGGGGCAAGTGGAGGTGGAGGGAGGAGCAGGCACCGAAGTAGGACTG
GGATTGGTACGTGAGGGGGGAGATGGAGAATCGAGGAAGATGGGGGGAAT
GGGTTGGGGTGACGGAGGGATGCGGAGAGGGAGCGCGACGGGAAAGGGAA
AAGATATGACATTACACAGCGTGTTGGCGGCTTATGTGGATGCAGGACAG
TGGGAAAAGGCCTGGGCTATGTTCGATGGGATGGTCGCGGCGGAACGTGC
GGAGGGTGGGGCGTTGTCGATTCAGCTTTACAATGTCTTGTTGCACGGAT
TGATTCGTTCGGGAAGACATGAGGAGGCACGGACCTTAGCTGAGAGGGCC
CGGGCGGAGGGGGTTGAGTTCGATGCTGTGACGATGAAGATACTGGCCAA
GGCAGTAGGGGCGGAGGAATTGTGGACCCCACCGGCCCATGTTTATGTGT
TGGGGGGGATGAGGGACAGGGAGGAGGAAGCGGGAGATGAGGAGGAAGAG
GGAAAGGAGGAATGGGGGAGGAGGAGTGTGCCGGCGGATACGGTGGTGTT
GGATTTGCACAGGTTGAGCGTGCAAGAGGCCCATAATTTGTTGGCAAGGA
CATTTGAGGTCCTGCGATCCCGATATGATGCCGAGGTGGGGGGGGAAGGA
AGAGAACGAGAGAAGACGAGAAAGGATAAGAATCAGACAGAAGATAGAAC
GGAGAATAAGGAGAAGGAGATGGTTGGAATGGAGCTCAAGGATGAAGGAG
GTGAAGGGGTACAAGACCTGCTCCTAATCACAGGTTTTCGTCGCCGGGTG
GGCCCTGGGCAAGGCGCGGCGTTGCTGGCAGACAAAAGTATGCCTGTGAT
TGATCCATGTCAGAAGGACATGGATGACGGCAACGCCCTGCAAGTAGCAG
TGCGCGAATTCCTAGGGGCCCGTGAGATTTATTGGTCATCCCCGCCCTCC
AACCCCGGCAGGCTCAACGTACAGAAAGCATCTCTGCAGCAGTACTTTGA
CCGACAGCGGAAGGCCGAATCCGAGGTGAAATTCTTTCGCCTTACACTTT
TTCGGTACATTCCAGTGGCATCGTTGATGGCATTGTTTTTCCTCGTGCCT
AAGGACGGTTTGCCGTTGTAA

Coding sequence (CDS) from alignment at scaffold_2:103109..105829-

>mRNA_653 ID=mRNA_653|Name=jgi.p|Nanoce1779_2|562539|organism=Nannochloropsis oceanica|type=CDS|length=2721bp|location=Sequence derived from alignment at scaffold_2:103109..105829- (Nannochloropsis oceanica)
ATGCTGGACGCTGAAGACGCGCGGGCACGAGCGATTCTCTTGGCGCTGGT
CGAGCCGGCGGACCAAAATCTCGCCATGCTCGCCATGGACGATGCCGCCG
TCAAGGCCCAAAAAGCTGCGGACACCTCGCCAAAAACTGCTGAAGCCCGT
ATGGATGCCTACAATGCTATATCAACCAGCTCTCATGCGCCCACGTTGCT
TTTCTCGTCTTCACCTTCGTCTCCTTTGGCCATATATTGCAACGCCTTCC
TCTGTAGCCTTGCCCGGGCCCATACCACGCCCCTTCTCGATAAGGCTTTT
GCTTACTTGGGTAAGATGCGCGCCATTTCTCCAGAAGAGCTAGGCGATGG
TGTCATTCCGTCAGCTCTGGCCCGCAACAATCTAATTCGAACATGCGCCA
TTGTAATTCGTGGCGTAGGCCTGGATGGGATCGACGGAGGAGGCCGGCAG
AGGCAGCAGCAGTGGCACCCCTCCGCGTCTCACCCGCCCTCCGATATAAC
ACATTCACGAGCGGATAGCAAGAAATACGTTGGCCTAGGAGAGATGCTCT
TTGAAGAATACCTCCAATCCGCCCACGAAGCCATCCGTCGACAGCCCACC
AATCACGCCCTCCTACAGACTTACCAGACTGACACCCCCCCACTCCTCTC
ATCCACCATCTACCTCTACTTCCAAGCCCGGGAATTCTCCAAGACCATCA
CCATCTTCCAGCGCATGCGCGAGCAATTCTTCCCCTGTCCGATTATCCCA
GACGCATGGGCAACCTCTGGTGTGATCCGTGCTCACGCCCACAATCGGAG
CCCTCTTGAGGCATGGTCGCTGCTGCAAGACCTCACCCAAGGTCCACTTC
CTGTGGAAGTCATCCTCCTTCCCGGCCTGTACAAATCGCTCGCGCATGGT
ATTCAGCGTCAGCTTGCACAGAGCCGCCATCCCATGCCACAGGCGCTAGA
ATTGAGGAGGTTGGCACACCGTCTTTTGCGTCATATGAGACATGTTGCGA
AATTGCGGCCACCGTTGACGTTGTGGAGGGTATTCATGAAGATAGAAGCG
AGGTTTGGGGATTGGAGGAGGGTACAGCGGTACATGGCGGTGATGAAAGA
ATATGGGTGGGTGAGTGGAAGCCATGAGTATGCCATTTTGATTGAAGCCC
TGGGAGAAGGGAAGGCTCTCAAGGTGTTGGCCCACACTCAGGAGAAGATG
AGACGGGAGGGGGTACCCTTCACGTACGTGGTGTATTTGTCTATTATCCA
GGCACATAGGAAGAGTTATGATTTGAGAGGAGCCCAGGCGGCGTTTGAGG
CGTTTATTGAGGAGCCGACGCCACGAGGGGGGAAGGGGGAGATTGAGGAG
GAGATGGCACAGAGAGCTAATCCGATGGAGGTGGTGACGGCAATGATGAA
GGTTTATGCTCAGGCGGGGCTGCCGCAGAAGGCCTGGGATTTGTTTTGTC
AGTTCCGAGAAGGGAGAATTGGAGGGGGGGGAGGGAGAGAGGGAGGAGTG
GGAGGGAAGGGGGGGCCGGATCACGTCATGTACTCGGTCGCGTTGAGGGT
TGCGTCAAATTTGGGAGGGGTTCCAATGGTGGAAAAGCTGTATAAAGAGC
ATAGGGGGCAAGTGGAGGTGGAGGGAGGAGCAGGCACCGAAGTAGGACTG
GGATTGGTACGTGAGGGGGGAGATGGAGAATCGAGGAAGATGGGGGGAAT
GGGTTGGGGTGACGGAGGGATGCGGAGAGGGAGCGCGACGGGAAAGGGAA
AAGATATGACATTACACAGCGTGTTGGCGGCTTATGTGGATGCAGGACAG
TGGGAAAAGGCCTGGGCTATGTTCGATGGGATGGTCGCGGCGGAACGTGC
GGAGGGTGGGGCGTTGTCGATTCAGCTTTACAATGTCTTGTTGCACGGAT
TGATTCGTTCGGGAAGACATGAGGAGGCACGGACCTTAGCTGAGAGGGCC
CGGGCGGAGGGGGTTGAGTTCGATGCTGTGACGATGAAGATACTGGCCAA
GGCAGTAGGGGCGGAGGAATTGTGGACCCCACCGGCCCATGTTTATGTGT
TGGGGGGGATGAGGGACAGGGAGGAGGAAGCGGGAGATGAGGAGGAAGAG
GGAAAGGAGGAATGGGGGAGGAGGAGTGTGCCGGCGGATACGGTGGTGTT
GGATTTGCACAGGTTGAGCGTGCAAGAGGCCCATAATTTGTTGGCAAGGA
CATTTGAGGTCCTGCGATCCCGATATGATGCCGAGGTGGGGGGGGAAGGA
AGAGAACGAGAGAAGACGAGAAAGGATAAGAATCAGACAGAAGATAGAAC
GGAGAATAAGGAGAAGGAGATGGTTGGAATGGAGCTCAAGGATGAAGGAG
GTGAAGGGGTACAAGACCTGCTCCTAATCACAGGTTTTCGTCGCCGGGTG
GGCCCTGGGCAAGGCGCGGCGTTGCTGGCAGACAAAAGTATGCCTGTGAT
TGATCCATGTCAGAAGGACATGGATGACGGCAACGCCCTGCAAGTAGCAG
TGCGCGAATTCCTAGGGGCCCGTGAGATTTATTGGTCATCCCCGCCCTCC
AACCCCGGCAGGCTCAACGTACAGAAAGCATCTCTGCAGCAGTACTTTGA
CCGACAGCGGAAGGCCGAATCCGAGGTGAAATTCTTTCGCCTTACACTTT
TTCGGTACATTCCAGTGGCATCGTTGATGGCATTGTTTTTCCTCGTGCCT
AAGGACGGTTTGCCGTTGTAA

Synonyms

Publications