jgi.p|Nanoce1779_2|41513, mRNA_5902 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|41513
Unique Name	mRNA_5902
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	667
Alignment location	scaffold_11:900665..902934 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	41599
Track	FilteredModels2
ProteinId	41513

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:900665..902934 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41513	gene_5902	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41513	mRNA_5902-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5902	CDS_5902	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:900665..902934-
coding sequence from alignment at scaffold_11:900665..902934-

mRNA sequence

>mRNA_5902 ID=mRNA_5902|Name=jgi.p|Nanoce1779_2|41513|organism=Nannochloropsis oceanica|type=mRNA|length=667bp
GGTGGCTGGGGTCTATCTTCGGAAGGAAGGATAAGCAGCAGGCGGCGACC
GTAACCCAAGGTTGCGCGAGCGTCGAGATGTGCGAAGCGGTGCTGCTGGC
GGGCAGCAACAGCGAAGGGAAGGAGCAGGAGGCTGTCGATGATAAGTGCC
GACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCAT
CATTCCCGTCATCGACATCAGACTTGAAGTCGATGCAAAGGCGGGCACCG
CAATTATCCACGCGGTATCGGGCAAGATCAAACGGAGCGACCAGCCAGTG
AACCTCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGGCTCGGGTCA
CTTCGATGAAATGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGC
AACAGATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAG
GTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGATGATGAA
TCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCCG
AGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGAG
GTGGTGGTATAAGGAGATGCACGGAAAGGAGGGGGACGAGAGGAGGGAGA
GAGAAGGGAATGTGGAT

protein sequence of jgi.p|Nanoce1779_2|41513

>mRNA_5902-protein ID=mRNA_5902-protein|Name=jgi.p|Nanoce1779_2|41513|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MISADTFRCEMAPIQFFSASIIPVIDIRLEVDAKAGTAIIHAVSGKIKRS
DQPVNLEEARANGYVHTGSGHFDEMSFKMNTINNVRWQQIDEKTIKISSE
LQMEVSMDKPGWLLVPSSMMNRVGSLILQRVVKKTLPEFLQRIQNGYALW
AGGEVVV*

mRNA from alignment at scaffold_11:900665..902934-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5902 ID=mRNA_5902|Name=jgi.p|Nanoce1779_2|41513|organism=Nannochloropsis oceanica|type=mRNA|length=2270bp|location=Sequence derived from alignment at scaffold_11:900665..902934- (Nannochloropsis oceanica)
GGTGGCTGGGGTCTATCTTCGGAAGGAAGGATAAGCAGCAGGTATGGTGG
GAAGGAAGGATGAGAGGGTGTGTGTCGGCAGCTTCGGGGAGCGAGCTTGG
CCGGAAAGCTAGAAGGGAGGGAGGAAGGACCGTAAAGTAATATGAATATT
TATAAATGTATGTGGCCCACCTGTCATCCAACGACATGCCATGCCACTTC
TCATCCAAAACGATGCATGCTACAGGCGGCGACCGTAACCCAAGGTTGCG
CGAGCGTCGAGATGTGCGAAGCGGTGCTGCTGGCGGGCAGCAACAGCGAA
GGGAAGGAGCAGGAGGCTGTCGATGGTAAGGGACGAGGAAGGGGATGAGG
AGGGAAGGAAGGGGGCGAGAGGAACAGACGGAAGGAGGGCAGGAAGGGCG
TATGAAAGAAGACTCAGAATGTCACCGTCAACGTGGATAAAGATGACGTG
AAGGGAAAGTAGCTAGTGACGGAGGGGGGGGAAAGGAGGGAGGGAGGGAG
GGGTCAAAACTTCGACCCCGGCGATGGACACAGTCTCACTCTTCCTTTCT
CGTCCCTGCCCTCCCCCCTTTCTTTCCGACCCAGCGGAAAGCAAGCTCTT
GTCCCCGTCTGTGCGCACCGTTTTTAAGGCGAAGCAGACGCAGTCAATCC
AAGTCCAGGGTAAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGAGGTTGACGAGATGTGGGATTGATGGAATTCTGCATTTTCGAGCGTT
CTTTCAGTCTGGATTCCCTGCTTGTGTTTCACGAACCGACCTTCCCTCCC
TCCCTCCCTCCCCCCCCTCCCCCCTTCCCTCAGTCCATGGAAGCAAGAGG
GCCCTCCATGACTACTTCCTCTCTCTCGACGCCCGACCCCATATCCTCAA
TGCCGACAATTTCGAGCAGGTACATACCGTCGTGCCCTCCCTCCCTCCCT
CCCTCCCCCTCTCCCACCCTAGATGGCTGTTGTGCTCTCTAACTTGACCA
CTCACCCCCCCCCCCTCCCCCGCAGATAAGTGCCGACACCTTTCGGTGCG
AAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGAC
ATCAGGCAAGTCTTCGTCCCTCCCTCCCTCCCTCTCTCCCTGTTTTCCCC
CCACTATCATGGCTTGCTCACCTCCCGCCCTTCTTCCCTCCCTCCCTCCT
CTCTTAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGCG
GTATCGGGCAAGGTAACACCCTGTCTCCCTCCCTTCTTCCCTCCCTCTCT
CTCTCCTTTCCTCTCTCCCTCCCTTCCCCCACTTCATGCAGTATGCTCAT
CCTTCCTTTTTCTCCCTCCCTCCATCCCTCCCTCCCTCCTTTTTCTCTCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCAGATCAAACGGAGCGACCAGCCA
GTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGGTGCCCT
CCCTTTCTCTCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTTTTCT
TGTCCAGCAACTCACCCCTCGTTCCCCATCCCTCCCTTCTTTAGTCCCTG
TTCTAGACCCACCTACTTATCCCTCCCTCCCTCCCTCCCTCCCTCTCTTT
CTCGACAGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCA
TCAATAACGTCCGCTGGCAACAGGTGAGTGCCCTCCCACCCGCCCTCCCT
CCCTCCTTCCCTTCCTCCCTCCCTCTCTCCTTCCCTCTCCGATCTTCTCG
CTCCGCCTGAAGGGTCTCACCTCATCCTCCCTCCCTCCCTCTTTCCTTCC
CTCCCTCCCTCCTCCCTCCCGTAGATCGACGAGAAGACGATCAAGATCAG
CTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGG
TACCGTCCTCGATGGTAGGGAGGAAAGGAGGGAGGGAGAGATGGAGGGAA
AGAGAGGAAGGTATTCTTGTCTCCTCTTTCGCGTCGGGCACCATGACACA
TCCACCAACAAACATTCTTCTTCCCTCCCTTCCTCTCTCCCTGTGCAGAT
GAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTAC
CCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGA
GAGGTGGTGGTATAAGGAGATGCACGGAAAGGAGGGGGACGAGAGGAGGG
AGAGAGAAGGGAATGTGGAT

Coding sequence (CDS) from alignment at scaffold_11:900665..902934-

>mRNA_5902 ID=mRNA_5902|Name=jgi.p|Nanoce1779_2|41513|organism=Nannochloropsis oceanica|type=CDS|length=3318bp|location=Sequence derived from alignment at scaffold_11:900665..902934- (Nannochloropsis oceanica)
ATGAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTT
ACCCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAG
GAGAGGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAG
CTGCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTC
CTCGATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCAT
CAATAACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACC
TCGAAGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATG
CAAAGGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCC
GACACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCAT
CATTCCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTT
GCAGCGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAA
ATGGCTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAG
AAGACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAA
GCCCGGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGA
AATGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCA
AACGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTAC
GTACATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCAC
GCGGTATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCC
AATACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGAT
GAATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTAC
CCGAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGA
GAGGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCT
GCAGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCT
CGATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCA
ATAACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTC
GAAGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCA
AAGGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGA
CACCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCA
TTCCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTTGC
AGCGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAAT
GGCTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAGAA
GACGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGC
CCGGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGAAA
TGTCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCAAA
CGGAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGT
ACATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGC
GGTATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCCAA
TACAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGATGA
ATCGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCC
GAGTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGA
GGTGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGC
AGATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCG
ATGGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCAAT
AACGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTCGA
AGAAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCAAA
GGCGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGACA
CCTTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATT
CCCGTCATCGACATCAGATGATGAATCGCGTGGGCTCTCTCATTTTGCAG
CGAGTCGTTAAAAAGACGTTACCCGAGTTCTTGCAACGGATCCAAAATGG
CTATGCACTGTGGGCAGGAGGAGAGGTGGTGGTATAAATCGACGAGAAGA
CGATCAAGATCAGCTCGGAGCTGCAGATGGAGGTCAGCATGGACAAGCCC
GGGTGGCTTTTGGTACCGTCCTCGATGGCTCGGGTCACTTCGATGAAATG
TCCTTCAAGATGAACACCATCAATAACGTCCGCTGGCAACAGATCAAACG
GAGCGACCAGCCAGTGAACCTCGAAGAAGCGCGTGCAAATGGCTACGTAC
ATACAGACTTGAAGTCGATGCAAAGGCGGGCACCGCAATTATCCACGCGG
TATCGGGCAAGATAAGTGCCGACACCTTTCGGTGCGAAATGGCGCCAATA
CAATTCTTTTCCGCCTCCATCATTCCCGTCATCGACATCAGATGATGAAT
CGCGTGGGCTCTCTCATTTTGCAGCGAGTCGTTAAAAAGACGTTACCCGA
GTTCTTGCAACGGATCCAAAATGGCTATGCACTGTGGGCAGGAGGAGAGG
TGGTGGTATAAATCGACGAGAAGACGATCAAGATCAGCTCGGAGCTGCAG
ATGGAGGTCAGCATGGACAAGCCCGGGTGGCTTTTGGTACCGTCCTCGAT
GGCTCGGGTCACTTCGATGAAATGTCCTTCAAGATGAACACCATCAATAA
CGTCCGCTGGCAACAGATCAAACGGAGCGACCAGCCAGTGAACCTCGAAG
AAGCGCGTGCAAATGGCTACGTACATACAGACTTGAAGTCGATGCAAAGG
CGGGCACCGCAATTATCCACGCGGTATCGGGCAAGATAAGTGCCGACACC
TTTCGGTGCGAAATGGCGCCAATACAATTCTTTTCCGCCTCCATCATTCC
CGTCATCGACATCAGATG

Synonyms

Publications