jgi.p|Nanoce1779_2|590587, mRNA_5864 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590587
Unique NamemRNA_5864
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length854
Alignment locationscaffold_11:768770..770457 -

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Properties
Property NameValue
TranscriptId590673
TrackFilteredModels2
ProteinId590587
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:768770..770457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590587gene_5864Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590587mRNA_5864-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5864CDS_5864Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5864 ID=mRNA_5864|Name=jgi.p|Nanoce1779_2|590587|organism=Nannochloropsis oceanica|type=mRNA|length=854bp
ACAGACAACACCACCCTAGTCCCAACAACACCATGCAGCGTCTCTCCACC
ACGCTCCTGTCCCTCGCGGCTCTCCTCATTCTTGGCACCGCTGCTGCTGC
CGGTGATGTCTGCCATCTCTACAGCACTACTATTGAGTCCCCTTGCTTCA
CGACCGTAAAGAACACGTCTGCATATGAAGTCCGCAAGTATGGAGGGGAC
GAAATGTGGACCAGCGCTCACATTAAGGCCCGTTCGTTTGCCGTGGCTCA
AAACAAGGGCTTCATGACGAATTTTGAGTACATCTCCGGCGAAAACAGCA
AAGAAGAGAAAATTCCCATGACCGCCCCCGTCATCTTCCGCCGCTCCCCC
GATGGTGATGCAGGGTGGTTGGTCTCCTTCTTTGTCCCGAGCAAGTTCGC
CACCAAGGATGACGTTCCCTTGCCTAACAATGAGGACATGAGCATCATGT
CTCTGGAAGGAGCCACATATGCCGTGCGGGTTTTCGATGGCTTCGCCACT
ATCTGGGATTTCGAGAAGAACGAATACGAGCTTAAGAAAGCCCTTTTGGC
CGATGGAGTGGCTCCCATGGAGGACAAAAATAATGGCGTGATTTACGCGG
GTTACGACAGTCCGTTTGTCTACGTAAACCGTCACAATGAGGTGTGGGTC
CGCGTGGCTTGAGCCAGAGGAGACCATGAGGACCGAAGTAGTGTAGATAT
GAGCATAGCAAGAGGTTGTGGTAGAGCAACAGGAATGGCGAGTAGCTAGG
ACTTGGGAGAAAGTGAGGGCTGTGCACAGACCGTCGACCGCGCGCACACA
CATATACGCCAAAAACTCGTTGCACAGAAAGAAGCAATAAGCAAGGAAAC
AAAA
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protein sequence of jgi.p|Nanoce1779_2|590587

>mRNA_5864-protein ID=mRNA_5864-protein|Name=jgi.p|Nanoce1779_2|590587|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MQRLSTTLLSLAALLILGTAAAAGDVCHLYSTTIESPCFTTVKNTSAYEV
RKYGGDEMWTSAHIKARSFAVAQNKGFMTNFEYISGENSKEEKIPMTAPV
IFRRSPDGDAGWLVSFFVPSKFATKDDVPLPNNEDMSIMSLEGATYAVRV
FDGFATIWDFEKNEYELKKALLADGVAPMEDKNNGVIYAGYDSPFVYVNR
HNEVWVRVA*
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mRNA from alignment at scaffold_11:768770..770457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5864 ID=mRNA_5864|Name=jgi.p|Nanoce1779_2|590587|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at scaffold_11:768770..770457- (Nannochloropsis oceanica)
ACAGACAACACCACCCTAGTCCCAACAACACCATGCAGCGTCTCTCCACC
ACGCTCCTGTCCCTCGCGGTACGTACAACTCATGCATGTGTCTTGCTTGC
TTCATTGGAGGGTTTTAGAGGAGTTTACTCGAGCAATGCTGACGTGTTTG
TCATGGAAGCTTCTATGAGCGGTGGTCGCGCGGCAGACCTGGTTTCAATC
CGCGCGCGGGAGCGAATCCAGCCTTTAACTCTACTCCTGTGCTCCTCCTG
ACATCCTGCTAGACTTCTGAGGATCGCGGCATCGGTGTCCTCCACCTGGT
CTCTGTACCCCAGTCGTTGCCCCTTACCCCTTCGTCCCCTCCTCCTGCCT
CCCTGTCCCTTACCATCACAGGCTCTCCTCATTCTTGGCACCGCTGCTGC
TGCCGGTGATGTCTGCCATCTCTACAGCACTACTATTGAGTCCCCTTGCT
TCACGACCGTAAAGAACACGTCTGCATATGAAGTCCGCAAGTATGGAGGG
GACGAAATGTGGACCAGGTATGTGATGTGCGAGGAGAGGAATGGAAAGAT
TGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAATTGGATACAATCG
CTGGACTCTGAATGCATGGAGCTCGCATGCGTGTCAAAAGCAATAGCAAA
TTAGGAGTTAATCCATTCACACCCACCATCCCCTCCTTCCCTACCTTGTC
TTTTTCTCCCCTCCCTATTCCTTTAGCGCTCACATTAAGGCCCGTTCGTT
TGCCGTGGCTCAAAACAAGGGCTTCATGACGAATTTTGAGTACATCTCCG
GTACGTGACTAGTTCGGATGAAAGGCTCGAGGGCAGACGACTCCTCTACT
CTTCAAAATAAGAGGAAGCAGGAAGAAAATGGAGTCAATCCTCACATTAT
ACGAGAAAACTGACATTTCCCAATGTCCGCTTCCATGTCTCCCTCTGTTA
ATCCCTTTTACAGGCGAAAACAGCAAAGAAGAGAAAATTCCCATGACCGC
CCCCGTCATCTTCCGCCGCTCCCCCGATGGTGATGCAGGGTGGTTGGTCT
CCTTCTTTGTCCCGAGCAAGTTCGCCACCAAGGATGACGTTCCCTTGCCT
AACAATGAGGACATGAGCATCATGTCTCTGGAAGGAGCCACATATGCCGT
GCGGGTTTTCGATGGCTTCGCCACTATCTGGTACGTGCTCTCCTTCGCTC
CCTCCCTCCTTGCCTCCTTTCCTTGCCTCCCTTCGTGACGTATACGTTGA
CCACCAAAGTAAGAGCCATGACTATAAAGCGCTGATCTTTCTCCGTCTAC
TTCCGCTGCTCACTCCTTCCTCCCCTTCGTCATCAACAGGGATTTCGAGA
AGAACGAATACGAGCTTAAGAAAGCCCTTTTGGCCGATGGAGTGGCTCCC
ATGGAGGACAAAAATAATGGCGTGATTTACGCGGGTTACGACAGTCCGTT
TGTCTACGTAAACCGTCACAATGAGGTGTGGGTCCGCGTGGCTTGAGCCA
GAGGAGACCATGAGGACCGAAGTAGTGTAGATATGAGCATAGCAAGAGGT
TGTGGTAGAGCAACAGGAATGGCGAGTAGCTAGGACTTGGGAGAAAGTGA
GGGCTGTGCACAGACCGTCGACCGCGCGCACACACATATACGCCAAAAAC
TCGTTGCACAGAAAGAAGCAATAAGCAAGGAAACAAAA
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Coding sequence (CDS) from alignment at scaffold_11:768770..770457-

>mRNA_5864 ID=mRNA_5864|Name=jgi.p|Nanoce1779_2|590587|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_11:768770..770457- (Nannochloropsis oceanica)
GGATTTCGAGAAGAACGAATACGAGCTTAAGAAAGCCCTTTTGGCCGATG
GAGTGGCTCCCATGGAGGACAAAAATAATGGCGTGATTTACGCGGGTTAC
GACAGTCCGTTTGTCTACGTAAACCGTCACAATGAGGTGTGGGTCCGCGT
GGCTTGAGCGAAAACAGCAAAGAAGAGAAAATTCCCATGACCGCCCCCGT
CATCTTCCGCCGCTCCCCCGATGGTGATGCAGGGTGGTTGGTCTCCTTCT
TTGTCCCGAGCAAGTTCGCCACCAAGGATGACGTTCCCTTGCCTAACAAT
GAGGACATGAGCATCATGTCTCTGGAAGGAGCCACATATGCCGTGCGGGT
TTTCGATGGCTTCGCCACTATCTGCGCTCACATTAAGGCCCGTTCGTTTG
CCGTGGCTCAAAACAAGGGCTTCATGACGAATTTTGAGTACATCTCCGGC
TCTCCTCATTCTTGGCACCGCTGCTGCTGCCGGTGATGTCTGCCATCTCT
ACAGCACTACTATTGAGTCCCCTTGCTTCACGACCGTAAAGAACACGTCT
GCATATGAAGTCCGCAAGTATGGAGGGGACGAAATGTGGACCAGATGCAG
CGTCTCTCCACCACGCTCCTGTCCCTCGCGGGATTTCGAGAAGAACGAAT
ACGAGCTTAAGAAAGCCCTTTTGGCCGATGGAGTGGCTCCCATGGAGGAC
AAAAATAATGGCGTGATTTACGCGGGTTACGACAGTCCGTTTGTCTACGT
AAACCGTCACAATGAGGTGTGGGTCCGCGTGGCTTGAGCGAAAACAGCAA
AGAAGAGAAAATTCCCATGACCGCCCCCGTCATCTTCCGCCGCTCCCCCG
ATGGTGATGCAGGGTGGTTGGTCTCCTTCTTTGTCCCGAGCAAGTTCGCC
ACCAAGGATGACGTTCCCTTGCCTAACAATGAGGACATGAGCATCATGTC
TCTGGAAGGAGCCACATATGCCGTGCGGGTTTTCGATGGCTTCGCCACTA
TCTGCGCTCACATTAAGGCCCGTTCGTTTGCCGTGGCTCAAAACAAGGGC
TTCATGACGAATTTTGAGTACATCTCCGGCTCTCCTCATTCTTGGCACCG
CTGCTGCTGCCGGTGATGTCTGCCATCTCTACAGCACTACTATTGAGTCC
CCTTGCTTCACGACCGTAAAGAACACGTCTGCATATGAAGTCCGCAAGTA
TGGAGGGGACGAAATGTGGACCAGATGCAGCGTCTCTCCACCACGCTCCT
GTCCCTCGCGGGATTTCGAGAAGAACGAATACGAGCTTAAGAAAGCCCTT
TTGGCCGATGGAGTGGCTCCCATGGAGGACAAAAATAATGGCGTGATTTA
CGCGGGTTACGACAGTCCGTTTGTCTACGTAAACCGTCACAATGAGGTGT
GGGTCCGCGTGGCTTGAGCGAAAACAGCAAAGAAGAGAAAATTCCCATGA
CCGCCCCCGTCATCTTCCGCCGCTCCCCCGATGGTGATGCAGGGTGGTTG
GTCTCCTTCTTTGTCCCGAGCAAGTTCGCCACCAAGGATGACGTTCCCTT
GCCTAACAATGAGGACATGAGCATCATGTCTCTGGAAGGAGCCACATATG
CCGTGCGGGTTTTCGATGGCTTCGCCACTATCTGCGCTCACATTAAGGCC
CGTTCGTTTGCCGTGGCTCAAAACAAGGGCTTCATGACGAATTTTGAGTA
CATCTCCGGCTCTCCTCATTCTTGGCACCGCTGCTGCTGCCGGTGATGTC
TGCCATCTCTACAGCACTACTATTGAGTCCCCTTGCTTCACGACCGTAAA
GAACACGTCTGCATATGAAGTCCGCAAGTATGGAGGGGACGAAATGTGGA
CCAGATGCAGCGTCTCTCCACCACGCTCCTGTCCCTCGCGGGATTTCGAG
AAGAACGAATACGAGCTTAAGAAAGCCCTTTTGGCCGATGGAGTGGCTCC
CATGGAGGACAAAAATAATGGCGTGATTTACGCGGGTTACGACAGTCCGT
TTGTCTACGTAAACCGTCACAATGAGGTGTGGGTCCGCGTGGCTTGAGCG
AAAACAGCAAAGAAGAGAAAATTCCCATGACCGCCCCCGTCATCTTCCGC
CGCTCCCCCGATGGTGATGCAGGGTGGTTGGTCTCCTTCTTTGTCCCGAG
CAAGTTCGCCACCAAGGATGACGTTCCCTTGCCTAACAATGAGGACATGA
GCATCATGTCTCTGGAAGGAGCCACATATGCCGTGCGGGTTTTCGATGGC
TTCGCCACTATCTGCGCTCACATTAAGGCCCGTTCGTTTGCCGTGGCTCA
AAACAAGGGCTTCATGACGAATTTTGAGTACATCTCCGGCTCTCCTCATT
CTTGGCACCGCTGCTGCTGCCGGTGATGTCTGCCATCTCTACAGCACTAC
TATTGAGTCCCCTTGCTTCACGACCGTAAAGAACACGTCTGCATATGAAG
TCCGCAAGTATGGAGGGGACGAAATGTGGACCAGATGCAGCGTCTCTCCA
CCACGCTCCTGTCCCTCGCGGGATTTCGAGAAGAACGAATACGAGCTTAA
GAAAGCCCTTTTGGCCGATGGAGTGGCTCCCATGGAGGACAAAAATAATG
GCGTGATTTACGCGGGTTACGACAGTCCGTTTGTCTACGTAAACCGTCAC
AATGAGGTGTGGGTCCGCGTGGCTTGAGCGAAAACAGCAAAGAAGAGAAA
ATTCCCATGACCGCCCCCGTCATCTTCCGCCGCTCCCCCGATGGTGATGC
AGGGTGGTTGGTCTCCTTCTTTGTCCCGAGCAAGTTCGCCACCAAGGATG
ACGTTCCCTTGCCTAACAATGAGGACATGAGCATCATGTCTCTGGAAGGA
GCCACATATGCCGTGCGGGTTTTCGATGGCTTCGCCACTATCTGCGCTCA
CATTAAGGCCCGTTCGTTTGCCGTGGCTCAAAACAAGGGCTTCATGACGA
ATTTTGAGTACATCTCCGGCTCTCCTCATTCTTGGCACCGCTGCTGCTGC
CGGTGATGTCTGCCATCTCTACAGCACTACTATTGAGTCCCCTTGCTTCA
CGACCGTAAAGAACACGTCTGCATATGAAGTCCGCAAGTATGGAGGGGAC
GAAATGTGGACCAGATGCAGCGTCTCTCCACCACGCTCCTGTCCCTCGCG
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Synonyms
Publications