jgi.p|Nanoce1779_2|597211, mRNA_6511 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597211
Unique NamemRNA_6511
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1347
Alignment locationscaffold_18:59953..61299 +

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Properties
Property NameValue
TranscriptId597297
TrackFilteredModels2
ProteinId597211
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:59953..61299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597211gene_6511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597211mRNA_6511-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6511CDS_6511Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Nanoce1779_2|597211|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GGGAAGGAAGAAACTGACAGAGGAGGAGTGTGTGGCACGAGCAAAGAGGG
CTCTGGAGGACTCATTCGCAGACATGGAGGCGTTGATTTTGAAGGCCTTA
ATGGAGGAGGGGAGGAGGCAGGACGGGTCCACGGCTATAGCTGCAGTTGT
CGCTGGAGAGAGATTATTCGTGGCTAATCTGGGGGATTGTCGAGCAGTGC
TTGCGACGCAGACACCCGAGGGGAGGGTGGAAGCGACGAGGCTGTCAGTT
GATCATAAGCCGGACGTGGAAGAAGAAAAAAAGAGGGTTGGGAAGGCGGG
GGGGAGAGTGGAGTTTTCGGGTTGTTGGCGTGTGGCCCATTCGTCGATCC
CCATGCGTTTGGCTGTGTCACGTAGTTTTGGTGATCCTACATTCAAACGT
TATTATAGTGCGGACGCGCCGTCACTGATGCTGAGGAGGCATGTTAGTGG
GACGGGGATGCAGGAGGAGGTTAACGCAGGCCCCCCCTTGCCGTTGCCGC
CTGAAGGATTTGAGCCTTTAGTATCGCCAGTACCGGAGGTAACGTACCAC
CGCCTGACGAGAGATGATCTGTTTTTGGTGTTGGCTTCCGATGGTGTGTG
GGATATGATGAGTGATTCTGAAGCGATTCTTGTGGTTGCGGAAGTGTTTG
AACAGCACAACACCCTCGGAAACGCTGAGGCGCCCTTTACGGAATTCGCG
GTGAAAAAAGCGGCGGAGAGAGTGATTGGTTTGGCGTTGAGTAAGGGAGC
TTATGATAACTGTACGGTGTTGGTCGTAGGTTTTCAGGTTCAATAAGGGT
TGGTTGGGTGGTGTGTGTTTGTATGAAGGTTGTGAGGGGGGAGAGTATGT
GCAAGGGACCGCATGCACATGGTTGATTCAAGCGGACTCTGTCTGGTGTA
TGTAGATAATTCAACCCATTTTGAGCAGGCTGAAAGCGAAGACTGTGGAT
CGGACAAAGTAAATAGACACTTCCCGAACGGGCGGTTTGAGTTTCTCCAC
TAATTGTGCGTGTAAAGATGCAGATACAACAATGAAATAAGGATTTAAAT
AATCAGAGGAAAGAACCTCTGCGGTCGAAACCAAAGACAAAAAGAAGTAG
ACATAGGAACAGGACGCAAAAGGGGGGGGGAGGTCGACGACTCTCGAAAA
GACATCCTCTCCAGCAACATTAGCTTGCCTTGCAACGCAAGACAGAACAA
CCCAACCAGCATCATGCTTGACAACAGCGGGAGATTCCCTCGGCCCGGTG
GAGGAGGTGTTTATTTCCGTACAAATAGTAAATAAAGTGTGCTGTGGTTG
GGGTTGAAGCAAGCAAGAAAAAGAAAAAGAAAAAAAGCTACCTGGTC
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protein sequence of jgi.p|Nanoce1779_2|597211

>mRNA_6511-protein ID=mRNA_6511-protein|Name=jgi.p|Nanoce1779_2|597211|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MEALILKALMEEGRRQDGSTAIAAVVAGERLFVANLGDCRAVLATQTPEG
RVEATRLSVDHKPDVEEEKKRVGKAGGRVEFSGCWRVAHSSIPMRLAVSR
SFGDPTFKRYYSADAPSLMLRRHVSGTGMQEEVNAGPPLPLPPEGFEPLV
SPVPEVTYHRLTRDDLFLVLASDGVWDMMSDSEAILVVAEVFEQHNTLGN
AEAPFTEFAVKKAAERVIGLALSKGAYDNCTVLVVGFQVQ*
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mRNA from alignment at scaffold_18:59953..61299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Nanoce1779_2|597211|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_18:59953..61299+ (Nannochloropsis oceanica)
GGGAAGGAAGAAACTGACAGAGGAGGAGTGTGTGGCACGAGCAAAGAGGG
CTCTGGAGGACTCATTCGCAGACATGGAGGCGTTGATTTTGAAGGCCTTA
ATGGAGGAGGGGAGGAGGCAGGACGGGTCCACGGCTATAGCTGCAGTTGT
CGCTGGAGAGAGATTATTCGTGGCTAATCTGGGGGATTGTCGAGCAGTGC
TTGCGACGCAGACACCCGAGGGGAGGGTGGAAGCGACGAGGCTGTCAGTT
GATCATAAGCCGGACGTGGAAGAAGAAAAAAAGAGGGTTGGGAAGGCGGG
GGGGAGAGTGGAGTTTTCGGGTTGTTGGCGTGTGGCCCATTCGTCGATCC
CCATGCGTTTGGCTGTGTCACGTAGTTTTGGTGATCCTACATTCAAACGT
TATTATAGTGCGGACGCGCCGTCACTGATGCTGAGGAGGCATGTTAGTGG
GACGGGGATGCAGGAGGAGGTTAACGCAGGCCCCCCCTTGCCGTTGCCGC
CTGAAGGATTTGAGCCTTTAGTATCGCCAGTACCGGAGGTAACGTACCAC
CGCCTGACGAGAGATGATCTGTTTTTGGTGTTGGCTTCCGATGGTGTGTG
GGATATGATGAGTGATTCTGAAGCGATTCTTGTGGTTGCGGAAGTGTTTG
AACAGCACAACACCCTCGGAAACGCTGAGGCGCCCTTTACGGAATTCGCG
GTGAAAAAAGCGGCGGAGAGAGTGATTGGTTTGGCGTTGAGTAAGGGAGC
TTATGATAACTGTACGGTGTTGGTCGTAGGTTTTCAGGTTCAATAAGGGT
TGGTTGGGTGGTGTGTGTTTGTATGAAGGTTGTGAGGGGGGAGAGTATGT
GCAAGGGACCGCATGCACATGGTTGATTCAAGCGGACTCTGTCTGGTGTA
TGTAGATAATTCAACCCATTTTGAGCAGGCTGAAAGCGAAGACTGTGGAT
CGGACAAAGTAAATAGACACTTCCCGAACGGGCGGTTTGAGTTTCTCCAC
TAATTGTGCGTGTAAAGATGCAGATACAACAATGAAATAAGGATTTAAAT
AATCAGAGGAAAGAACCTCTGCGGTCGAAACCAAAGACAAAAAGAAGTAG
ACATAGGAACAGGACGCAAAAGGGGGGGGGAGGTCGACGACTCTCGAAAA
GACATCCTCTCCAGCAACATTAGCTTGCCTTGCAACGCAAGACAGAACAA
CCCAACCAGCATCATGCTTGACAACAGCGGGAGATTCCCTCGGCCCGGTG
GAGGAGGTGTTTATTTCCGTACAAATAGTAAATAAAGTGTGCTGTGGTTG
GGGTTGAAGCAAGCAAGAAAAAGAAAAAGAAAAAAAGCTACCTGGTC
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Coding sequence (CDS) from alignment at scaffold_18:59953..61299+

>mRNA_6511 ID=mRNA_6511|Name=jgi.p|Nanoce1779_2|597211|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_18:59953..61299+ (Nannochloropsis oceanica)
ATGGAGGCGTTGATTTTGAAGGCCTTAATGGAGGAGGGGAGGAGGCAGGA
CGGGTCCACGGCTATAGCTGCAGTTGTCGCTGGAGAGAGATTATTCGTGG
CTAATCTGGGGGATTGTCGAGCAGTGCTTGCGACGCAGACACCCGAGGGG
AGGGTGGAAGCGACGAGGCTGTCAGTTGATCATAAGCCGGACGTGGAAGA
AGAAAAAAAGAGGGTTGGGAAGGCGGGGGGGAGAGTGGAGTTTTCGGGTT
GTTGGCGTGTGGCCCATTCGTCGATCCCCATGCGTTTGGCTGTGTCACGT
AGTTTTGGTGATCCTACATTCAAACGTTATTATAGTGCGGACGCGCCGTC
ACTGATGCTGAGGAGGCATGTTAGTGGGACGGGGATGCAGGAGGAGGTTA
ACGCAGGCCCCCCCTTGCCGTTGCCGCCTGAAGGATTTGAGCCTTTAGTA
TCGCCAGTACCGGAGGTAACGTACCACCGCCTGACGAGAGATGATCTGTT
TTTGGTGTTGGCTTCCGATGGTGTGTGGGATATGATGAGTGATTCTGAAG
CGATTCTTGTGGTTGCGGAAGTGTTTGAACAGCACAACACCCTCGGAAAC
GCTGAGGCGCCCTTTACGGAATTCGCGGTGAAAAAAGCGGCGGAGAGAGT
GATTGGTTTGGCGTTGAGTAAGGGAGCTTATGATAACTGTACGGTGTTGG
TCGTAGGTTTTCAGGTTCAATAA
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Synonyms
Publications