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Properties
| Property Name | Value |
|---|
| TranscriptId | 40217 |
| Track | FilteredModels2 |
| ProteinId | 40131 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:820619..823086 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5880 ID=mRNA_5880|Name=jgi.p|Nanoce1779_2|40131|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
AGATTTAGACTTCGTGGGGAGCTAGACGGACGAGACGCGAGAGACGCGGC
CCGAGTCGTGTGAGGTGCAAGAGGCCTGATACATTTAGCAAGATGGCTGA
CGTGGTAGCCACGCCTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCT
TTGGCTTCATGGGAGTGACGGCCGCCATCGTCTTTGCCAACCTCGGGTCC
GCCTATGGCACGGCCAAGTCAGGTGTGGGCATCAGCTCTATGGGTGTGAT
GAACCCGGGCCTGGTGATGCGCAATGTCATCCCTGTCGTCATGGCGGGTA
TCCTCGGTATTTACGGTTTGATCGTCGCCGTCATTATTACCGGAAACATC
GCGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAATACTCCCTTTA
CTCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGGCCTCAGCTCCC
TGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGCGTCCGTGCC
GTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCATCCTCATTTT
CGCCGAGGCGCTGGGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCC
AGCAGAACGTCTACTGACGGCTCCTACTGGTATGTTATCATGGTGGGGAA
AAATACACAACGCTTATATTGAGAAAAATATTGAAAAGAAAGAAAAAGAA
GAGAGGAGGAGGAGGAGGAGGAGAAAGAAATAAAGAAGGGAGGGAGACAG
ATGAGAAAAAGAGGTAGGGGTCAGAAAGGTCATTGACAAGAGAAGAAAAG
AGAGAGGGAGGCAGAAGGGAGTGAGGGTGACAGACAGGAGGAGGATGAGA
GGAAAGATTAGTATTGATCTCACCAAAGAATTGAAATCAAATTAAAAAGT
AATCGTAAGCTGGAAGACAGCACCTCTTTTTTCCCCTCCAATTTTTTGGG
GGTGGGCGGGATCTCTATCTC back to topprotein sequence of jgi.p|Nanoce1779_2|40131 >mRNA_5880-protein ID=mRNA_5880-protein|Name=jgi.p|Nanoce1779_2|40131|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MADVVATPQVEKCPASAPFFGFMGVTAAIVFANLGSAYGTAKSGVGISSM
GVMNPGLVMRNVIPVVMAGILGIYGLIVAVIITGNIAAPASVGDLLQTKY
SLYSGFAHLAAGLSCGLSSLAAGIAIGVVGDAGVRAVGQQERLFVGMILI
LIFAEALGLYGLIVSLILSQQNVY* back to topmRNA from alignment at scaffold_11:820619..823086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5880 ID=mRNA_5880|Name=jgi.p|Nanoce1779_2|40131|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at scaffold_11:820619..823086- (Nannochloropsis oceanica)
AGATTTAGACTTCGTGGGGAGCTAGACGGACGAGACGCGAGAGACGCGGC
CCGAGTCGTGTGAGGTGCAAGAGGCCTGGTACGCGTTGCATGAAGCATCG
ATTACCACACCATCATCACACGACCAGGCCAACGCCTCCGAGAGAAGTTC
TTGTTGAGGCCGCGGCGTGTGCTTCTCATGTTCAAAACCTCACACCGCAG
CCCATGAACACACGCAAGCGAAGCCAGCAGAAGACGCATGGATGCCCCTG
ATGCTTAAGCTGGAGTGGGAAGGCGTGGACTGTCGCTGGGCGAATTTAGA
AAGCGACAGCATCGTCTTGCATCTCCGTCCTTCCTGTCCTTATTCCGCAC
GCAAAGTTAAACACCATAACATCACTCATCATCCTTCACACACATACGCG
CACTCCAAACGCCTCATATAGATACATTTAGCAAGATGGCTGACGTGGTA
GCCACGCCTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTT
CATGGGAGTGACGGCCGCCATCGTCTTTGCCAGTACGTGAGATGGAGGGA
CAAAGGGGACGGGAGAAACAGGGGGGGGTAAATCGAGGAGTGGTCATATG
GAGAGAGTTTATGGGAATGAAGAGGGAGGAGGTGGCAGGAAGACCGTGGA
ATCGTTTTTAGGGACCTATTCTTCCCCGCTTCTCAACTGCCCGAGACATG
TTGCATGAATGAAAGTGGAGTCATTTCTCAGATGACATTCACGCAAATTA
AACATATGTATCGCCCCTAGTCCCTCCACTTACTCCCCCCTCTCCCTCCC
CTCCCCTCCCTGCGAACGAACAGACCTCGGGTCCGCCTATGGCACGGCCA
AGTCAGGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCTGGTG
ATGCGCAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTTACGG
TTTGATCGTCGCCGTCATTATTACCGGAAACAGTAAGGCCTCCCTACCTC
CCTCCCTCCCTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTACCTCCCTCCCTC
CCTCCCTCCCTCCCACCCTCCCTCCCTACCTCCCTTCCTTCCTCCATCCC
TTCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCTTTTTGCTACCGCGTCAC
GCTCTTTTCCTCACTTGCTTGCCATCTAACCCTCCCCCCATCCCTCCCTC
CCTCCCTCCCTCCCTTTATCCCAAGTCGCGGCGCCTGCCTCTGTAGGTGA
CTTGCTTCAGACGAAATACTCCCTTTACTCGGGTTTCGCCCACTTGGCAG
CTGGCTTATCTTGTGGCCTCAGGTACTATAGGGACAAGAAAAATCTCTTC
GCTCGCTCCCCCCCCTCCCACCCTCCCCTCCCTTCCCTCCCTCGCTTCCT
ACCTCCGGACTAAGCACGCATTCCCACATTCTGTCTTCCCCCCTCTCCCC
CTCCCCCCCCCCTCGTCAACAGCTCCCTGGCCGCTGGCATTGCCATCGGT
GTGGTCGGTGACGCGGGCGTCCGTGCCGTAGGGCAGCAGGAGCGGCTCTT
CGTGGGGATGATCCTCATCCTCATTTTCGCCGAGGCGCTGGGTAAGGAGG
GAGGGAGGGAGGGAGGGAAGGGGGAGTTGATTGAAAGAATGCAACGAGAC
GTGGAATTGGAGGGAGTGGGAGAAGGAGGGAGAGAAGGAGGAGGGATGGA
GGATTGCTTGGCAGTGTAGTCATGTCGCAGATTTACTCACCCATCCTTAT
TTTTCGTTTCCTTCCTTCCTTCCCTCCCTGCTTCTTTCCCTCCCTCCCTC
CCTTCCAGGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCAGA
ACGTCTACTGCGGCGCATAAGCAGCTGTTCTCGTGGGCCTCCCTCGCTCC
CTCCCCCGCTCCCTCCCCCGCTCCTGCCCTACGTCCCTCCTTCCCTCCCT
GCCCTTTCCGCTTGTTTGCGAAAAGGCATTGAGACGGGAGGAAGAGCAGG
GGGGAATAGGGCAGGGAGGGAAAAAGAGAATGACGGAGCGAGGGAGGGAG
AGAGGGATGGAGGACGGCTCCTACTGGTATGTTATCATGGTGGGGAAAAA
TACACAACGCTTATATTGAGAAAAATATTGAAAAGAAAGAAAAAGAAGAG
AGGAGGAGGAGGAGGAGGAGAAAGAAATAAAGAAGGGAGGGAGACAGATG
AGAAAAAGAGGTAGGGGTCAGAAAGGTCATTGACAAGAGAAGAAAAGAGA
GAGGGAGGCAGAAGGGAGTGAGGGTGACAGACAGGAGGAGGATGAGAGGA
AAGATTAGTATTGATCTCACCAAAGAATTGAAATCAAATTAAAAAGTAAT
CGTAAGCTGGAAGACAGCACCTCTTTTTTCCCCTCCAATTTTTTGGGGGT
GGGCGGGATCTCTATCTC back to topCoding sequence (CDS) from alignment at scaffold_11:820619..823086- >mRNA_5880 ID=mRNA_5880|Name=jgi.p|Nanoce1779_2|40131|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_11:820619..823086- (Nannochloropsis oceanica)
GAGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCAGAACGTCT
ACTCTCCCTGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGCG
TCCGTGCCGTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCATC
CTCATTTTCGCCGAGGCGCTGGTCGCGGCGCCTGCCTCTGTAGGTGACTT
GCTTCAGACGAAATACTCCCTTTACTCGGGTTTCGCCCACTTGGCAGCTG
GCTTATCTTGTGGCCTCAGACCTCGGGTCCGCCTATGGCACGGCCAAGTC
AGGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCTGGTGATGC
GCAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTTACGGTTTG
ATCGTCGCCGTCATTATTACCGGAAACAATGGCTGACGTGGTAGCCACGC
CTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTTCATGGGA
GTGACGGCCGCCATCGTCTTTGCCAGAGGCTCTACGGTCTGATTGTTTCC
CTGATTCTGTCCCAGCAGAACGTCTACTCTCCCTGGCCGCTGGCATTGCC
ATCGGTGTGGTCGGTGACGCGGGCGTCCGTGCCGTAGGGCAGCAGGAGCG
GCTCTTCGTGGGGATGATCCTCATCCTCATTTTCGCCGAGGCGCTGGTCG
CGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAATACTCCCTTTAC
TCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGGCCTCAGACCTCG
GGTCCGCCTATGGCACGGCCAAGTCAGGTGTGGGCATCAGCTCTATGGGT
GTGATGAACCCGGGCCTGGTGATGCGCAATGTCATCCCTGTCGTCATGGC
GGGTATCCTCGGTATTTACGGTTTGATCGTCGCCGTCATTATTACCGGAA
ACAATGGCTGACGTGGTAGCCACGCCTCAGGTTGAGAAGTGTCCGGCCTC
GGCCCCCTTCTTTGGCTTCATGGGAGTGACGGCCGCCATCGTCTTTGCCA
GAGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCAGAACGTCT
ACTCTCCCTGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGCG
TCCGTGCCGTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCATC
CTCATTTTCGCCGAGGCGCTGGTCGCGGCGCCTGCCTCTGTAGGTGACTT
GCTTCAGACGAAATACTCCCTTTACTCGGGTTTCGCCCACTTGGCAGCTG
GCTTATCTTGTGGCCTCAGACCTCGGGTCCGCCTATGGCACGGCCAAGTC
AGGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCTGGTGATGC
GCAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTTACGGTTTG
ATCGTCGCCGTCATTATTACCGGAAACAATGGCTGACGTGGTAGCCACGC
CTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTTCATGGGA
GTGACGGCCGCCATCGTCTTTGCCAGAGGCTCTACGGTCTGATTGTTTCC
CTGATTCTGTCCCAGCAGAACGTCTACTCTCCCTGGCCGCTGGCATTGCC
ATCGGTGTGGTCGGTGACGCGGGCGTCCGTGCCGTAGGGCAGCAGGAGCG
GCTCTTCGTGGGGATGATCCTCATCCTCATTTTCGCCGAGGCGCTGGTCG
CGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAATACTCCCTTTAC
TCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGGCCTCAGACCTCG
GGTCCGCCTATGGCACGGCCAAGTCAGGTGTGGGCATCAGCTCTATGGGT
GTGATGAACCCGGGCCTGGTGATGCGCAATGTCATCCCTGTCGTCATGGC
GGGTATCCTCGGTATTTACGGTTTGATCGTCGCCGTCATTATTACCGGAA
ACAATGGCTGACGTGGTAGCCACGCCTCAGGTTGAGAAGTGTCCGGCCTC
GGCCCCCTTCTTTGGCTTCATGGGAGTGACGGCCGCCATCGTCTTTGCCA
GAGGCTCTACGGTCTGATTGTTTCCCTGATTCTGTCCCAGCAGAACGTCT
ACTCTCCCTGGCCGCTGGCATTGCCATCGGTGTGGTCGGTGACGCGGGCG
TCCGTGCCGTAGGGCAGCAGGAGCGGCTCTTCGTGGGGATGATCCTCATC
CTCATTTTCGCCGAGGCGCTGGTCGCGGCGCCTGCCTCTGTAGGTGACTT
GCTTCAGACGAAATACTCCCTTTACTCGGGTTTCGCCCACTTGGCAGCTG
GCTTATCTTGTGGCCTCAGACCTCGGGTCCGCCTATGGCACGGCCAAGTC
AGGTGTGGGCATCAGCTCTATGGGTGTGATGAACCCGGGCCTGGTGATGC
GCAATGTCATCCCTGTCGTCATGGCGGGTATCCTCGGTATTTACGGTTTG
ATCGTCGCCGTCATTATTACCGGAAACAATGGCTGACGTGGTAGCCACGC
CTCAGGTTGAGAAGTGTCCGGCCTCGGCCCCCTTCTTTGGCTTCATGGGA
GTGACGGCCGCCATCGTCTTTGCCAGAGGCTCTACGGTCTGATTGTTTCC
CTGATTCTGTCCCAGCAGAACGTCTACTCTCCCTGGCCGCTGGCATTGCC
ATCGGTGTGGTCGGTGACGCGGGCGTCCGTGCCGTAGGGCAGCAGGAGCG
GCTCTTCGTGGGGATGATCCTCATCCTCATTTTCGCCGAGGCGCTGGTCG
CGGCGCCTGCCTCTGTAGGTGACTTGCTTCAGACGAAATACTCCCTTTAC
TCGGGTTTCGCCCACTTGGCAGCTGGCTTATCTTGTGGCCTCAGACCTCG
GGTCCGCCTATGGCACGGCCAAGTCAGGTGTGGGCATCAGCTCTATGGGT
GTGATGAACCCGGGCCTGGTGATGCGCAATGTCATCCCTGTCGTCATGGC
GGGTATCCTCGGTATTTACGGTTTGATCGTCGCCGTCATTATTACCGGAA
ACAATGGCTGACGTGGTAGCCACGCCTCAGGTTGAGAAGTGTCCGGCCTC
GGCCCCCTTCTTTGGCTTCATGGGAGTGACGGCCGCCATCGTCTTTGCCA back to top
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