jgi.p|Nanoce1779_2|41513, gene_5902 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|41513
Unique Name	gene_5902
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_11:900665..902934 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	41599
ProteinId	41513
Product name	expressed protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:900665..902934 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL069	ncniL069	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO14G03230	NO14G03230	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41513	mRNA_5902-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|41513	mRNA_5902	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|41513

>mRNA_5902-protein ID=mRNA_5902-protein|Name=jgi.p|Nanoce1779_2|41513|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MISADTFRCEMAPIQFFSASIIPVIDIRLEVDAKAGTAIIHAVSGKIKRS
DQPVNLEEARANGYVHTGSGHFDEMSFKMNTINNVRWQQIDEKTIKISSE
LQMEVSMDKPGWLLVPSSMMNRVGSLILQRVVKKTLPEFLQRIQNGYALW
AGGEVVV*

Synonyms

Publications