jgi.p|Nanoce1779_2|40131, gene_5880 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|40131
Unique Namegene_5880
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:820619..823086 -

Link to JBrowse

Properties
Property NameValue
TranscriptId40217
ProteinId40131
Product namevacuolar ATP synthase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:820619..823086 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
GO:0016469proton-transporting two-sector ATPase complex
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
GO:0005524ATP binding
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0046961proton-transporting ATPase activity, rotational mechanism
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G03000NO14G03000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40131mRNA_5880-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|40131mRNA_5880Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|40131

>mRNA_5880-protein ID=mRNA_5880-protein|Name=jgi.p|Nanoce1779_2|40131|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MADVVATPQVEKCPASAPFFGFMGVTAAIVFANLGSAYGTAKSGVGISSM
GVMNPGLVMRNVIPVVMAGILGIYGLIVAVIITGNIAAPASVGDLLQTKY
SLYSGFAHLAAGLSCGLSSLAAGIAIGVVGDAGVRAVGQQERLFVGMILI
LIFAEALGLYGLIVSLILSQQNVY*
back to top
Synonyms
Publications