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Properties
| Property Name | Value |
|---|
| TranscriptId | 594508 |
| Track | FilteredModels2 |
| ProteinId | 594422 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:211002..213295 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6278 ID=mRNA_6278|Name=jgi.p|Nanoce1779_2|594422|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
CAGACTCAGCCCTAAAACCCGCCTTTAGACAAGATGAAGATCACCATGTC
CTCCGCCGCCTGCCTGGCCTTGCTGATGGCACCCTTGGCCCTGGTCCGCG
CCGGTACTTCCATGGAAGACCTTGAGAAGATGGAGTCCTGGAGCTACGTC
CCTAACGAGAATTCCAACGCATGTGTCGGTGCTGATGCGAAGTCCTGGGG
ATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCGTTGCGGCCCCAACAACT
GGATCCACATCAACGAGACCACCACCGTCAGGTGTGCCAACACGCCGGGC
AATCAGCAGAGCCCCATTAACTTCCAGACTGTCGGCAAATTCCGTGACAT
CGTGTCTTTGAAGAAGGAGGATGCCGCCATGACCTTCTCGGGCCACAAAT
GCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGTGGGAGGTTGTCACCCCC
GATGACTGCGGCTTCAAGATGACAATTGGAGGCGTCGACTACAAGCTCCT
GCAGTTCCACTTCCATAACGCCGAGCACACGGTCAACTATGCCTACATGC
CTCTTGAAGTCCACCTAGTGCACCAGAGCGTCGAGGACAAAGACCAAATC
CTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCGACCTCCGAGTTCTTCGA
GAACCTCCAGAAGGGCCAGGAGAACGCCAACCCCGACAAGCCCGACCTGG
CCACCAAAAACATGATCAACGCCTATGATGTCCTCCCCAAAGACATGGCA
TTCTGGCACTACGTCGGATCCCTCACCACCCCTCCCTGCCAGACCCGCGA
GGGAGCCTCGGTCCAGTGGTACGTCTTCAAGACGCCCAACACCCTCTCCT
ACGAGCAGCTCTACTTCTTCACTTCCTACTTCCGTGACCTGCCCCTGGCC
AACAACGGCCGTATCTCCCGTAATGTCCAGGACGTCTTGGAGGGCACCAC
CATCTACTCCTTCCCTTAAACCGTCGGTTGGTCGGAGAAGAAGGAAGGAT
GGAGGGAAGGAGCGAAGGAAGGTCAATGTACCGATAGAGTCTTTCTCACT
TATCTGAAATAAGGGAGGAGGAGGACGGGATAATCAAAAGCAATCAGCAG
GGCAATTATATAATTTGGAGAAAAGCAACATCCAACTGAGCGTCTCCTTG
CGTGTGTTTCAGCCTGTGTCGGATGTCCGGCGCGGGAGTGATGGCGCTTG
CTTGTCTTGATTTGGATGCGTGTGAATGTGCTCTGTGTAGGTGATAGTTC
AGGCAGGGGTTATATTTGATAGTGACGCTCTGTGTAAGTGATAGAATTGC
AGAGGCTATATATGGTGGGGAACGCCGAGAAGTGTATGCGGGATAAGCAG
TGGCTGTTGTCTGTCTCAGATACAGACCATATCCCCTCTCATTTATTTTT
TAAACAAGGACCTTTTTCTCAAAGAAATAGGAGGGGAAAGAAAAGAGTAC
TGCCTGCTTTAAATAAAAAAGTGCAACCCTGTCCTTGGGAAAGAAACTTA
GCAAGAGAGAAAGCGCAAAAAACACATGAACAGCCCTGCGACAAGGACGT
GATTTTATCGAGTCCTTTGAACAAAATGCATAAAAAAAAAAGCCGAGACG
CGAACCGAGTAACAA back to topprotein sequence of jgi.p|Nanoce1779_2|594422 >mRNA_6278-protein ID=mRNA_6278-protein|Name=jgi.p|Nanoce1779_2|594422|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MKITMSSAACLALLMAPLALVRAGTSMEDLEKMESWSYVPNENSNACVGA
DAKSWGCCGKPEDGKERCGPNNWIHINETTTVRCANTPGNQQSPINFQTV
GKFRDIVSLKKEDAAMTFSGHKCEAFVEFKEGTWEVVTPDDCGFKMTIGG
VDYKLLQFHFHNAEHTVNYAYMPLEVHLVHQSVEDKDQILVLSTFFAPGA
TSEFFENLQKGQENANPDKPDLATKNMINAYDVLPKDMAFWHYVGSLTTP
PCQTREGASVQWYVFKTPNTLSYEQLYFFTSYFRDLPLANNGRISRNVQD
VLEGTTIYSFP* back to topmRNA from alignment at scaffold_15:211002..213295+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6278 ID=mRNA_6278|Name=jgi.p|Nanoce1779_2|594422|organism=Nannochloropsis oceanica|type=mRNA|length=2294bp|location=Sequence derived from alignment at scaffold_15:211002..213295+ (Nannochloropsis oceanica)
CAGACTCAGCCCTAAAACCCGCCTTTAGACAAGATGAAGATCACCATGTC
CTCCGCCGCCTGCCTGGCCTTGCTGATGGCACCCTTGGCCCTGGTCCGCG
CCGGTACTTCCATGGAAGACCTTGAGAAGATGGAGTCCTGGAGCTACGTC
CCTGTAAGTACTTACTCGCCTCGAGTAATGAGGTTGGTTGGTCGGGTTTG
GACGTGGTCGTGTTCGTGTTCATTGCGCCGATCTTGTGTCTTTTCCCCGC
GGGGGGCGCAACGACACAGAACAATATCCTCCTACTCCACATAGTGCCTC
TCCTCTTTCGTCCGTCCATCGTATTTGTTAGCATCTTGTCACATGAGAGT
GAGGTCTTCTTCGCTCTGTTTCTCTCCATTGCCTGTCTGTACATACTGCT
ATTTACCTCCCCTCATCATGCAACCTCATCTCACCTCCCCTCCCTCCCTC
CCTACATCTATCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTTCTTT
CCTTCCTATCTTTCACCAGAACGAGAATTCCAACGCATGTGTCGGTGCTG
ATGCGAAGTCCTGGGGATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCGT
TGCGGCCCCAACAACTGGATCCACATCAACGAGACCACCACCGTCAGGTG
TGCCAACACGCCGGGCAATCAGCAGAGGTATGCACATGCACGCATGCATC
AGCACGCCTTCTATTCTCGACGTCTTTTTGTCTCCTTTCCCCTCTTCCCC
TCTCTTACTTATTTCCCGTCTCCTCTCTCTCCTCACCTTTCCTACACGCA
AGCGTTAGCTCACCTTCCTTCCCTTTTCTCCCTCCCCATTTCTCCCACCG
TCGCACTCCCTGTGTCCTCCAGCCCCATTAACTTCCAGACTGTCGGCAAA
TTCCGTGACATCGTGTCTTTGAAGAAGGAGGATGCCGCCATGACCTTCTC
GGGCCACAAATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGTGGGAGG
TTGTCACCCCCGATGACTGCGGCTTCAAGATGACAATTGGAGGCGTCGAC
TACAAGCTCCTGCAGTTCCACTTCCATAACGCCGAGCACACGGTCAACTA
TGCCTACATGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGTCGAGGACA
AAGACCAAATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCGACCTCC
GAGTTCTTCGAGAACCTCCAGAAGGGCCAGGAGAACGCCAACCCCGACAA
GCCCGACCTGGCCACCAAAAACATGATCAACGCCTATGATGTCCTCCCCA
AAGACATGGCATTCTGGCACTACGTCGGATCCCTCACCACCCCTCCCTGC
CAGACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTTCCCTCCTTCCCTCC
CTACTCCTTACCCCCTGGTCCCTTTCCCTGAGTCGACACCACGCACCAGT
GTATAATATAATAATCCTTTCCATTCCCTCTTCCTCCCCCCCTCCAGGTA
CGTCTTCAAGACGCCCAACACCCTCTCCTACGAGCAGCTCTACTTCTTCA
CTTCCTACTTCCGTGACCTGCCCCTGGCCAACAACGGCCGTATCTCCCGT
AATGTCCAGGACGTCTTGGAGGGCACCACCATCTACTCCTTCCCTTAAAC
CGTCGGTTGGTCGGAGAAGAAGGAAGGATGGAGGGAAGGAGCGAAGGAAG
GTCAATGTACCGATAGAGTCTTTCTCACTTATCTGAAATAAGGGAGGAGG
AGGACGGGATAATCAAAAGCAATCAGCAGGGCAATTATATAATTTGGAGA
AAAGCAACATCCAACTGAGCGTCTCCTTGCGTGTGTTTCAGCCTGTGTCG
GATGTCCGGCGCGGGAGTGATGGCGCTTGCTTGTCTTGATTTGGATGCGT
GTGAATGTGCTCTGTGTAGGTGATAGTTCAGGCAGGGGTTATATTTGATA
GTGACGCTCTGTGTAAGTGATAGAATTGCAGAGGCTATATATGGTGGGGA
ACGCCGAGAAGTGTATGCGGGATAAGCAGTGGCTGTTGTCTGTCTCAGAT
ACAGACCATATCCCCTCTCATTTATTTTTTAAACAAGGACCTTTTTCTCA
AAGAAATAGGAGGGGAAAGAAAAGAGTACTGCCTGCTTTAAATAAAAAAG
TGCAACCCTGTCCTTGGGAAAGAAACTTAGCAAGAGAGAAAGCGCAAAAA
ACACATGAACAGCCCTGCGACAAGGACGTGATTTTATCGAGTCCTTTGAA
CAAAATGCATAAAAAAAAAAGCCGAGACGCGAACCGAGTAACAA back to topCoding sequence (CDS) from alignment at scaffold_15:211002..213295+ >mRNA_6278 ID=mRNA_6278|Name=jgi.p|Nanoce1779_2|594422|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_15:211002..213295+ (Nannochloropsis oceanica)
ATGAAGATCACCATGTCCTCCGCCGCCTGCCTGGCCTTGCTGATGGCACC
CTTGGCCCTGGTCCGCGCCGGTACTTCCATGGAAGACCTTGAGAAGATGG
AGTCCTGGAGCTACGTCCCTAACGAGAATTCCAACGCATGTGTCGGTGCT
GATGCGAAGTCCTGGGGATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCG
TTGCGGCCCCAACAACTGGATCCACATCAACGAGACCACCACCGTCAGGT
GTGCCAACACGCCGGGCAATCAGCAGAGCCCCATTAACTTCCAGACTGTC
GGCAAATTCCGTGACATCGTGTCTTTGAAGAAGGAGGATGCCGCCATGAC
CTTCTCGGGCCACAAATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGT
GGGAGGTTGTCACCCCCGATGACTGCGGCTTCAAGATGACAATTGGAGGC
GTCGACTACAAGCTCCTGCAGTTCCACTTCCATAACGCCGAGCACACGGT
CAACTATGCCTACATGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGTCG
AGGACAAAGACCAAATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCG
ACCTCCGAGTTCTTCGAGAACCTCCAGAAGGGCCAGGAGAACGCCAACCC
CGACAAGCCCGACCTGGCCACCAAAAACATGATCAACGCCTATGATGTCC
TCCCCAAAGACATGGCATTCTGGCACTACGTCGGATCCCTCACCACCCCT
CCCTGCCAGACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTCTTCAAGAC
GCCCAACACCCTCTCCTACGAGCAGCTCTACTTCTTCACTTCCTACTTCC
GTGACCTGCCCCTGGCCAACAACGGCCGTATCTCCCGTAATGTCCAGGAC
GTCTTGGAGGGCACCACCATCTACTCCTTCCCTTAAATGAAGATCACCAT
GTCCTCCGCCGCCTGCCTGGCCTTGCTGATGGCACCCTTGGCCCTGGTCC
GCGCCGGTACTTCCATGGAAGACCTTGAGAAGATGGAGTCCTGGAGCTAC
GTCCCTAACGAGAATTCCAACGCATGTGTCGGTGCTGATGCGAAGTCCTG
GGGATGCTGCGGAAAGCCGGAGGACGGCAAGGAGCGTTGCGGCCCCAACA
ACTGGATCCACATCAACGAGACCACCACCGTCAGGTGTGCCAACACGCCG
GGCAATCAGCAGAGCCCCATTAACTTCCAGACTGTCGGCAAATTCCGTGA
CATCGTGTCTTTGAAGAAGGAGGATGCCGCCATGACCTTCTCGGGCCACA
AATGCGAGGCCTTTGTGGAGTTCAAAGAAGGGACGTGGGAGGTTGTCACC
CCCGATGACTGCGGCTTCAAGATGACAATTGGAGGCGTCGACTACAAGCT
CCTGCAGTTCCACTTCCATAACGCCGAGCACACGGTCAACTATGCCTACA
TGCCTCTTGAAGTCCACCTAGTGCACCAGAGCGTCGAGGACAAAGACCAA
ATCCTCGTCCTGAGTACCTTTTTCGCCCCAGGCGCGACCTCCGAGTTCTT
CGAGAACCTCCAGAAGGGCCAGGAGAACGCCAACCCCGACAAGCCCGACC
TGGCCACCAAAAACATGATCAACGCCTATGATGTCCTCCCCAAAGACATG
GCATTCTGGCACTACGTCGGATCCCTCACCACCCCTCCCTGCCAGACCCG
CGAGGGAGCCTCGGTCCAGTGGTACGTCTTCAAGACGCCCAACACCCTCT
CCTACGAGCAGCTCTACTTCTTCACTTCCTACTTCCGTGACCTGCCCCTG
GCCAACAACGGCCGTATCTCCCGTAATGTCCAGGACGTCTTGGAGGGCAC
CACCATCTACTCCTTCCCTTAAATGAAGATCACCATGTCCTCCGCCGCCT
GCCTGGCCTTGCTGATGGCACCCTTGGCCCTGGTCCGCGCCGGTACTTCC
ATGGAAGACCTTGAGAAGATGGAGTCCTGGAGCTACGTCCCTAACGAGAA
TTCCAACGCATGTGTCGGTGCTGATGCGAAGTCCTGGGGATGCTGCGGAA
AGCCGGAGGACGGCAAGGAGCGTTGCGGCCCCAACAACTGGATCCACATC
AACGAGACCACCACCGTCAGGTGTGCCAACACGCCGGGCAATCAGCAGAG
CCCCATTAACTTCCAGACTGTCGGCAAATTCCGTGACATCGTGTCTTTGA
AGAAGGAGGATGCCGCCATGACCTTCTCGGGCCACAAATGCGAGGCCTTT
GTGGAGTTCAAAGAAGGGACGTGGGAGGTTGTCACCCCCGATGACTGCGG
CTTCAAGATGACAATTGGAGGCGTCGACTACAAGCTCCTGCAGTTCCACT
TCCATAACGCCGAGCACACGGTCAACTATGCCTACATGCCTCTTGAAGTC
CACCTAGTGCACCAGAGCGTCGAGGACAAAGACCAAATCCTCGTCCTGAG
TACCTTTTTCGCCCCAGGCGCGACCTCCGAGTTCTTCGAGAACCTCCAGA
AGGGCCAGGAGAACGCCAACCCCGACAAGCCCGACCTGGCCACCAAAAAC
ATGATCAACGCCTATGATGTCCTCCCCAAAGACATGGCATTCTGGCACTA
CGTCGGATCCCTCACCACCCCTCCCTGCCAGACCCGCGAGGGAGCCTCGG
TCCAGTGGTACGTCTTCAAGACGCCCAACACCCTCTCCTACGAGCAGCTC
TACTTCTTCACTTCCTACTTCCGTGACCTGCCCCTGGCCAACAACGGCCG
TATCTCCCGTAATGTCCAGGACGTCTTGGAGGGCACCACCATCTACTCCT
TCCCTTAAATGAAGATCACCATGTCCTCCGCCGCCTGCCTGGCCTTGCTG
ATGGCACCCTTGGCCCTGGTCCGCGCCGGTACTTCCATGGAAGACCTTGA
GAAGATGGAGTCCTGGAGCTACGTCCCTAACGAGAATTCCAACGCATGTG
TCGGTGCTGATGCGAAGTCCTGGGGATGCTGCGGAAAGCCGGAGGACGGC
AAGGAGCGTTGCGGCCCCAACAACTGGATCCACATCAACGAGACCACCAC
CGTCAGGTGTGCCAACACGCCGGGCAATCAGCAGAGCCCCATTAACTTCC
AGACTGTCGGCAAATTCCGTGACATCGTGTCTTTGAAGAAGGAGGATGCC
GCCATGACCTTCTCGGGCCACAAATGCGAGGCCTTTGTGGAGTTCAAAGA
AGGGACGTGGGAGGTTGTCACCCCCGATGACTGCGGCTTCAAGATGACAA
TTGGAGGCGTCGACTACAAGCTCCTGCAGTTCCACTTCCATAACGCCGAG
CACACGGTCAACTATGCCTACATGCCTCTTGAAGTCCACCTAGTGCACCA
GAGCGTCGAGGACAAAGACCAAATCCTCGTCCTGAGTACCTTTTTCGCCC
CAGGCGCGACCTCCGAGTTCTTCGAGAACCTCCAGAAGGGCCAGGAGAAC
GCCAACCCCGACAAGCCCGACCTGGCCACCAAAAACATGATCAACGCCTA
TGATGTCCTCCCCAAAGACATGGCATTCTGGCACTACGTCGGATCCCTCA
CCACCCCTCCCTGCCAGACCCGCGAGGGAGCCTCGGTCCAGTGGTACGTC
TTCAAGACGCCCAACACCCTCTCCTACGAGCAGCTCTACTTCTTCACTTC
CTACTTCCGTGACCTGCCCCTGGCCAACAACGGCCGTATCTCCCGTAATG
TCCAGGACGTCTTGGAGGGCACCACCATCTACTCCTTCCCTTAA back to top
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