jgi.p|Nanoce1779_2|37426, mRNA_5791 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|37426
Unique Name	mRNA_5791
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2552
Alignment location	scaffold_11:578297..580848 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	37512
Track	FilteredModels2
ProteinId	37426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:578297..580848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|37426	gene_5791	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|37426	mRNA_5791-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5791	CDS_5791	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:578297..580848+
coding sequence from alignment at scaffold_11:578297..580848+

mRNA sequence

>mRNA_5791 ID=mRNA_5791|Name=jgi.p|Nanoce1779_2|37426|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp
CATCCAACTCTCAAAAATAATTACATACAAAATCACATGGCACAGCCGTA
GCAGGACAATACTTAGACAATAAGCGACGTGACCGGCGCGAAGCCGTCTT
GTGGAATATGATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGC
GGGACGTGAAACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGC
TTGCAAAAGAGTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACA
GCAACAAGCGAATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACA
ACTTGGAAATGGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCC
ATGCGCACCGTCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGC
CGAGTTTTCACCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGG
GGTCTCGCTTAGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGG
TACCACTTTCAAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACAT
CCACCAAGTCACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGC
TGGCCCGTACAGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCC
CTCCAGCAAAGGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCAT
CCTGGAAGAAGACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTA
CTGGCAATAGCACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAG
CTTGCAGATCAGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGC
AGTCAAAACCTACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGG
AAGATTCAATCACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAG
CAAGGGCGAAGGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGA
TCGTCTGCTTCAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGT
GTCGTGCCCTCCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAA
TTAGCCTGTGTAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCC
GCCACTGACGACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTG
TTAGAGCATTCGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCC
GAAGTTCGTCGGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGA
AGCCAAAGTGCAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGG
CTGAGGACTCGGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGC
AGAGTCGAGCGCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAG
CACCGCAAGAGTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCG
GGCATGCTCCCACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCG
TTCAACTATTTTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCA
ACAGCAAGAACAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACC
ACCACCACCACCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCT
CGCTTACCTTTGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGC
ACCACCATTACCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAG
GTACATCAATCATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAA
CCAGAGTACGGCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATC
ATCTGCTCCTGCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACC
CACACCAACAACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAA
CATCCACCGCCTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCA
CCTCTATCAGCAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCG
CCAGTGCTGGCACGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GAAGGAGAGAGGGAAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGG
TATTTCAGCAGCCTGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAA
GTCCAACTCCAGGAGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGC
ATGAATTACAGTCTGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGC
GTTGCGGACGAGGATAGTAGAGGAGATGTGTCAGCGCAATTGAAATTGAG
AGAAAACGAAGGAGGAAGGGAGGGAATCAAAGGTAATGATTTTGCGATGG
TGGCTGTCGACAAATTGATCTCTTCGTGTGACGAGTGCCAAAGGTAACAT
AGCAAAGTATCTTGAGAAATGTGCCGATGTGCTTCACTAGTTCTTTTAAA
CA

protein sequence of jgi.p|Nanoce1779_2|37426

>mRNA_5791-protein ID=mRNA_5791-protein|Name=jgi.p|Nanoce1779_2|37426|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp
MMAATATSSSSFSLRDVKLDDLLAGTGPYTGLQKSVRLTFKCLTQAIQQQ
ANEMTKFYEQQTRHNLEMAALQEQVQTSAVSMRTVRTLLEGHVEALRAEF
SPKLRGLEARVQDMGSRLVDVEQQQQRHYRRYHFQEDHSASSNKEDNIHQ
VTLHVERMQADLTRLARTVERKADQEEVAAALQQRVNKASLAKRIHTILE
EDEQNINNRKSARSTGNSTALMTAHQRLKMKLADQEEVVLRILQEMEAVK
TYVLGSGDKANGGGEDSITTIMNNLQSMLQQQGRRLHRTEKDVAGLRDRL
LQDHAALDTKVEERCRALQQQHHEQQEQHQQLACVVSNIEVERKEAMPPL
TTTTTTAVLALEERVRAFESNIVKELDVRDAEVRRHLDSANRNIRALEAK
VQCEESRVEERLNKAEDSVAFQSGQRLHVLRRVERLEQQQLNLTAGVSTA
RVRSSSSARSPISIGHAPTISPAATSAAVRSFNYFSTPDPLRAYQNVQQQ
EQQQQPQLQWQQQHHHHHQAPQHSPPSLAQARLPLPVGGLGGYRGTGAPP
LPPAGGDGGGSGGGGTSIIPARPSTSTMTLKPEYGRTGTLSLSSSLPSSA
PAPPSRTHLQATEHPHQQRQKHYSRDNSLSQHPPPPLLASPESLLPHHLY
QQQEQPPHAAWPVAASAGTGGGGGGGGGGGGEGEREAGFAESKQATGGIS
AAWCGSLTTASSPGSPTPGEREGRSATSTGGMNYSLEKLEALRVEKLALR
TRIVEEMCQRN*

mRNA from alignment at scaffold_11:578297..580848+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5791 ID=mRNA_5791|Name=jgi.p|Nanoce1779_2|37426|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp|location=Sequence derived from alignment at scaffold_11:578297..580848+ (Nannochloropsis oceanica)
CATCCAACTCTCAAAAATAATTACATACAAAATCACATGGCACAGCCGTA
GCAGGACAATACTTAGACAATAAGCGACGTGACCGGCGCGAAGCCGTCTT
GTGGAATATGATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGC
GGGACGTGAAACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGC
TTGCAAAAGAGTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACA
GCAACAAGCGAATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACA
ACTTGGAAATGGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCC
ATGCGCACCGTCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGC
CGAGTTTTCACCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGG
GGTCTCGCTTAGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGG
TACCACTTTCAAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACAT
CCACCAAGTCACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGC
TGGCCCGTACAGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCC
CTCCAGCAAAGGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCAT
CCTGGAAGAAGACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTA
CTGGCAATAGCACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAG
CTTGCAGATCAGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGC
AGTCAAAACCTACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGG
AAGATTCAATCACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAG
CAAGGGCGAAGGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGA
TCGTCTGCTTCAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGT
GTCGTGCCCTCCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAA
TTAGCCTGTGTAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCC
GCCACTGACGACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTG
TTAGAGCATTCGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCC
GAAGTTCGTCGGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGA
AGCCAAAGTGCAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGG
CTGAGGACTCGGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGC
AGAGTCGAGCGCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAG
CACCGCAAGAGTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCG
GGCATGCTCCCACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCG
TTCAACTATTTTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCA
ACAGCAAGAACAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACC
ACCACCACCACCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCT
CGCTTACCTTTGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGC
ACCACCATTACCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAG
GTACATCAATCATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAA
CCAGAGTACGGCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATC
ATCTGCTCCTGCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACC
CACACCAACAACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAA
CATCCACCGCCTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCA
CCTCTATCAGCAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCG
CCAGTGCTGGCACGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GAAGGAGAGAGGGAAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGG
TATTTCAGCAGCCTGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAA
GTCCAACTCCAGGAGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGC
ATGAATTACAGTCTGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGC
GTTGCGGACGAGGATAGTAGAGGAGATGTGTCAGCGCAATTGAAATTGAG
AGAAAACGAAGGAGGAAGGGAGGGAATCAAAGGTAATGATTTTGCGATGG
TGGCTGTCGACAAATTGATCTCTTCGTGTGACGAGTGCCAAAGGTAACAT
AGCAAAGTATCTTGAGAAATGTGCCGATGTGCTTCACTAGTTCTTTTAAA
CA

Coding sequence (CDS) from alignment at scaffold_11:578297..580848+

>mRNA_5791 ID=mRNA_5791|Name=jgi.p|Nanoce1779_2|37426|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_11:578297..580848+ (Nannochloropsis oceanica)
ATGATGGCAGCGACGGCAACCAGCTCCAGCAGCTTTTCCTTGCGGGACGT
GAAACTAGACGACCTCTTGGCAGGCACGGGGCCCTATACAGGCTTGCAAA
AGAGTGTTCGTCTCACCTTCAAGTGTCTCACACAAGCCATACAGCAACAA
GCGAATGAGATGACCAAATTTTACGAGCAGCAAACCCGTCACAACTTGGA
AATGGCGGCCCTCCAAGAGCAAGTCCAGACAAGCGCCGTCTCCATGCGCA
CCGTCCGCACGCTGCTTGAAGGGCATGTAGAGGCGTTGCGAGCCGAGTTT
TCACCGAAATTGCGAGGGCTTGAGGCCCGTGTTCAGGATATGGGGTCTCG
CTTAGTGGACGTTGAGCAGCAACAGCAGCGCCACTACCGCCGGTACCACT
TTCAAGAAGACCACAGTGCCAGCAGCAACAAAGAAGACAACATCCACCAA
GTCACGCTGCATGTGGAGCGAATGCAAGCGGATTTGACCCGGCTGGCCCG
TACAGTGGAGAGGAAGGCCGATCAGGAGGAAGTAGCGGCGGCCCTCCAGC
AAAGGGTTAATAAAGCCTCGCTTGCCAAGCGCATACATACCATCCTGGAA
GAAGACGAGCAGAACATCAACAACCGCAAAAGTGCCCGCAGTACTGGCAA
TAGCACGGCCTTGATGACTGCGCATCAGCGTCTCAAAATGAAGCTTGCAG
ATCAGGAAGAAGTAGTCCTCCGAATTCTCCAAGAAATGGAGGCAGTCAAA
ACCTACGTGCTTGGCAGTGGGGACAAGGCCAATGGAGGGGGGGAAGATTC
AATCACCACTATTATGAATAACCTGCAGAGCATGTTGCAGCAGCAAGGGC
GAAGGCTGCATCGAACGGAAAAGGACGTGGCTGGGCTGAGAGATCGTCTG
CTTCAGGATCATGCTGCGCTTGACACCAAGGTAGAGGAGCGGTGTCGTGC
CCTCCAACAGCAGCACCATGAGCAGCAGGAACAGCATCAGCAATTAGCCT
GTGTAGTGAGTAACATAGAGGTGGAGAGGAAGGAGGCTATGCCGCCACTG
ACGACGACGACAACAACCGCGGTGCTGGCTTTGGAAGAGCGTGTTAGAGC
ATTCGAAAGTAACATTGTCAAGGAGTTGGATGTGCGCGATGCCGAAGTTC
GTCGGCACCTGGACAGTGCCAACCGTAACATCCGCGCCTTAGAAGCCAAA
GTGCAATGTGAGGAAAGTAGGGTCGAAGAGCGGTTGAACAAGGCTGAGGA
CTCGGTAGCTTTCCAATCAGGTCAACGCCTTCATGTCCTCCGCAGAGTCG
AGCGCCTGGAGCAGCAACAGCTGAACCTTACAGCTGGTGTCAGCACCGCA
AGAGTCCGCTCTTCTTCCTCGGCCCGCTCTCCCATCAGTATCGGGCATGC
TCCCACTATTTCCCCCGCGGCCACTTCGGCGGCTGTTCGATCGTTCAACT
ATTTTAGCACCCCTGACCCCTTGCGAGCCTATCAGAACGTGCAACAGCAA
GAACAGCAACAGCAACCGCAACTTCAATGGCAGCAGCAGCACCACCACCA
CCACCAAGCACCACAGCATTCGCCCCCATCATTGGCACAGGCTCGCTTAC
CTTTGCCTGTTGGTGGATTGGGGGGGTATCGCGGGACGGGAGCACCACCA
TTACCACCTGCAGGAGGAGATGGTGGAGGAAGTGGAGGAGGAGGTACATC
AATCATACCTGCCCGGCCCAGCACCAGCACCATGACCTTAAAACCAGAGT
ACGGCAGGACAGGAACTCTATCATTGTCGTCCTCACTACCATCATCTGCT
CCTGCTCCTCCTTCTCGCACCCATCTCCAGGCGACCGAGCACCCACACCA
ACAACGACAGAAGCATTACTCCCGGGATAACTCTTTGTCACAACATCCAC
CGCCTCCTCTACTTGCATCGCCAGAATCCCTCCTTCCCCATCACCTCTAT
CAGCAGCAGGAGCAGCCACCTCACGCGGCATGGCCAGTTGCCGCCAGTGC
TGGCACGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAAGGAG
AGAGGGAAGCTGGATTTGCAGAAAGTAAACAGGCCACAGGTGGTATTTCA
GCAGCCTGGTGCGGCAGTCTTACCACCGCTTCTTCTCCAGGAAGTCCAAC
TCCAGGAGAGAGGGAGGGAAGGAGCGCGACTTCGACGGGTGGCATGAATT
ACAGTCTGGAGAAGTTGGAGGCCTTGCGAGTGGAGAAGTTGGCGTTGCGG
ACGAGGATAGTAGAGGAGATGTGTCAGCGCAATTGA

Synonyms

Publications