jgi.p|Nanoce1779_2|594961, mRNA_6423 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594961
Unique NamemRNA_6423
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1365
Alignment locationscaffold_15:593575..594939 +

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Properties
Property NameValue
TranscriptId595047
TrackFilteredModels2
ProteinId594961
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:593575..594939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594961gene_6423Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594961mRNA_6423-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6423CDS_6423Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6423 ID=mRNA_6423|Name=jgi.p|Nanoce1779_2|594961|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ACAGGCTCCCCGCCTTGACCGGCAATCATGAAGCTGCGGCACCTAGAGTC
AGCACTGAGCCAGGTGAATGGGTTTGGGGAGCCGAAGTGGGGCTTGGAGC
AGTATTTGACTCCGCCGCACCTGGCCGCCCGAGCCTTGCAGTGCGCGGCC
TCCTTTGACGATTTGGAAGGGCGTGTTGTGGCTGATTTTGGATGTGGAAC
AGGCATGCTGCTTGTGGGAGCAGCACTGATGGGTAGCGATGAGGCCCTGA
GCGTGGGTGTGGACGCGGATCCCGACGCCTTGGCCATCGCGCAAACCAAC
CTCCACGGAATGAACGTGGAATGTGCCCTGCTCCGGGCGGACGTCGTTGC
CGAGGCCGGCGTCCCGTTTAGAAGCAGATCCAGTGATGGCAGTAGCATGT
TCGACACAGTACTGATGAATCCTCCCTTTGGGACCAAGAATCAAGGAGTC
GACTTGCTTTTTGTAAAGCGAGGCTTGGCCGTCGCTCCCGTCGTGTATTC
CTTGCACAAGACATCGACCCGCGAATTTCTGATAGGCCGTGGAGCCGCCG
CCTGTGGGTCCGACGTGGGAGCGGAGGTGATAGCGACGATGCATTTCGAT
TTGCCGGCCACTTACAAGTTTCACAAGCAGAAAAGTGTGGATATAGAGGT
CGACTTGTTGCGCTTCTCGCGCGGGGATGAACCACGTTGAAGGCATGACA
AGGTATGTTAAATGTCATATTCCAAAATAGTAGGGTCTATTTTTAAAGTT
GTACACATTTTTACCTTTGTCTTGGTTCCATCTCTCCTACTTTCCTGTTT
GTCTGTACATGCATCGTTTTTAATCAGCTGTCTGCCTTCTTCTTCCTCCG
TACACCGGAGCAAGATCTTTCCAAGGTGTTCACGCTTTCATGTCGGTGCA
AAAACAAGTGGGCAATTAAATTAGCGTCTATTGAGTTGTGGCGCAGGATC
ACCTCCTCTCACCCAGTTTTTGGGCGGGGAACCTTCTCGATCCTTGTGCT
CCCCATCTCAGGAGAGGCCAGTCGTTGCCCGTACAAATACAGATTCTTAG
AGCTTGCATCCCTTCGCCAATTTTTTGTGTCTTCTACGCCTATAATGCAT
CAATTTCCTCCTTTTCATTTCGACCACGCCTACGTATCTCCTACGCACAG
GTAGCAGGCTGCACACGCTAATGGAAGGTCATGGCGGCTATAGTAGCGCG
TAAGAAATTCGTTTGCTCTGCCCTATTATATCTTTTGAGTAAATAGAAAT
AGTGAGGTGTCTATTGGTGGATACAAGTGTACAAGAAAGGGGGAATCAAA
AAAGTTTGCGTGCAGCACGAAGTGAAACCCATCAATTTTCCTGCTTTTGA
TTGGTTGTACGATTA
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protein sequence of jgi.p|Nanoce1779_2|594961

>mRNA_6423-protein ID=mRNA_6423-protein|Name=jgi.p|Nanoce1779_2|594961|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MKLRHLESALSQVNGFGEPKWGLEQYLTPPHLAARALQCAASFDDLEGRV
VADFGCGTGMLLVGAALMGSDEALSVGVDADPDALAIAQTNLHGMNVECA
LLRADVVAEAGVPFRSRSSDGSSMFDTVLMNPPFGTKNQGVDLLFVKRGL
AVAPVVYSLHKTSTREFLIGRGAAACGSDVGAEVIATMHFDLPATYKFHK
QKSVDIEVDLLRFSRGDEPR*
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mRNA from alignment at scaffold_15:593575..594939+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6423 ID=mRNA_6423|Name=jgi.p|Nanoce1779_2|594961|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at scaffold_15:593575..594939+ (Nannochloropsis oceanica)
ACAGGCTCCCCGCCTTGACCGGCAATCATGAAGCTGCGGCACCTAGAGTC
AGCACTGAGCCAGGTGAATGGGTTTGGGGAGCCGAAGTGGGGCTTGGAGC
AGTATTTGACTCCGCCGCACCTGGCCGCCCGAGCCTTGCAGTGCGCGGCC
TCCTTTGACGATTTGGAAGGGCGTGTTGTGGCTGATTTTGGATGTGGAAC
AGGCATGCTGCTTGTGGGAGCAGCACTGATGGGTAGCGATGAGGCCCTGA
GCGTGGGTGTGGACGCGGATCCCGACGCCTTGGCCATCGCGCAAACCAAC
CTCCACGGAATGAACGTGGAATGTGCCCTGCTCCGGGCGGACGTCGTTGC
CGAGGCCGGCGTCCCGTTTAGAAGCAGATCCAGTGATGGCAGTAGCATGT
TCGACACAGTACTGATGAATCCTCCCTTTGGGACCAAGAATCAAGGAGTC
GACTTGCTTTTTGTAAAGCGAGGCTTGGCCGTCGCTCCCGTCGTGTATTC
CTTGCACAAGACATCGACCCGCGAATTTCTGATAGGCCGTGGAGCCGCCG
CCTGTGGGTCCGACGTGGGAGCGGAGGTGATAGCGACGATGCATTTCGAT
TTGCCGGCCACTTACAAGTTTCACAAGCAGAAAAGTGTGGATATAGAGGT
CGACTTGTTGCGCTTCTCGCGCGGGGATGAACCACGTTGAAGGCATGACA
AGGTATGTTAAATGTCATATTCCAAAATAGTAGGGTCTATTTTTAAAGTT
GTACACATTTTTACCTTTGTCTTGGTTCCATCTCTCCTACTTTCCTGTTT
GTCTGTACATGCATCGTTTTTAATCAGCTGTCTGCCTTCTTCTTCCTCCG
TACACCGGAGCAAGATCTTTCCAAGGTGTTCACGCTTTCATGTCGGTGCA
AAAACAAGTGGGCAATTAAATTAGCGTCTATTGAGTTGTGGCGCAGGATC
ACCTCCTCTCACCCAGTTTTTGGGCGGGGAACCTTCTCGATCCTTGTGCT
CCCCATCTCAGGAGAGGCCAGTCGTTGCCCGTACAAATACAGATTCTTAG
AGCTTGCATCCCTTCGCCAATTTTTTGTGTCTTCTACGCCTATAATGCAT
CAATTTCCTCCTTTTCATTTCGACCACGCCTACGTATCTCCTACGCACAG
GTAGCAGGCTGCACACGCTAATGGAAGGTCATGGCGGCTATAGTAGCGCG
TAAGAAATTCGTTTGCTCTGCCCTATTATATCTTTTGAGTAAATAGAAAT
AGTGAGGTGTCTATTGGTGGATACAAGTGTACAAGAAAGGGGGAATCAAA
AAAGTTTGCGTGCAGCACGAAGTGAAACCCATCAATTTTCCTGCTTTTGA
TTGGTTGTACGATTA
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Coding sequence (CDS) from alignment at scaffold_15:593575..594939+

>mRNA_6423 ID=mRNA_6423|Name=jgi.p|Nanoce1779_2|594961|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_15:593575..594939+ (Nannochloropsis oceanica)
ATGAAGCTGCGGCACCTAGAGTCAGCACTGAGCCAGGTGAATGGGTTTGG
GGAGCCGAAGTGGGGCTTGGAGCAGTATTTGACTCCGCCGCACCTGGCCG
CCCGAGCCTTGCAGTGCGCGGCCTCCTTTGACGATTTGGAAGGGCGTGTT
GTGGCTGATTTTGGATGTGGAACAGGCATGCTGCTTGTGGGAGCAGCACT
GATGGGTAGCGATGAGGCCCTGAGCGTGGGTGTGGACGCGGATCCCGACG
CCTTGGCCATCGCGCAAACCAACCTCCACGGAATGAACGTGGAATGTGCC
CTGCTCCGGGCGGACGTCGTTGCCGAGGCCGGCGTCCCGTTTAGAAGCAG
ATCCAGTGATGGCAGTAGCATGTTCGACACAGTACTGATGAATCCTCCCT
TTGGGACCAAGAATCAAGGAGTCGACTTGCTTTTTGTAAAGCGAGGCTTG
GCCGTCGCTCCCGTCGTGTATTCCTTGCACAAGACATCGACCCGCGAATT
TCTGATAGGCCGTGGAGCCGCCGCCTGTGGGTCCGACGTGGGAGCGGAGG
TGATAGCGACGATGCATTTCGATTTGCCGGCCACTTACAAGTTTCACAAG
CAGAAAAGTGTGGATATAGAGGTCGACTTGTTGCGCTTCTCGCGCGGGGA
TGAACCACGTTGA
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Synonyms
Publications