jgi.p|Nanoce1779_2|593213, mRNA_5944 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593213
Unique Name	mRNA_5944
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1913
Alignment location	scaffold_14:133774..135882 -

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Properties


Property Name	Value
TranscriptId	593299
Track	FilteredModels2
ProteinId	593213

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:133774..135882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593213	gene_5944	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593213	mRNA_5944-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5944	CDS_5944	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:133774..135882-
coding sequence from alignment at scaffold_14:133774..135882-

mRNA sequence

>mRNA_5944 ID=mRNA_5944|Name=jgi.p|Nanoce1779_2|593213|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
CCAAAGCCTTTTGCCGTGGCATGCCTTGTCCATTCTTATGCATGTTTTGG
ACGGGCTTGATGCAGCCACCGCTGCTGCAGGATCTCGAGATAACTCGTCT
GTCCCTATTTGAATTCTTCCTTGCTGCCTTCGAGAGGTTTGGACATCGAC
CACAAACCCGAGACATGAAGCTAGCCCCCCCATTTTAAAATCCTCCTTTC
TTGCATTCATCACGCCCCACCTCCAGGACACACACGCCGGAACAATCCAT
GACCAGGAAAAGCATAAGTAGCGGCTACAAACTTCATCCGTTATCTCGGT
CGTGCCTTGCCGCACATGGCGCACCTCTGCGTAAACCATGCGGCCCTCCC
TCGAATTCAAAAACTCACCATCCTCCCTTCCCCCTTTTCACTCTCTGCCA
ACCAAATCAACCCCCAAACTCACTTTACAGCAAAGCAACAATGAGCAACT
CCTCTACCCCTTTGGTGACAGGCAAGAAAGTCCTGGTGGCCGGCGGCGGC
GGCTTCATCGGCTCCCACCTGGCCCGTCGTCTCAAGAAGGACGGGAACTA
TGTCGTGGTGGCCGACTGGAAGCGCAACGAATTCATGACAGAGCCCGAGT
TCTGCGATGAGTTTCTCCAAGTCGATTTGCGGGAACTTGACAACTGCATC
AAGGCTTCCAAGGGCTGCCACCACGTGTACAATTTAGCTGCGGAGATGGG
CGGAATGGGCTTCATCGAGTCCAATCAGTCCGTGCTCATGTGGAACAACA
CCATGGTCTCCTCCAATGTCCTTGAGGCCGCGCGTCGTAATGGCGCTGAG
CGTTATTTCTACTCCTCGACGGCTTGTGTTTACAACGAGGATCTGCAGCT
TGACCCGTCCAATCCCGGGTTGAAGGAGGCGGATGCCTGGCCCGCCAAGC
CGCAAGAAATGTACGGGCTTGAAAAGCTTTACCATGAAGAAATGGCACTG
GCGTACTCCCGGGACTTCCCCATGGTGTCGCGCATTGCTCGATTCCACAA
TGTCTACGGCCCATTCGGCACCTGGAAGGGCGGTCGTGAAAAGGCCCCGG
CTGCCTTCTGCCGCAAGGCCGTGGGGAGCACGGAGCACTTCGAAGTGTGG
GGAGATGGGGAGCAGACGCGATCGTTCATGTATGTCGATGATTGTGTGGA
GGGAGTGTTGCGCATCATGATGAGTGAGACGGCGGTCAAGCCCTTGAACC
TCGGCACGGAAGAGATGGTGTCGATGAACAAATTTGCTGAGATTGCCATG
AGCTTCGAAAACAAGTATTTGCCCATCAAGCACATCCCGGGCCCGCAAGG
CGTGCGTGGACGTAACTCTGACAATACTCTCATTCGGGAGGAGCTTGGCT
GGGAGCCTCTCATCTCAATTCAGGAAGGCCTTCGCGAAACCTACTTTTGG
ATCAAGGGACAGATTGAGAAGGAGCGCGCGGCCGGGATAGTGTTTGACTA
CTCTTCCTCTAAGGTGGTTGTCCAGACGACGGATTCCCTGGATGCGCTGG
GCGGGAAAGAGAAGGGGTTGGTGAGCAGCATTCCGGAATCGGACTTGGCC
AGCAATAGCAATGCCGGCATCCAGGTGATTGCTTAGAAATTGCAAGGCGC
GGCATGTAGAACGAGGGAAAGGTAGGGAGGGGGGGAAGAATGGGATAAAG
TAGTATGGCTAGCCGGCGAGAGATGCATGTTGAGATTGACGGAGGCCTCA
GTCTCGATTCCAAGAAAATGAAGGCAGAGGGGTAAGATTCAGATTGTATG
TTGCATGTTCACACGCCTACGGTATGACGAGAGGAAGTCAAGAAGAGCCA
AAAGCAATGTGACAATGCCGAGTATCACTCTGTGGCCATGGGTCAGGAAG
GTACCTGTCCGTTAATGAATGTCAACAATCGAAAGTATGAAAGGGTAGTG
GCATGCATGAAAC

protein sequence of jgi.p|Nanoce1779_2|593213

>mRNA_5944-protein ID=mRNA_5944-protein|Name=jgi.p|Nanoce1779_2|593213|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MTRKSISSGYKLHPLSRSCLAAHGAPLRKPCGPPSNSKTHHPPFPLFTLC
QPNQPPNSLYSKATMSNSSTPLVTGKKVLVAGGGGFIGSHLARRLKKDGN
YVVVADWKRNEFMTEPEFCDEFLQVDLRELDNCIKASKGCHHVYNLAAEM
GGMGFIESNQSVLMWNNTMVSSNVLEAARRNGAERYFYSSTACVYNEDLQ
LDPSNPGLKEADAWPAKPQEMYGLEKLYHEEMALAYSRDFPMVSRIARFH
NVYGPFGTWKGGREKAPAAFCRKAVGSTEHFEVWGDGEQTRSFMYVDDCV
EGVLRIMMSETAVKPLNLGTEEMVSMNKFAEIAMSFENKYLPIKHIPGPQ
GVRGRNSDNTLIREELGWEPLISIQEGLRETYFWIKGQIEKERAAGIVFD
YSSSKVVVQTTDSLDALGGKEKGLVSSIPESDLASNSNAGIQVIA*

mRNA from alignment at scaffold_14:133774..135882-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5944 ID=mRNA_5944|Name=jgi.p|Nanoce1779_2|593213|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at scaffold_14:133774..135882- (Nannochloropsis oceanica)
CCAAAGCCTTTTGCCGTGGCATGCCTTGTCCATTCTTATGCATGTTTTGG
ACGGGCTTGATGCAGCCACCGCTGCTGCAGGATCTCGAGATAACTCGTCT
GTCCCTATTTGAATTCTTCCTTGCTGCCTTCGAGAGGTTTGGACATCGAC
CACAAACCCGAGACATGAAGCTAGCCCCCCCATTTTAAAATCCTCCTTTC
TTGCATTCATCACGCCCCACCTCCAGGACACACACGCCGGAACAATCCAT
GACCAGGAAAAGCATAAGTAGCGGCTACAAACTTCATCCGTTATCTCGGT
CGTGCCTTGCCGCACATGGCGCACCTCTGCGTAAACCATGCGGCCCTCCC
TCGAATTCAAAAACTCACCATCCTCCCTTCCCCCTTTTCACTCTCTGCCA
ACCAAATCAACCCCCAAACTCACTTTACAGCAAAGCAACAATGAGCAACT
CCTCTACCCCTTTGGTGACAGGCAAGAAAGTCCTGGTGGCCGGCGGCGGC
GGCTTCATCGGCTCCCACCTGGCCCGTCGTCTCAAGAAGGACGGGAACTA
TGTCGTGGTGGCCGACTGGAAGCGCAACGAATTCATGACAGAGCCCGAGT
TCTGCGATGAGTTTCTCCAAGTCGATTTGCGGGAACTTGACAACTGCATC
AAGGCTTCCAAGGGCTGCCACCACGTGTACAATTTAGCTGCGGAGATGGG
CGGAATGGGCTTCATCGAGTCCAATCAGTCCGTGCTCATGTGGAACAACA
CCATGGTCTCCTCCAATGTCCTTGAGGCCGCGCGTCGTAATGGCGCTGAG
CGTTATTTCTACTCCTCGACGGCTTGTGTTTACAACGAGGATCTGCAGCT
TGACCCGTCCAATCCCGGGTTGAAGGAGGCGGATGCCTGGCCCGCCAAGC
CGCAAGAAATGTACGGGCTTGAAAAGCTTTACCATGAAGAAATGGCACTG
GCGTACTCCCGGGACTTCCCCATGGTGTCGCGCATTGCTCGGTAAGTTTG
ACACAGGAGAGGAGGGGAAAGAGGGGATGACGGAATGTGTATGGTCCTTT
CTAGTCAAAGAGACTTGCCCGGAAGCATCATCACTGTCAATTGTGTTCAT
CATTGACATTTTCGTAGGATGCTTCGTCTTGTCAATATTTCGCGCAGCTT
TTCACCATCCCTTCCTCCCATTCTCCCCCCCTCTCAGATTCCACAATGTC
TACGGCCCATTCGGCACCTGGAAGGGCGGTCGTGAAAAGGCCCCGGCTGC
CTTCTGCCGCAAGGCCGTGGGGAGCACGGAGCACTTCGAAGTGTGGGGAG
ATGGGGAGCAGACGCGATCGTTCATGTATGTCGATGATTGTGTGGAGGGA
GTGTTGCGCATCATGATGAGTGAGACGGCGGTCAAGCCCTTGAACCTCGG
CACGGAAGAGATGGTGTCGATGAACAAATTTGCTGAGATTGCCATGAGCT
TCGAAAACAAGTATTTGCCCATCAAGCACATCCCGGGCCCGCAAGGCGTG
CGTGGACGTAACTCTGACAATACTCTCATTCGGGAGGAGCTTGGCTGGGA
GCCTCTCATCTCAATTCAGGAAGGCCTTCGCGAAACCTACTTTTGGATCA
AGGGACAGATTGAGAAGGAGCGCGCGGCCGGGATAGTGTTTGACTACTCT
TCCTCTAAGGTGGTTGTCCAGACGACGGATTCCCTGGATGCGCTGGGCGG
GAAAGAGAAGGGGTTGGTGAGCAGCATTCCGGAATCGGACTTGGCCAGCA
ATAGCAATGCCGGCATCCAGGTGATTGCTTAGAAATTGCAAGGCGCGGCA
TGTAGAACGAGGGAAAGGTAGGGAGGGGGGGAAGAATGGGATAAAGTAGT
ATGGCTAGCCGGCGAGAGATGCATGTTGAGATTGACGGAGGCCTCAGTCT
CGATTCCAAGAAAATGAAGGCAGAGGGGTAAGATTCAGATTGTATGTTGC
ATGTTCACACGCCTACGGTATGACGAGAGGAAGTCAAGAAGAGCCAAAAG
CAATGTGACAATGCCGAGTATCACTCTGTGGCCATGGGTCAGGAAGGTAC
CTGTCCGTTAATGAATGTCAACAATCGAAAGTATGAAAGGGTAGTGGCAT
GCATGAAAC

Coding sequence (CDS) from alignment at scaffold_14:133774..135882-

>mRNA_5944 ID=mRNA_5944|Name=jgi.p|Nanoce1779_2|593213|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_14:133774..135882- (Nannochloropsis oceanica)
ATTCCACAATGTCTACGGCCCATTCGGCACCTGGAAGGGCGGTCGTGAAA
AGGCCCCGGCTGCCTTCTGCCGCAAGGCCGTGGGGAGCACGGAGCACTTC
GAAGTGTGGGGAGATGGGGAGCAGACGCGATCGTTCATGTATGTCGATGA
TTGTGTGGAGGGAGTGTTGCGCATCATGATGAGTGAGACGGCGGTCAAGC
CCTTGAACCTCGGCACGGAAGAGATGGTGTCGATGAACAAATTTGCTGAG
ATTGCCATGAGCTTCGAAAACAAGTATTTGCCCATCAAGCACATCCCGGG
CCCGCAAGGCGTGCGTGGACGTAACTCTGACAATACTCTCATTCGGGAGG
AGCTTGGCTGGGAGCCTCTCATCTCAATTCAGGAAGGCCTTCGCGAAACC
TACTTTTGGATCAAGGGACAGATTGAGAAGGAGCGCGCGGCCGGGATAGT
GTTTGACTACTCTTCCTCTAAGGTGGTTGTCCAGACGACGGATTCCCTGG
ATGCGCTGGGCGGGAAAGAGAAGGGGTTGGTGAGCAGCATTCCGGAATCG
GACTTGGCCAGCAATAGCAATGCCGGCATCCAGGTGATTGCTTAGATGAC
CAGGAAAAGCATAAGTAGCGGCTACAAACTTCATCCGTTATCTCGGTCGT
GCCTTGCCGCACATGGCGCACCTCTGCGTAAACCATGCGGCCCTCCCTCG
AATTCAAAAACTCACCATCCTCCCTTCCCCCTTTTCACTCTCTGCCAACC
AAATCAACCCCCAAACTCACTTTACAGCAAAGCAACAATGAGCAACTCCT
CTACCCCTTTGGTGACAGGCAAGAAAGTCCTGGTGGCCGGCGGCGGCGGC
TTCATCGGCTCCCACCTGGCCCGTCGTCTCAAGAAGGACGGGAACTATGT
CGTGGTGGCCGACTGGAAGCGCAACGAATTCATGACAGAGCCCGAGTTCT
GCGATGAGTTTCTCCAAGTCGATTTGCGGGAACTTGACAACTGCATCAAG
GCTTCCAAGGGCTGCCACCACGTGTACAATTTAGCTGCGGAGATGGGCGG
AATGGGCTTCATCGAGTCCAATCAGTCCGTGCTCATGTGGAACAACACCA
TGGTCTCCTCCAATGTCCTTGAGGCCGCGCGTCGTAATGGCGCTGAGCGT
TATTTCTACTCCTCGACGGCTTGTGTTTACAACGAGGATCTGCAGCTTGA
CCCGTCCAATCCCGGGTTGAAGGAGGCGGATGCCTGGCCCGCCAAGCCGC
AAGAAATGTACGGGCTTGAAAAGCTTTACCATGAAGAAATGGCACTGGCG
TACTCCCGGGACTTCCCCATGGTGTCGCGCATTGCTCGATTCCACAATGT
CTACGGCCCATTCGGCACCTGGAAGGGCGGTCGTGAAAAGGCCCCGGCTG
CCTTCTGCCGCAAGGCCGTGGGGAGCACGGAGCACTTCGAAGTGTGGGGA
GATGGGGAGCAGACGCGATCGTTCATGTATGTCGATGATTGTGTGGAGGG
AGTGTTGCGCATCATGATGAGTGAGACGGCGGTCAAGCCCTTGAACCTCG
GCACGGAAGAGATGGTGTCGATGAACAAATTTGCTGAGATTGCCATGAGC
TTCGAAAACAAGTATTTGCCCATCAAGCACATCCCGGGCCCGCAAGGCGT
GCGTGGACGTAACTCTGACAATACTCTCATTCGGGAGGAGCTTGGCTGGG
AGCCTCTCATCTCAATTCAGGAAGGCCTTCGCGAAACCTACTTTTGGATC
AAGGGACAGATTGAGAAGGAGCGCGCGGCCGGGATAGTGTTTGACTACTC
TTCCTCTAAGGTGGTTGTCCAGACGACGGATTCCCTGGATGCGCTGGGCG
GGAAAGAGAAGGGGTTGGTGAGCAGCATTCCGGAATCGGACTTGGCCAGC
AATAGCAATGCCGGCATCCAGGTGATTGCTTAGATGACCAGGAAAAGCAT
AAGTAGCGGCTACAAACTTCATCCGTTATCTCGGTCGTGCCTTGCCGCAC
ATGGCGCACCTCTGCGTAAACCATGCGGCCCTCCCTCGAATTCAAAAACT
CACCATCCTCCCTTCCCCCTTTTCACTCTCTGCCAACCAAATCAACCCCC
AAACTCACTTTACAGCAAAGCAACAATGAGCAACTCCTCTACCCCTTTGG
TGACAGGCAAGAAAGTCCTGGTGGCCGGCGGCGGCGGCTTCATCGGCTCC
CACCTGGCCCGTCGTCTCAAGAAGGACGGGAACTATGTCGTGGTGGCCGA
CTGGAAGCGCAACGAATTCATGACAGAGCCCGAGTTCTGCGATGAGTTTC
TCCAAGTCGATTTGCGGGAACTTGACAACTGCATCAAGGCTTCCAAGGGC
TGCCACCACGTGTACAATTTAGCTGCGGAGATGGGCGGAATGGGCTTCAT
CGAGTCCAATCAGTCCGTGCTCATGTGGAACAACACCATGGTCTCCTCCA
ATGTCCTTGAGGCCGCGCGTCGTAATGGCGCTGAGCGTTATTTCTACTCC
TCGACGGCTTGTGTTTACAACGAGGATCTGCAGCTTGACCCGTCCAATCC
CGGGTTGAAGGAGGCGGATGCCTGGCCCGCCAAGCCGCAAGAAATGTACG
GGCTTGAAAAGCTTTACCATGAAGAAATGGCACTGGCGTACTCCCGGGAC
TTCCCCATGGTGTCGCGCATTGCTCG

Synonyms

Publications