jgi.p|Nanoce1779_2|671851, mRNA_6234 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671851
Unique Name	mRNA_6234
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2472
Alignment location	scaffold_15:80208..82679 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671937
Track	FilteredModels2
ProteinId	671851

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:80208..82679 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671851	gene_6234	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671851	mRNA_6234-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6234	CDS_6234	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:80208..82679+
coding sequence from alignment at scaffold_15:80208..82679+

mRNA sequence

>mRNA_6234 ID=mRNA_6234|Name=jgi.p|Nanoce1779_2|671851|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp
ACAGGAAAAGTGCTGGACTCATTGAAGACAAGGGTGGCTCATGTTGAAGA
GTTCATTGCCTGATGACTGGGTACACCTCCCCTTTGATACATCAGCCCTC
GGCGTGCGCACAGCTCTTTTGAAGAGTACAATTGAATTCTCACAGCTGCG
CAAAGTCATCAACACTTGTGCAAAGCAAGGCCTGGAATTGCTGTACTGGA
CTCCTGATTCAGATGTTGGGACTGTAATTCATAACCAAGAATGGTTCACA
GGCTATGGCGTGGCCAAGGGAGTCGAGTTCAAGCTGCCGCTGGCAAACCG
TCACAGCGGCTCCACTTCACAGATCCCTTTAGAAATGAGTCCTGATTTCT
TCGTAGAGCCACTAGCTTCCATTGAGGAGGAAGATTTCTACGATCTCGTG
GATTTGGCCCTCATCGCTGGGCATCATTCTCGGTTTCGCCTGGACCCAGC
ACTGACTCACGCCCAATTTAAGAGCCTATACAAGGCATGGTTGCAAAATT
CCGTGACTAGGCAGGTAGCTGACCAGATTTTTGTGGCCCGTCGCAAGGAA
GATGGCAAGGCTACGGGATTCATCACCGTCAAGCTTGCTGTCGACAGAAA
TAGCGCTTCCATAGGCCTTTTGGGTGTCTCACCCTCATGCCAGCGTCAAG
GATTAGGGGCAGCCTTGATTTCCGCGGCTTGCGAATTTACCCAGAGCGCA
GACATCCCGCAAATCACTGTCCGGACGCAGGAAGATAATCATATGGCCAT
AAACTTCTACGGTGCTCAAGGCTTTATGCCCCATGATAACGGCCCGAAAA
CCACTTATCACATCTGGCTCACGCACCGCGTTATAGACCGAGTACAATAT
AATGTCCCTAACCTCACTGGCGATGAAGGAAAGGAAGTGTCGCGCCTCAT
CAATTCTCAAAGACTGGACAGTTTGGGTAGATATACTGTCGCGTGCGAAC
ACTGGCTGGAGACGAATCTAGGATGCTCAAAGGCATTGCTAACCTTGTCT
GCCACCGCTGCCCTGGAGCAAGCAATATTGCTTTGTAAAATTGGCCCTGG
CGATGAGGTCATCATGCCATCCTTCACCTTTGTGTCCACAGCCAATGCTG
TGGCCTTACGCATGGCCACGCCGGTTTTCATAGACGTTGGGGATGACTTG
AACATGGACATCGCTGCAGTATCAGAGGCTGTGACTTCCAAGACGAAAGC
AATTATGGTGGTTCACTACGGGGGAAACGCTTGCGATATGGACAACATCA
TGCACTTGGCAAAGGAAAAGGAATTATATGTCATTGAAGATGCTGCGCAA
GCATTCCTCAGCAAGTACAAGGGCCGTTGCCTTGGTACAATTGGTCACTT
GGGATGTTTGTCATTCCATTACACAAAAAATACGGTGTGCGGAGAAGGTG
GGGCTCTACTCGTGAATGACCCTCGTTTCCATTCCCCAGCAGCAATAATC
CGAGAAAAAGGCACTAATCGTGCAGACTTCATGCTCGGCAGCGTGAGCAA
GTACGAATGGATGTCCTTGGGTTCTTCTTACGTACCGTCGGAATTATGCT
CCGCGTTTCTTCTACCACAGCTCTTGGATGCAAACGAATCCGCTTATCGA
CGGAAGAGAGTCTGCGATGCCTACAGGGTATTATTGGCACCCTTGGCCGC
GCGCGGCTGTTTTCGATTTCTAAAGGTCCTGAGCGACCGAAATGGGGCTG
CTATGCTGGCCGATACATGTGGAAATGGGCACTTGTTTCCCATTATTTTC
CCCTCGACGGACAGTAGGAAGATGGCCCAGACGGCCATGACCACCAAAAA
TGTACAATGCCTGACGCATTTTGTTCCCTTGCACCTTTCCCAAGGTGGCA
TGAAATATGGAAAAGTATGGCCGCATGCCTCTCTTGAAAGTACGATAACT
GCATCGGCTTGTCTATTACGCCTTCCGGTATGGCCTGGAATGCGATTTGG
ACATATCCAGTACGTCGTCCAGGTTCTGTACGAACACTTTGGCGAAGATT
GTCCTTCCGTGACCACCGCTATGCATCTCTTCATGCCCACTACCTAGAAT
GCAACATGTGACGTACGACAACGACTTTTGTGGGGCGGACTCATTATTAG
GGCTTTTTTTGCTATAGATTTATTTGTCCACAAGCTGGCGTTTCAAATAA
AATGAAATTACATAAATGAAATGAAACTATATATATATATGTATATGTAT
GTATATATATATATACACACACATATATAGTAATAGAGCTTTTTGTTTTT
AGATACATGGTCTGTCGTATTCTCAGGGCTTACTCACTTCGCCAACATCA
CCCAAATGCACGTCCACTGATCTACATGTATCTTCGCACTAAGGGTTTGG
AAGGTATCGTAGTATCACACGCAAAATCTACAACTAGGGCGGATGGATGA
TATACAAGTGAGAGATCAGTTGAATGAAAGGTTGTGGAAGAAGTTTAAAA
GAAAAAAATGCCAGGAAGACAC

protein sequence of jgi.p|Nanoce1779_2|671851

>mRNA_6234-protein ID=mRNA_6234-protein|Name=jgi.p|Nanoce1779_2|671851|organism=Nannochloropsis oceanica|type=polypeptide|length=669bp
MLKSSLPDDWVHLPFDTSALGVRTALLKSTIEFSQLRKVINTCAKQGLEL
LYWTPDSDVGTVIHNQEWFTGYGVAKGVEFKLPLANRHSGSTSQIPLEMS
PDFFVEPLASIEEEDFYDLVDLALIAGHHSRFRLDPALTHAQFKSLYKAW
LQNSVTRQVADQIFVARRKEDGKATGFITVKLAVDRNSASIGLLGVSPSC
QRQGLGAALISAACEFTQSADIPQITVRTQEDNHMAINFYGAQGFMPHDN
GPKTTYHIWLTHRVIDRVQYNVPNLTGDEGKEVSRLINSQRLDSLGRYTV
ACEHWLETNLGCSKALLTLSATAALEQAILLCKIGPGDEVIMPSFTFVST
ANAVALRMATPVFIDVGDDLNMDIAAVSEAVTSKTKAIMVVHYGGNACDM
DNIMHLAKEKELYVIEDAAQAFLSKYKGRCLGTIGHLGCLSFHYTKNTVC
GEGGALLVNDPRFHSPAAIIREKGTNRADFMLGSVSKYEWMSLGSSYVPS
ELCSAFLLPQLLDANESAYRRKRVCDAYRVLLAPLAARGCFRFLKVLSDR
NGAAMLADTCGNGHLFPIIFPSTDSRKMAQTAMTTKNVQCLTHFVPLHLS
QGGMKYGKVWPHASLESTITASACLLRLPVWPGMRFGHIQYVVQVLYEHF
GEDCPSVTTAMHLFMPTT*

mRNA from alignment at scaffold_15:80208..82679+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6234 ID=mRNA_6234|Name=jgi.p|Nanoce1779_2|671851|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at scaffold_15:80208..82679+ (Nannochloropsis oceanica)
ACAGGAAAAGTGCTGGACTCATTGAAGACAAGGGTGGCTCATGTTGAAGA
GTTCATTGCCTGATGACTGGGTACACCTCCCCTTTGATACATCAGCCCTC
GGCGTGCGCACAGCTCTTTTGAAGAGTACAATTGAATTCTCACAGCTGCG
CAAAGTCATCAACACTTGTGCAAAGCAAGGCCTGGAATTGCTGTACTGGA
CTCCTGATTCAGATGTTGGGACTGTAATTCATAACCAAGAATGGTTCACA
GGCTATGGCGTGGCCAAGGGAGTCGAGTTCAAGCTGCCGCTGGCAAACCG
TCACAGCGGCTCCACTTCACAGATCCCTTTAGAAATGAGTCCTGATTTCT
TCGTAGAGCCACTAGCTTCCATTGAGGAGGAAGATTTCTACGATCTCGTG
GATTTGGCCCTCATCGCTGGGCATCATTCTCGGTTTCGCCTGGACCCAGC
ACTGACTCACGCCCAATTTAAGAGCCTATACAAGGCATGGTTGCAAAATT
CCGTGACTAGGCAGGTAGCTGACCAGATTTTTGTGGCCCGTCGCAAGGAA
GATGGCAAGGCTACGGGATTCATCACCGTCAAGCTTGCTGTCGACAGAAA
TAGCGCTTCCATAGGCCTTTTGGGTGTCTCACCCTCATGCCAGCGTCAAG
GATTAGGGGCAGCCTTGATTTCCGCGGCTTGCGAATTTACCCAGAGCGCA
GACATCCCGCAAATCACTGTCCGGACGCAGGAAGATAATCATATGGCCAT
AAACTTCTACGGTGCTCAAGGCTTTATGCCCCATGATAACGGCCCGAAAA
CCACTTATCACATCTGGCTCACGCACCGCGTTATAGACCGAGTACAATAT
AATGTCCCTAACCTCACTGGCGATGAAGGAAAGGAAGTGTCGCGCCTCAT
CAATTCTCAAAGACTGGACAGTTTGGGTAGATATACTGTCGCGTGCGAAC
ACTGGCTGGAGACGAATCTAGGATGCTCAAAGGCATTGCTAACCTTGTCT
GCCACCGCTGCCCTGGAGCAAGCAATATTGCTTTGTAAAATTGGCCCTGG
CGATGAGGTCATCATGCCATCCTTCACCTTTGTGTCCACAGCCAATGCTG
TGGCCTTACGCATGGCCACGCCGGTTTTCATAGACGTTGGGGATGACTTG
AACATGGACATCGCTGCAGTATCAGAGGCTGTGACTTCCAAGACGAAAGC
AATTATGGTGGTTCACTACGGGGGAAACGCTTGCGATATGGACAACATCA
TGCACTTGGCAAAGGAAAAGGAATTATATGTCATTGAAGATGCTGCGCAA
GCATTCCTCAGCAAGTACAAGGGCCGTTGCCTTGGTACAATTGGTCACTT
GGGATGTTTGTCATTCCATTACACAAAAAATACGGTGTGCGGAGAAGGTG
GGGCTCTACTCGTGAATGACCCTCGTTTCCATTCCCCAGCAGCAATAATC
CGAGAAAAAGGCACTAATCGTGCAGACTTCATGCTCGGCAGCGTGAGCAA
GTACGAATGGATGTCCTTGGGTTCTTCTTACGTACCGTCGGAATTATGCT
CCGCGTTTCTTCTACCACAGCTCTTGGATGCAAACGAATCCGCTTATCGA
CGGAAGAGAGTCTGCGATGCCTACAGGGTATTATTGGCACCCTTGGCCGC
GCGCGGCTGTTTTCGATTTCTAAAGGTCCTGAGCGACCGAAATGGGGCTG
CTATGCTGGCCGATACATGTGGAAATGGGCACTTGTTTCCCATTATTTTC
CCCTCGACGGACAGTAGGAAGATGGCCCAGACGGCCATGACCACCAAAAA
TGTACAATGCCTGACGCATTTTGTTCCCTTGCACCTTTCCCAAGGTGGCA
TGAAATATGGAAAAGTATGGCCGCATGCCTCTCTTGAAAGTACGATAACT
GCATCGGCTTGTCTATTACGCCTTCCGGTATGGCCTGGAATGCGATTTGG
ACATATCCAGTACGTCGTCCAGGTTCTGTACGAACACTTTGGCGAAGATT
GTCCTTCCGTGACCACCGCTATGCATCTCTTCATGCCCACTACCTAGAAT
GCAACATGTGACGTACGACAACGACTTTTGTGGGGCGGACTCATTATTAG
GGCTTTTTTTGCTATAGATTTATTTGTCCACAAGCTGGCGTTTCAAATAA
AATGAAATTACATAAATGAAATGAAACTATATATATATATGTATATGTAT
GTATATATATATATACACACACATATATAGTAATAGAGCTTTTTGTTTTT
AGATACATGGTCTGTCGTATTCTCAGGGCTTACTCACTTCGCCAACATCA
CCCAAATGCACGTCCACTGATCTACATGTATCTTCGCACTAAGGGTTTGG
AAGGTATCGTAGTATCACACGCAAAATCTACAACTAGGGCGGATGGATGA
TATACAAGTGAGAGATCAGTTGAATGAAAGGTTGTGGAAGAAGTTTAAAA
GAAAAAAATGCCAGGAAGACAC

Coding sequence (CDS) from alignment at scaffold_15:80208..82679+

>mRNA_6234 ID=mRNA_6234|Name=jgi.p|Nanoce1779_2|671851|organism=Nannochloropsis oceanica|type=CDS|length=2007bp|location=Sequence derived from alignment at scaffold_15:80208..82679+ (Nannochloropsis oceanica)
ATGTTGAAGAGTTCATTGCCTGATGACTGGGTACACCTCCCCTTTGATAC
ATCAGCCCTCGGCGTGCGCACAGCTCTTTTGAAGAGTACAATTGAATTCT
CACAGCTGCGCAAAGTCATCAACACTTGTGCAAAGCAAGGCCTGGAATTG
CTGTACTGGACTCCTGATTCAGATGTTGGGACTGTAATTCATAACCAAGA
ATGGTTCACAGGCTATGGCGTGGCCAAGGGAGTCGAGTTCAAGCTGCCGC
TGGCAAACCGTCACAGCGGCTCCACTTCACAGATCCCTTTAGAAATGAGT
CCTGATTTCTTCGTAGAGCCACTAGCTTCCATTGAGGAGGAAGATTTCTA
CGATCTCGTGGATTTGGCCCTCATCGCTGGGCATCATTCTCGGTTTCGCC
TGGACCCAGCACTGACTCACGCCCAATTTAAGAGCCTATACAAGGCATGG
TTGCAAAATTCCGTGACTAGGCAGGTAGCTGACCAGATTTTTGTGGCCCG
TCGCAAGGAAGATGGCAAGGCTACGGGATTCATCACCGTCAAGCTTGCTG
TCGACAGAAATAGCGCTTCCATAGGCCTTTTGGGTGTCTCACCCTCATGC
CAGCGTCAAGGATTAGGGGCAGCCTTGATTTCCGCGGCTTGCGAATTTAC
CCAGAGCGCAGACATCCCGCAAATCACTGTCCGGACGCAGGAAGATAATC
ATATGGCCATAAACTTCTACGGTGCTCAAGGCTTTATGCCCCATGATAAC
GGCCCGAAAACCACTTATCACATCTGGCTCACGCACCGCGTTATAGACCG
AGTACAATATAATGTCCCTAACCTCACTGGCGATGAAGGAAAGGAAGTGT
CGCGCCTCATCAATTCTCAAAGACTGGACAGTTTGGGTAGATATACTGTC
GCGTGCGAACACTGGCTGGAGACGAATCTAGGATGCTCAAAGGCATTGCT
AACCTTGTCTGCCACCGCTGCCCTGGAGCAAGCAATATTGCTTTGTAAAA
TTGGCCCTGGCGATGAGGTCATCATGCCATCCTTCACCTTTGTGTCCACA
GCCAATGCTGTGGCCTTACGCATGGCCACGCCGGTTTTCATAGACGTTGG
GGATGACTTGAACATGGACATCGCTGCAGTATCAGAGGCTGTGACTTCCA
AGACGAAAGCAATTATGGTGGTTCACTACGGGGGAAACGCTTGCGATATG
GACAACATCATGCACTTGGCAAAGGAAAAGGAATTATATGTCATTGAAGA
TGCTGCGCAAGCATTCCTCAGCAAGTACAAGGGCCGTTGCCTTGGTACAA
TTGGTCACTTGGGATGTTTGTCATTCCATTACACAAAAAATACGGTGTGC
GGAGAAGGTGGGGCTCTACTCGTGAATGACCCTCGTTTCCATTCCCCAGC
AGCAATAATCCGAGAAAAAGGCACTAATCGTGCAGACTTCATGCTCGGCA
GCGTGAGCAAGTACGAATGGATGTCCTTGGGTTCTTCTTACGTACCGTCG
GAATTATGCTCCGCGTTTCTTCTACCACAGCTCTTGGATGCAAACGAATC
CGCTTATCGACGGAAGAGAGTCTGCGATGCCTACAGGGTATTATTGGCAC
CCTTGGCCGCGCGCGGCTGTTTTCGATTTCTAAAGGTCCTGAGCGACCGA
AATGGGGCTGCTATGCTGGCCGATACATGTGGAAATGGGCACTTGTTTCC
CATTATTTTCCCCTCGACGGACAGTAGGAAGATGGCCCAGACGGCCATGA
CCACCAAAAATGTACAATGCCTGACGCATTTTGTTCCCTTGCACCTTTCC
CAAGGTGGCATGAAATATGGAAAAGTATGGCCGCATGCCTCTCTTGAAAG
TACGATAACTGCATCGGCTTGTCTATTACGCCTTCCGGTATGGCCTGGAA
TGCGATTTGGACATATCCAGTACGTCGTCCAGGTTCTGTACGAACACTTT
GGCGAAGATTGTCCTTCCGTGACCACCGCTATGCATCTCTTCATGCCCAC
TACCTAG

Synonyms

Publications