jgi.p|Nanoce1779_2|594422, gene_6278 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594422
Unique Namegene_6278
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_15:211002..213295 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594508
ProteinId594422
Product nameAlpha carbonic anhydrase
Portal idNanoce1779_2
Mutants
The following records are associated with this feature:
TitleMethodAccession dateLast modified date
Insertions for carbonic anhydrase CAH1Homologous Recombination2019-05-102019-05-10
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:211002..213295 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004089carbonate dehydratase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006730one-carbon metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL020ncniL020Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G00630NO20G00630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594422mRNA_6278-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594422mRNA_6278Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|594422

>mRNA_6278-protein ID=mRNA_6278-protein|Name=jgi.p|Nanoce1779_2|594422|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MKITMSSAACLALLMAPLALVRAGTSMEDLEKMESWSYVPNENSNACVGA
DAKSWGCCGKPEDGKERCGPNNWIHINETTTVRCANTPGNQQSPINFQTV
GKFRDIVSLKKEDAAMTFSGHKCEAFVEFKEGTWEVVTPDDCGFKMTIGG
VDYKLLQFHFHNAEHTVNYAYMPLEVHLVHQSVEDKDQILVLSTFFAPGA
TSEFFENLQKGQENANPDKPDLATKNMINAYDVLPKDMAFWHYVGSLTTP
PCQTREGASVQWYVFKTPNTLSYEQLYFFTSYFRDLPLANNGRISRNVQD
VLEGTTIYSFP*
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Synonyms
Publications
YearPublication
2017Gee CW, Niyogi KK. The carbonic anhydrase CAH1 is an essential component of the carbon-concentrating mechanism in. Proceedings of the National Academy of Sciences of the United States of America. 2017 04 25; 114(17):4537-4542.