jgi.p|Nanoce1779_2|594958, mRNA_6421 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594958
Unique Name	mRNA_6421
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2203
Alignment location	scaffold_15:588689..590891 +

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Properties


Property Name	Value
TranscriptId	595044
Track	FilteredModels2
ProteinId	594958

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:588689..590891 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594958	gene_6421	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594958	mRNA_6421-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6421	CDS_6421	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:588689..590891+
coding sequence from alignment at scaffold_15:588689..590891+

mRNA sequence

>mRNA_6421 ID=mRNA_6421|Name=jgi.p|Nanoce1779_2|594958|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp
CAGAGTTCAAATTTACCGGTCCCCCCTCTCTTCACGCCACTGCTGTAGGA
GCAACCAGCACGCGTAAGGCCGCAATATGCAGGGTTTTCTTCGCTTAGCG
AAAAAGATGGTTAGGAGGAAGGAGGAGGACCCCCATGCCCCGGTGGCAGC
CTGCGGGTCGACAGCGGCAATGACGCCGACGACACCGATGAAAAGGTCTC
ATAGCCATGAATCTCTGGGCATTGGGCGCCTTAACGAGTTCAGGGAGCAG
TTGCACGATGTGTACGAGTCTTTCACCCCGCACATCCAGACGTTTGACGC
TATCCGAGAGGAACTGGGCACAATGCCGATGGAGATCCCGGCCCCGGTGC
ACTACCCGCCCGCACCGCCGTTCACAGTGGACTGTTTCGACTTTACCGTG
GACTCGGACGAGTCGGAGAGTGGCACACCGCCAGATTCACCCCTGCCCGC
CCCCCAGCCCGTGGGACCCCTCAGTTTGCAGGAAGAAGATTCTTCGACAG
CCCCGCAGCCGGCCCGACCCCCAACCCGACACCTCGAATATGCACCAGGC
ACGCTGCCTACCTCCTTCAGCTTTGCTTGCGGGGGTTGGCTGCAGTTTTA
TATGTTTGGGGTTGCGAAGTGCCTCAAGGATCACGGTTTGCACAAAGAGG
CAAAGTTCTCGGGTTGTTCAGCGGGGGCGCTGACGGCGCTAGGGTTGTGC
GTGGAGCCCAGCTCGTTCGACAAGGCTGTCGAGTACTGCAAGGCAGTATG
TATTCCTCGCTGTCGCGGTACATTGTTTGGGCCGTTTTTGCTCCATAAAT
ACGTGCGTGGCTGCTTAGATTACAGTGGATGTTTGGACGAGCACTGGGAG
CGCGCCAACGGTCGGCTGTCGGTTGGAGTGACGGGCCTGACCGACTTCCG
GGCCATCCGCATCGAAGAATTTGCATCTAAGGAGGAGCTCATTATCGCGC
TCATGGCATCAGCCGCTGCATTTCCCCTGTCGCCGCCAGTGCGACGCCGG
GGTAAGTGGCTGATCGACGGGGGCATCTCCGACTTCCAGCCTGTGCTGGA
GGCACGAACTGTGACTGTGAACCCCTTCTATTTCTCCCAAGCTGACATCC
GACCCTCGCGCTATGTCCCCGCCTGGTGGTCACTGCTACCGCCCTCCCAC
TCGGGCACGGTGGACTGGCTCTATGACCTTGGCTTCTCGGACACCCTGCG
GTGGATGCGAACAGTCAACCTCGAGGCGAGGTGCGCCGCCCGCTGCCGGA
AGGACCCCTCCGACCTCCTCTCCTGTCGACACCGGCCCACGCGGGCGAAG
CACCCGTTCGATGAGCATAACAAGTCGTCTTTTGGCCGCTTTTTCGGGTA
TGGACGCTGGCCTATTCTGTTTGACTTGCTGACCATGCTGCTCGTGGAAA
CTGTTTGGCGCACCACCGCCTACACCCTCATTTATGCTGAGCTCACCCTC
AAGCTCCTCTACGTTGGCATCTGTGCACTTGCCACCGAGGCCTTTGCCAT
GCGATGGGCTCTTCTTGCCGGGGGGATGCTGCTAGCCCCGTCACTCGCGC
ATATGCTTGCTGCCCTGGCTGCCATCATCACCCTCAAACTCTGCCTGGAC
GGCTCGGCGGGTTTGGGGCAATGGCGGGTGGCCTTGGAGCTGGCTGCTTC
CCTATTGAGTGTCAGTCTCTTCCTGCGTTCGCTTCCTATCGTGGGTAACA
GGTTTCATTTACGGAAGCACCACAAGCTATTTCGGCAGTCCCTCGTGTAC
CGGATCATGGTTCACATCATTTAACAGATTGAACTTCAAGTTTTTGACGC
AGGATTCAAAGAAACAAGCCATACTAGACGCAATTGAGGTATCTGGTGTT
CAGGCTCCTTTCTGTCAACCTTTACCAGGAAGAGAGAAGGAATTCGACCT
CTTTTTTAGCTTGTCTTCGTTCCCTTTCCAAGGGACAACCAGCCAGAAAG
CCGGAAAGAGGCTCATCGTCGCTTGTAGGCGCGCTCTTTTGTGTATGTGT
ACATTTGATAGAGCGAGGAGGAGGAAGAATCAGCAGCAGCAGCATAAAAG
CAGTATTGCTACCGATTAATCGATGAGTGGAATGCTTGATTTTGTTTTGT
GGAGATACGTCTGTTTAGGGAGTGATTCGTATTCTCGAGGAGCAAGACAA
AAAAATAAAATTACATTGCTAAAGAAAATCGGACTTGATGGCCTCCATAG
CAC

protein sequence of jgi.p|Nanoce1779_2|594958

>mRNA_6421-protein ID=mRNA_6421-protein|Name=jgi.p|Nanoce1779_2|594958|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MQGFLRLAKKMVRRKEEDPHAPVAACGSTAAMTPTTPMKRSHSHESLGIG
RLNEFREQLHDVYESFTPHIQTFDAIREELGTMPMEIPAPVHYPPAPPFT
VDCFDFTVDSDESESGTPPDSPLPAPQPVGPLSLQEEDSSTAPQPARPPT
RHLEYAPGTLPTSFSFACGGWLQFYMFGVAKCLKDHGLHKEAKFSGCSAG
ALTALGLCVEPSSFDKAVEYCKAVCIPRCRGTLFGPFLLHKYVRGCLDYS
GCLDEHWERANGRLSVGVTGLTDFRAIRIEEFASKEELIIALMASAAAFP
LSPPVRRRGKWLIDGGISDFQPVLEARTVTVNPFYFSQADIRPSRYVPAW
WSLLPPSHSGTVDWLYDLGFSDTLRWMRTVNLEARCAARCRKDPSDLLSC
RHRPTRAKHPFDEHNKSSFGRFFGYGRWPILFDLLTMLLVETVWRTTAYT
LIYAELTLKLLYVGICALATEAFAMRWALLAGGMLLAPSLAHMLAALAAI
ITLKLCLDGSAGLGQWRVALELAASLLSVSLFLRSLPIVGNRFHLRKHHK
LFRQSLVYRIMVHII*

mRNA from alignment at scaffold_15:588689..590891+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6421 ID=mRNA_6421|Name=jgi.p|Nanoce1779_2|594958|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at scaffold_15:588689..590891+ (Nannochloropsis oceanica)
CAGAGTTCAAATTTACCGGTCCCCCCTCTCTTCACGCCACTGCTGTAGGA
GCAACCAGCACGCGTAAGGCCGCAATATGCAGGGTTTTCTTCGCTTAGCG
AAAAAGATGGTTAGGAGGAAGGAGGAGGACCCCCATGCCCCGGTGGCAGC
CTGCGGGTCGACAGCGGCAATGACGCCGACGACACCGATGAAAAGGTCTC
ATAGCCATGAATCTCTGGGCATTGGGCGCCTTAACGAGTTCAGGGAGCAG
TTGCACGATGTGTACGAGTCTTTCACCCCGCACATCCAGACGTTTGACGC
TATCCGAGAGGAACTGGGCACAATGCCGATGGAGATCCCGGCCCCGGTGC
ACTACCCGCCCGCACCGCCGTTCACAGTGGACTGTTTCGACTTTACCGTG
GACTCGGACGAGTCGGAGAGTGGCACACCGCCAGATTCACCCCTGCCCGC
CCCCCAGCCCGTGGGACCCCTCAGTTTGCAGGAAGAAGATTCTTCGACAG
CCCCGCAGCCGGCCCGACCCCCAACCCGACACCTCGAATATGCACCAGGC
ACGCTGCCTACCTCCTTCAGCTTTGCTTGCGGGGGTTGGCTGCAGTTTTA
TATGTTTGGGGTTGCGAAGTGCCTCAAGGATCACGGTTTGCACAAAGAGG
CAAAGTTCTCGGGTTGTTCAGCGGGGGCGCTGACGGCGCTAGGGTTGTGC
GTGGAGCCCAGCTCGTTCGACAAGGCTGTCGAGTACTGCAAGGCAGTATG
TATTCCTCGCTGTCGCGGTACATTGTTTGGGCCGTTTTTGCTCCATAAAT
ACGTGCGTGGCTGCTTAGATTACAGTGGATGTTTGGACGAGCACTGGGAG
CGCGCCAACGGTCGGCTGTCGGTTGGAGTGACGGGCCTGACCGACTTCCG
GGCCATCCGCATCGAAGAATTTGCATCTAAGGAGGAGCTCATTATCGCGC
TCATGGCATCAGCCGCTGCATTTCCCCTGTCGCCGCCAGTGCGACGCCGG
GGTAAGTGGCTGATCGACGGGGGCATCTCCGACTTCCAGCCTGTGCTGGA
GGCACGAACTGTGACTGTGAACCCCTTCTATTTCTCCCAAGCTGACATCC
GACCCTCGCGCTATGTCCCCGCCTGGTGGTCACTGCTACCGCCCTCCCAC
TCGGGCACGGTGGACTGGCTCTATGACCTTGGCTTCTCGGACACCCTGCG
GTGGATGCGAACAGTCAACCTCGAGGCGAGGTGCGCCGCCCGCTGCCGGA
AGGACCCCTCCGACCTCCTCTCCTGTCGACACCGGCCCACGCGGGCGAAG
CACCCGTTCGATGAGCATAACAAGTCGTCTTTTGGCCGCTTTTTCGGGTA
TGGACGCTGGCCTATTCTGTTTGACTTGCTGACCATGCTGCTCGTGGAAA
CTGTTTGGCGCACCACCGCCTACACCCTCATTTATGCTGAGCTCACCCTC
AAGCTCCTCTACGTTGGCATCTGTGCACTTGCCACCGAGGCCTTTGCCAT
GCGATGGGCTCTTCTTGCCGGGGGGATGCTGCTAGCCCCGTCACTCGCGC
ATATGCTTGCTGCCCTGGCTGCCATCATCACCCTCAAACTCTGCCTGGAC
GGCTCGGCGGGTTTGGGGCAATGGCGGGTGGCCTTGGAGCTGGCTGCTTC
CCTATTGAGTGTCAGTCTCTTCCTGCGTTCGCTTCCTATCGTGGGTAACA
GGTTTCATTTACGGAAGCACCACAAGCTATTTCGGCAGTCCCTCGTGTAC
CGGATCATGGTTCACATCATTTAACAGATTGAACTTCAAGTTTTTGACGC
AGGATTCAAAGAAACAAGCCATACTAGACGCAATTGAGGTATCTGGTGTT
CAGGCTCCTTTCTGTCAACCTTTACCAGGAAGAGAGAAGGAATTCGACCT
CTTTTTTAGCTTGTCTTCGTTCCCTTTCCAAGGGACAACCAGCCAGAAAG
CCGGAAAGAGGCTCATCGTCGCTTGTAGGCGCGCTCTTTTGTGTATGTGT
ACATTTGATAGAGCGAGGAGGAGGAAGAATCAGCAGCAGCAGCATAAAAG
CAGTATTGCTACCGATTAATCGATGAGTGGAATGCTTGATTTTGTTTTGT
GGAGATACGTCTGTTTAGGGAGTGATTCGTATTCTCGAGGAGCAAGACAA
AAAAATAAAATTACATTGCTAAAGAAAATCGGACTTGATGGCCTCCATAG
CAC

Coding sequence (CDS) from alignment at scaffold_15:588689..590891+

>mRNA_6421 ID=mRNA_6421|Name=jgi.p|Nanoce1779_2|594958|organism=Nannochloropsis oceanica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_15:588689..590891+ (Nannochloropsis oceanica)
ATGCAGGGTTTTCTTCGCTTAGCGAAAAAGATGGTTAGGAGGAAGGAGGA
GGACCCCCATGCCCCGGTGGCAGCCTGCGGGTCGACAGCGGCAATGACGC
CGACGACACCGATGAAAAGGTCTCATAGCCATGAATCTCTGGGCATTGGG
CGCCTTAACGAGTTCAGGGAGCAGTTGCACGATGTGTACGAGTCTTTCAC
CCCGCACATCCAGACGTTTGACGCTATCCGAGAGGAACTGGGCACAATGC
CGATGGAGATCCCGGCCCCGGTGCACTACCCGCCCGCACCGCCGTTCACA
GTGGACTGTTTCGACTTTACCGTGGACTCGGACGAGTCGGAGAGTGGCAC
ACCGCCAGATTCACCCCTGCCCGCCCCCCAGCCCGTGGGACCCCTCAGTT
TGCAGGAAGAAGATTCTTCGACAGCCCCGCAGCCGGCCCGACCCCCAACC
CGACACCTCGAATATGCACCAGGCACGCTGCCTACCTCCTTCAGCTTTGC
TTGCGGGGGTTGGCTGCAGTTTTATATGTTTGGGGTTGCGAAGTGCCTCA
AGGATCACGGTTTGCACAAAGAGGCAAAGTTCTCGGGTTGTTCAGCGGGG
GCGCTGACGGCGCTAGGGTTGTGCGTGGAGCCCAGCTCGTTCGACAAGGC
TGTCGAGTACTGCAAGGCAGTATGTATTCCTCGCTGTCGCGGTACATTGT
TTGGGCCGTTTTTGCTCCATAAATACGTGCGTGGCTGCTTAGATTACAGT
GGATGTTTGGACGAGCACTGGGAGCGCGCCAACGGTCGGCTGTCGGTTGG
AGTGACGGGCCTGACCGACTTCCGGGCCATCCGCATCGAAGAATTTGCAT
CTAAGGAGGAGCTCATTATCGCGCTCATGGCATCAGCCGCTGCATTTCCC
CTGTCGCCGCCAGTGCGACGCCGGGGTAAGTGGCTGATCGACGGGGGCAT
CTCCGACTTCCAGCCTGTGCTGGAGGCACGAACTGTGACTGTGAACCCCT
TCTATTTCTCCCAAGCTGACATCCGACCCTCGCGCTATGTCCCCGCCTGG
TGGTCACTGCTACCGCCCTCCCACTCGGGCACGGTGGACTGGCTCTATGA
CCTTGGCTTCTCGGACACCCTGCGGTGGATGCGAACAGTCAACCTCGAGG
CGAGGTGCGCCGCCCGCTGCCGGAAGGACCCCTCCGACCTCCTCTCCTGT
CGACACCGGCCCACGCGGGCGAAGCACCCGTTCGATGAGCATAACAAGTC
GTCTTTTGGCCGCTTTTTCGGGTATGGACGCTGGCCTATTCTGTTTGACT
TGCTGACCATGCTGCTCGTGGAAACTGTTTGGCGCACCACCGCCTACACC
CTCATTTATGCTGAGCTCACCCTCAAGCTCCTCTACGTTGGCATCTGTGC
ACTTGCCACCGAGGCCTTTGCCATGCGATGGGCTCTTCTTGCCGGGGGGA
TGCTGCTAGCCCCGTCACTCGCGCATATGCTTGCTGCCCTGGCTGCCATC
ATCACCCTCAAACTCTGCCTGGACGGCTCGGCGGGTTTGGGGCAATGGCG
GGTGGCCTTGGAGCTGGCTGCTTCCCTATTGAGTGTCAGTCTCTTCCTGC
GTTCGCTTCCTATCGTGGGTAACAGGTTTCATTTACGGAAGCACCACAAG
CTATTTCGGCAGTCCCTCGTGTACCGGATCATGGTTCACATCATTTAA

Synonyms

Publications